Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029706 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 1.7e-114 416.0 211 100.0
CSS0037562 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 6.9e-71 271.2 173 86.1
CSS0021251 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 8.4e-69 264.2 169 84.6
CSS0032982 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 9.6e-65 250.8 176 77.8
vmacro11232 Vaccinium macrocarpon HOM05D000104 ORTHO05D003467 7.9e-59 231.1 152 78.9
Hma1.2p1_0392F.1_g143010 Hydrangea macrophylla HOM05D000104 ORTHO05D003467 1.0e-58 230.7 163 72.4
Cc08_g00060 Coffea canephora HOM05D000104 ORTHO05D003467 3.9e-58 228.8 152 77.6
GSVIVG01035901001 Vitis vinifera HOM05D000104 ORTHO05D003467 8.7e-58 227.6 152 73.0
Manes.03G010400 Manihot esculenta HOM05D000104 ORTHO05D003467 1.5e-57 226.9 152 74.3
CiPaw.08G007100 Carya illinoinensis HOM05D000104 ORTHO05D003467 1.9e-57 226.5 152 73.7
Eucgr.G00556 Eucalyptus grandis HOM05D000104 ORTHO05D003467 3.3e-57 225.7 152 76.3
ClCG05G016460 Citrullus lanatus HOM05D000104 ORTHO05D003467 1.3e-56 223.8 166 69.3
CSS0003293 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 3.7e-56 222.2 152 77.0
Manes.16G127700 Manihot esculenta HOM05D000104 ORTHO05D003467 1.8e-55 219.9 171 67.8
Ciclev10010331m.g Citrus clementina HOM05D000104 ORTHO05D003467 3.1e-55 219.2 152 73.0
Rhsim07G0163100 Rhododendron simsii HOM05D000104 ORTHO05D003467 3.1e-55 219.2 153 73.2
PGR044G1954 Punica granatum HOM05D000104 ORTHO05D003467 4.0e-55 218.8 163 69.9
Rhsim02G0208200 Rhododendron simsii HOM05D000104 ORTHO05D003467 6.9e-55 218.0 167 71.3
Gohir.D07G035100 Gossypium hirsutum HOM05D000104 ORTHO05D003467 9.0e-55 217.6 152 71.1
Gorai.001G036900 Gossypium raimondii HOM05D000104 ORTHO05D003467 9.0e-55 217.6 152 71.1
Sed0013682 Sechium edule HOM05D000104 ORTHO05D003467 9.0e-55 217.6 166 68.7
Dinv16472 Davidia involucrata HOM05D000104 ORTHO05D003467 1.2e-54 217.2 152 73.7
Potri.006G262200 Populus trichocarpa HOM05D000104 ORTHO05D003467 1.2e-54 217.2 156 73.1
Haze_21436 Corylus avellana HOM05D000104 ORTHO05D003467 1.5e-54 216.9 152 71.7
Duzib150G0247 Durio zibethinus HOM05D000104 ORTHO05D003467 1.5e-54 216.9 152 69.7
Oeu056768.1 Olea europaea HOM05D000104 ORTHO05D003467 1.5e-54 216.9 171 64.9
EL10Ac2g04134 Beta vulgaris HOM05D000104 ORTHO05D003467 4.5e-54 215.3 153 69.9
Sc09g0010480 Simmondsia chinensis HOM05D000104 ORTHO05D003467 4.5e-54 215.3 166 66.3
Potri.018G021100 Populus trichocarpa HOM05D000104 ORTHO05D003467 7.6e-54 214.5 157 70.7
Ah.10g035570 Amaranthus hybridus HOM05D000104 ORTHO05D003467 1.0e-53 214.2 152 71.7
Nn2g12306 Nelumbo nucifera HOM05D000104 ORTHO05D003467 1.7e-53 213.4 152 73.0
