Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 2.7e-250 868.2 444 100.0
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 2.7e-194 682.2 451 80.0
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 1.9e-192 676.0 421 82.4
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 1.2e-189 666.8 445 76.2
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 6.3e-183 644.4 443 75.6
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 2.4e-182 642.5 449 75.1
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 8.5e-180 634.0 448 74.3
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 1.4e-179 633.3 505 69.5
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 2.5e-179 632.5 439 77.7
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 2.7e-178 629.0 449 75.1
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 3.6e-178 628.6 451 72.7
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 7.9e-178 627.5 445 73.7
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 4.4e-176 621.7 451 72.9
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 1.3e-175 620.2 439 72.9
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 3.7e-175 618.6 450 72.2
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 3.7e-175 618.6 445 70.8
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 5.3e-174 614.8 449 71.7
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 1.5e-173 613.2 448 72.8
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 1.5e-173 613.2 450 71.6
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 1.5e-173 613.2 444 72.7
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 2.6e-173 612.5 424 75.9
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 1.3e-172 610.1 443 72.9
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.3e-172 610.1 448 72.8
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 1.7e-172 609.8 421 76.0
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 2.2e-172 609.4 450 71.6
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.2e-172 609.4 448 72.3
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 2.9e-172 609.0 448 70.8
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 3.8e-172 608.6 470 68.9
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 3.8e-172 608.6 470 68.9
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 3.2e-171 605.5 451 71.6
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 4.2e-171 605.1 449 71.5
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.2e-170 603.6 448 72.3
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.6e-170 603.2 448 72.3
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 4.7e-170 601.7 446 70.9
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 6.1e-170 601.3 445 71.5
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 1.0e-169 600.5 447 71.4
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 1.8e-169 599.7 445 70.8
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 3.0e-169 599.0 447 70.0
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 6.7e-169 597.8 448 70.3
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 8.8e-169 597.4 456 71.1
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 1.5e-168 596.7 446 71.5
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 1.5e-168 596.7 452 69.7
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.6e-168 595.9 448 71.4
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 4.4e-168 595.1 448 71.7
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 4.4e-168 595.1 447 70.0
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 7.4e-168 594.3 446 70.9
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.3e-167 593.6 448 71.2
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 2.2e-167 592.8 445 71.5
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 1.4e-166 590.1 444 69.6
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.4e-166 589.3 448 71.4
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 5.3e-166 588.2 448 70.8
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.2e-165 587.0 448 70.8
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 1.6e-165 586.6 454 69.6
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 2.6e-165 585.9 460 68.9
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 4.5e-165 585.1 448 69.6
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 7.7e-165 584.3 404 77.0
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.9e-164 582.4 462 69.0
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 1.1e-163 580.5 446 69.3
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 1.2e-162 577.0 445 69.4
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 1.4e-161 573.5 445 68.3
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 1.4e-161 573.5 437 68.9
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 3.0e-161 572.4 428 72.0
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 2.4e-158 562.8 447 67.3
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 9.1e-158 560.8 524 59.7
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 1.2e-157 560.5 450 68.4
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 3.5e-157 558.9 445 67.4
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 5.9e-157 558.1 434 68.7
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 6.5e-156 554.7 434 68.0
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 1.1e-155 553.9 443 67.3
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 1.5e-155 553.5 440 68.0
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 1.9e-155 553.1 440 68.4
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 2.5e-155 552.7 459 66.4
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 6.1e-154 548.1 443 67.0
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 6.1e-154 548.1 446 68.4
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 1.0e-153 547.4 440 66.6
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 1.0e-153 547.4 409 72.6
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.2e-152 543.9 445 65.8
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 1.5e-152 543.5 440 66.6
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 3.4e-152 542.3 434 67.1
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 2.8e-151 539.3 426 68.1
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 2.4e-150 536.2 437 66.6
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 5.4e-150 535.0 460 63.0
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 1.6e-149 533.5 436 66.5
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 3.8e-148 528.9 436 66.7
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 3.8e-148 528.9 396 71.0
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 5.5e-147 525.0 436 66.5
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 2.8e-143 512.7 441 61.9
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 2.7e-141 506.1 446 62.1
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 1.9e-139 500.0 438 63.9
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 2.1e-138 496.5 442 62.4
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 6.8e-137 491.5 462 62.6
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 7.5e-136 488.0 352 72.4
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 1.0e-132 477.6 468 57.5
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 3.0e-132 476.1 356 71.1
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 1.4e-129 467.2 451 57.4
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 1.2e-128 464.2 419 61.8
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 2.2e-127 459.9 424 60.6
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 2.3e-124 449.9 276 82.6
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 2.6e-120 436.4 436 52.5
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 9.9e-120 434.5 438 53.4
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 9.9e-120 434.5 268 82.8
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 2.1e-117 426.8 425 58.1
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 6.6e-116 421.8 255 81.6
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 3.3e-115 419.5 253 84.2
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 1.6e-114 417.2 452 56.0
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 6.2e-114 415.2 329 67.2
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 2.1e-109 400.2 414 53.4
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 1.5e-107 394.0 229 86.5
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 7.1e-102 375.2 323 68.1
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 2.7e-101 373.2 426 52.3
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 6.0e-93 345.5 319 62.4
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 5.1e-92 342.4 486 44.4
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 1.8e-89 334.0 290 62.8
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 2.4e-89 333.6 320 58.8
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 1.3e-87 327.8 363 54.0
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 9.0e-81 305.1 209 75.1
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 6.5e-79 298.9 285 61.1
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 1.8e-73 280.8 288 53.5
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 9.4e-70 268.5 261 55.6
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 3.1e-65 253.4 247 58.3
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 1.6e-61 241.1 400 41.8
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 1.5e-59 234.6 207 62.8
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 2.4e-57 227.3 433 34.4
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 3.6e-53 213.4 275 44.4
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 2.6e-51 207.2 183 64.5
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 3.8e-47 193.4 204 57.8
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 1.2e-45 188.3 128 68.0
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 6.1e-45 186.0 250 42.8
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.3e-42 178.3 106 84.0
Glyma.15G221000 Glycine max HOM05D005149 ORTHO05D006251 1.7e-39 167.9 98 84.7
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 2.9e-39 167.2 86 91.9
VMungo1127G1160 Vigna mungo HOM05D005149 ORTHO05D000001 7.7e-32 142.5 74 90.5
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 1.8e-28 131.3 86 74.4
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 1.5e-27 128.3 80 73.8
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 2.0e-27 127.9 87 73.6
Cfa024879 Carpinus fangiana HOM05D005149 ORTHO05D006251 1.0e-23 115.5 372 28.5
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 1.5e-22 111.7 67 79.1
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.8e-20 104.8 188 42.0
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 1.5e-19 101.7 94 59.6
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 3.4e-19 100.5 69 76.8
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 2.3e-15 87.8 188 37.2
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 3.9e-15 87.0 82 61.0
Rhsim04G0076600 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.1e-12 79.0 59 67.8
MBI14_g16397_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 1.5e-11 75.1 41 82.9
Gorai.004G275700 Gossypium raimondii HOM05D005149 ORTHO05D006251 9.2e-09 65.9 62 56.5
arahy.Tifrunner.gnm1.ann1.638LQB Arachis hypogaea HOM05D000561 ORTHO05D000514 2.3e-07 61.2 37 78.4
TWI15G0704 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 1.1e-06 58.9 44 63.6


User provided reference genes

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