Sabra06G0204500 Salix brachista HOM05D000104 ORTHO05D003467 1.7e-53 213.4 156 72.4
Thecc.09G017400 Theobroma cacao HOM05D000104 ORTHO05D003467 1.7e-53 213.4 152 68.4
TWI63G1656 Tripterygium wilfordii HOM05D000104 ORTHO05D003467 2.2e-53 213.0 152 70.4
Prupe.1G391600 Prunus persica HOM05D000104 ORTHO05D003467 2.9e-53 212.6 152 69.1
Nitab4.5_0002973g0030 Nicotiana tabacum HOM05D000104 ORTHO05D003467 4.9e-53 211.8 169 68.0
TAR625G0155 Trochodendron aralioides HOM05D000104 ORTHO05D003467 1.1e-52 210.7 152 70.4
MELO3C016973.2 Cucumis melo HOM05D000104 ORTHO05D003467 1.4e-52 210.3 166 66.3
Hund03464 Selenicereus undatus HOM05D000104 ORTHO05D003467 1.4e-52 210.3 152 69.7
arahy.Tifrunner.gnm1.ann1.QU94QB Arachis hypogaea HOM05D000104 ORTHO05D003467 1.9e-52 209.9 152 71.1
Oeu012636.1 Olea europaea HOM05D000104 ORTHO05D003467 1.9e-52 209.9 152 69.7
TWI32G0850 Tripterygium wilfordii HOM05D000104 ORTHO05D003467 2.5e-52 209.5 152 71.1
Sabra18G0023400 Salix brachista HOM05D000104 ORTHO05D003467 3.2e-52 209.1 152 70.4
MSTRG.11592 Avicennia marina HOM05D000104 ORTHO05D003467 4.2e-52 208.8 152 69.1
CsaV3_4G036700 Cucumis sativus L. HOM05D000104 ORTHO05D003467 7.1e-52 208.0 166 65.7
Sed0022321 Sechium edule HOM05D000104 ORTHO05D003467 7.1e-52 208.0 166 67.5
Nitab4.5_0000486g0110 Nicotiana tabacum HOM05D000104 ORTHO05D003467 1.6e-51 206.8 169 66.9
QL02p019684 Quercus lobata HOM05D000104 ORTHO05D003467 1.6e-51 206.8 152 69.7
COL.COLO4_18937 Corchorus olitorius HOM05D000104 ORTHO05D003467 4.6e-51 205.3 152 66.4
AUR62031587 Chenopodium quinoa HOM05D000104 ORTHO05D003467 6.0e-51 204.9 153 66.7
Migut.A00006 Erythranthe guttata HOM05D000104 ORTHO05D003467 6.0e-51 204.9 152 69.1
Glyma.06G063400 Glycine max HOM05D000104 ORTHO05D003467 7.9e-51 204.5 152 67.8
Lj7A730T43 Lonicera japonica HOM05D000104 ORTHO05D003467 7.9e-51 204.5 156 69.9
Nitab4.5_0002503g0110 Nicotiana tabacum HOM05D000104 ORTHO05D003467 7.9e-51 204.5 151 68.9
Oeu000758.1 Olea europaea HOM05D000104 ORTHO05D003467 1.3e-50 203.8 151 67.5
RcHm_v2.0_Chr6g0299661 Rosa chinensis HOM05D000104 ORTHO05D003467 1.3e-50 203.8 156 67.3
Hund19597 Selenicereus undatus HOM05D000104 ORTHO05D003467 1.3e-50 203.8 154 66.9
AUR62012463 Chenopodium quinoa HOM05D000104 ORTHO05D003467 2.3e-50 203.0 153 66.0
Solyc06g065730.3 Solanum lycopersicum HOM05D000104 ORTHO05D003467 2.3e-50 203.0 163 64.4
Sopen06g024260 Solanum pennellii HOM05D000104 ORTHO05D003467 2.3e-50 203.0 163 64.4
Cpa.g.sc127.15 Carica papaya HOM05D000104 ORTHO05D003467 5.1e-50 201.8 152 69.7
FAN15G1888 Fragaria x ananassa HOM05D000104 ORTHO05D003467 5.1e-50 201.8 164 64.6
vmacro05141 Vaccinium macrocarpon HOM05D000104 ORTHO05D003467 5.1e-50 201.8 176 61.9
FvH4_2g40920 Fragaria vesca HOM05D005818 ORTHO05D003467 8.7e-50 201.1 156 67.3
Glyma.04G062400 Glycine max HOM05D000104 ORTHO05D003467 1.1e-49 200.7 152 67.1
FAN20G2022 Fragaria x ananassa HOM05D000104 ORTHO05D003467 2.5e-49 199.5 156 67.3
FAN27G0005 Fragaria x ananassa HOM05D000104 ORTHO05D003467 3.3e-49 199.1 156 67.3
HanXRQChr11g0353801 Helianthus annuus HOM05D000104 ORTHO05D003467 3.3e-49 199.1 176 60.8
Ca_15766_v3 Cicer arietinum L. HOM05D000104 ORTHO05D003467 7.4e-49 198.0 152 67.8
Gohir.A13G179800 Gossypium hirsutum HOM05D000104 ORTHO05D003467 7.4e-49 198.0 166 63.9
MD15G1037700 Malus domestica HOM05D000104 ORTHO05D003467 9.6e-49 197.6 154 66.2
Gohir.D13G187900 Gossypium hirsutum HOM05D000104 ORTHO05D003467 1.3e-48 197.2 166 63.9
Gorai.010G244100 Gossypium raimondii HOM05D000104 ORTHO05D003467 1.3e-48 197.2 166 63.9
THA.LOC104803635 Tarenaya hassleriana HOM05D000104 ORTHO05D003467 1.3e-48 197.2 171 60.8
MD08G1058800 Malus domestica HOM05D000104 ORTHO05D003467 1.6e-48 196.8 154 65.6
CAN.G199.65 Capsicum annuum HOM05D000104 ORTHO05D003467 4.8e-48 195.3 163 63.8
Lalb_Chr08g0244361 Lupinus albus HOM05D000104 ORTHO05D003467 4.8e-48 195.3 152 65.1
Phvul.009G088700 Phaseolus vulgaris HOM05D000104 ORTHO05D003467 4.8e-48 195.3 154 66.2
RcHm_v2.0_Chr3g0455421 Rosa chinensis HOM05D000104 ORTHO05D003467 4.8e-48 195.3 157 65.6
TPR.G3131 Trifolium pratense HOM05D000104 ORTHO05D003467 6.2e-48 194.9 152 67.1
ECA248G2891 Erigeron canadensis HOM05D000104 ORTHO05D003467 1.8e-47 193.4 175 61.1
Aqoxy2G02630 Aquilegia oxysepala HOM05D000104 ORTHO05D003467 5.3e-47 191.8 154 64.9
Peaxi162Scf00632g00012 Petunia axillaris HOM05D000104 ORTHO05D003467 5.3e-47 191.8 169 63.9
Medtr3g106210 Medicago truncatula HOM05D000104 ORTHO05D003467 6.9e-47 191.4 153 66.7
HanXRQChr01g0030671 Helianthus annuus HOM05D000104 ORTHO05D003467 9.0e-47 191.0 176 60.2
Lsat_1_v5_gn_1_42900 Lactuca sativa HOM05D000104 ORTHO05D003467 9.0e-47 191.0 176 60.2
Actinidia22307 Actinidia chinensis HOM05D000104 ORTHO05D003467 2.6e-46 189.5 171 64.9
Ah.16g104930 Amaranthus hybridus HOM05D000104 ORTHO05D003467 4.5e-46 188.7 173 60.1
Lalb_Chr23g0268291 Lupinus albus HOM05D000104 ORTHO05D003467 5.8e-46 188.3 170 57.6
SGA_v2.0_scaffold20G09081 Striga asiatica HOM05D000104 ORTHO05D003467 7.6e-46 188.0 176 57.4
Aa31sc100G10 Aethionema arabicum HOM05D000104 ORTHO05D003467 2.2e-45 186.4 170 58.8
DCAR_003002 Daucus carota HOM05D000104 ORTHO05D003467 2.2e-45 186.4 157 64.3
Lj1g0020904 Lotus japonicus HOM05D000104 ORTHO05D003467 2.2e-45 186.4 155 64.5
Peaxi162Scf00430g00415 Petunia axillaris HOM05D000104 ORTHO05D003467 3.8e-45 185.7 179 58.1
Gohir.A07G031300 Gossypium hirsutum HOM05D000104 ORTHO05D003467 5.0e-45 185.3 152 64.5
Atru.chr7.2524 Acer truncatum HOM05D000104 ORTHO05D003467 8.4e-45 184.5 154 66.2
Solyc08g029130.3 Solanum lycopersicum HOM05D000104 ORTHO05D003467 7.1e-44 181.4 169 59.2
Sopen08g010020 Solanum pennellii HOM05D000104 ORTHO05D003467 7.1e-44 181.4 169 59.2
THA.LOC104803854 Tarenaya hassleriana HOM05D000104 ORTHO05D003467 7.1e-44 181.4 171 57.3
AT2G25170 Arabidopsis thaliana HOM05D000104 ORTHO05D003467 1.2e-43 180.6 170 58.2
VMungo1309G2115 Vigna mungo HOM05D000104 ORTHO05D003467 1.2e-43 180.6 155 63.9
PSO384G0886 Papaver somniferum HOM05D000104 ORTHO05D003467 2.1e-43 179.9 153 62.1
DCAR_007677 Daucus carota HOM05D000104 ORTHO05D003467 3.5e-43 179.1 152 62.5
PSO339G0671 Papaver somniferum HOM05D000104 ORTHO05D003467 3.5e-43 179.1 153 62.1
Carub.0004s0475 Capsella rubella HOM05D000104 ORTHO05D003467 6.1e-43 178.3 170 57.1
Psat5g031880 Pisum sativum HOM05D000104 ORTHO05D003467 6.1e-43 178.3 154 62.3
CARHR116490 Cardamine hirsuta HOM05D000104 ORTHO05D003467 1.8e-42 176.8 170 57.1
AL4G16380 Arabidopsis lyrata HOM05D000104 ORTHO05D003467 5.1e-42 175.3 170 56.5
BcaC07g40886 Brassica carinata HOM05D000104 ORTHO05D003467 1.3e-40 170.6 152 62.5
C08p38830 Brassica napus HOM05D000104 ORTHO05D003467 1.3e-40 170.6 152 62.5
Lalb_Chr24g0402041 Lupinus albus HOM05D000104 ORTHO05D003467 4.8e-40 168.7 165 55.8
A09p55830 Brassica napus HOM05D000104 ORTHO05D003467 8.2e-40 167.9 152 61.8
BcaB08g35151 Brassica carinata HOM05D000104 ORTHO05D003467 1.4e-39 167.2 152 61.8
Sp4g04150 Schrenkiella parvula HOM05D000104 ORTHO05D003467 1.4e-39 167.2 152 61.2
Thhalv10000014m.g Eutrema salsugineum HOM05D000104 ORTHO05D003467 1.8e-39 166.8 170 56.5
BolC8t51453H Brassica oleracea HOM05D000104 ORTHO05D003467 4.1e-39 165.6 154 61.7
Lalb_Chr22g0361401 Lupinus albus HOM05D000104 ORTHO05D003467 2.0e-38 163.3 165 52.1
ATR1153G016 Amborella trichopoda HOM05D000104 ORTHO05D003467 3.4e-38 162.5 174 55.7
BraA09t40986Z Brassica rapa HOM05D000104 ORTHO05D003467 1.0e-37 161.0 154 60.4
Psat6g027200 Pisum sativum HOM05D000104 ORTHO05D003467 5.1e-34 148.7 155 54.2
CDE06G2391 Ceratophyllum demersum HOM05D000104 ORTHO05D003467 1.8e-31 140.2 155 52.3
SEGI_33990 Sequoiadendron giganteum HOM05D000104 ORTHO05D003467 5.0e-29 132.1 180 46.7
Nitab4.5_0003811g0020 Nicotiana tabacum HOM05D000104 ORTHO05D003467 3.0e-26 122.9 86 72.1
HPP92_004609 Vanilla planifolia HOM05D000104 ORTHO05D003467 1.1e-25 120.9 156 47.4
Phvul.001G046100 Phaseolus vulgaris HOM05D000104 ORTHO05D003467 5.3e-23 112.1 159 43.4
Glyma.17G217300 Glycine max HOM05D000104 ORTHO05D003467 9.1e-23 111.3 152 44.7
AT4G31900 Arabidopsis thaliana HOM05D000104 ORTHO05D003467 1.7e-21 107.1 184 40.8
Medtr1g013190 Medicago truncatula HOM05D000104 ORTHO05D003467 7.2e-20 101.7 174 39.7
Ca_13055_v3 Cicer arietinum L. HOM05D000104 ORTHO05D003467 9.4e-20 101.3 115 48.7
VMungo0647G2573 Vigna mungo HOM05D000104 ORTHO05D003467 9.4e-20 101.3 152 42.1
Thhalv10027006m.g Eutrema salsugineum HOM05D000104 ORTHO05D003467 5.2e-18 95.5 200 34.0
SMO200G0085 Selaginella moellendorffii HOM05D000104 ORTHO05D003467 5.2e-18 95.5 178 40.4
Carub.0007s0864 Capsella rubella HOM05D000104 ORTHO05D003467 1.5e-17 94.0 181 36.5
AL7G20000 Arabidopsis lyrata HOM05D000104 ORTHO05D003467 2.0e-17 93.6 164 41.5
Sp7g29720 Schrenkiella parvula HOM05D000104 ORTHO05D003467 1.7e-16 90.5 155 42.6
THA.LOC104804837 Tarenaya hassleriana HOM05D000104 ORTHO05D003467 6.3e-16 88.6 86 57.0
SMO228G0183 Selaginella moellendorffii HOM05D000104 ORTHO05D003467 1.8e-15 87.0 171 35.7
RcHm_v2.0_Chr3g0495041 Rosa chinensis HOM05D000104 ORTHO05D003467 7.0e-15 85.1 69 60.9
AL7G19990 Arabidopsis lyrata HOM05D000104 ORTHO05D003467 2.0e-14 83.6 199 35.7
TPR.G38889 Trifolium pratense HOM05D000104 ORTHO05D003467 4.5e-14 82.4 154 37.7
Pp3c21_10800 Physcomitrium patens HOM05D000104 ORTHO05D003467 7.7e-14 81.6 182 34.1
Pp3c18_19040 Physcomitrium patens HOM05D000104 ORTHO05D003467 2.9e-13 79.7 182 33.0
Pp3c18_19045 Physcomitrium patens HOM05D000104 ORTHO05D003467 2.9e-13 79.7 182 33.0
Mapoly0010s0012 Marchantia polymorpha HOM05D000104 ORTHO05D003467 5.0e-13 79.0 128 41.4
BcaC09g51983 Brassica carinata HOM05D000104 ORTHO05D003467 6.5e-13 78.6 192 34.9
A01p06320 Brassica napus HOM05D000104 ORTHO05D003467 1.9e-12 77.0 202 33.2
BraA01t00598Z Brassica rapa HOM05D000104 ORTHO05D003467 1.9e-12 77.0 212 32.5
C01p06980 Brassica napus HOM05D000104 ORTHO05D003467 2.5e-12 76.6 214 32.2
FAN26G0509 Fragaria x ananassa HOM05D006007 ORTHO05D003467 7.2e-12 75.1 71 52.1
vmacro05139 Vaccinium macrocarpon HOM05D000104 ORTHO05D003467 4.7e-11 72.4 57 57.9
BolC1t00694H Brassica oleracea HOM05D000104 ORTHO05D003467 8.0e-11 71.6 222 30.6
A01p06340 Brassica napus HOM05D000104 ORTHO05D003467 2.8e-08 63.2 172 31.4
BraA01t00599Z Brassica rapa HOM05D000104 ORTHO05D003467 2.8e-08 63.2 172 31.4
HPP92_004615 Vanilla planifolia HOM05D000104 ORTHO05D003467 2.8e-08 63.2 103 36.9
C01p07000 Brassica napus HOM05D000104 ORTHO05D003467 1.8e-07 60.5 172 30.8
BcaC09g51981 Brassica carinata HOM05D000104 ORTHO05D003467 5.4e-07 58.9 179 30.2
BolC1t00695H Brassica oleracea HOM05D000104 ORTHO05D003467 9.1e-07 58.2 179 30.2
Os06g0183800 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D003467 9.1e-07 58.2 63 49.2


User provided reference genes

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