Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028024 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 8.9e-148 526.9 271 100.0
Actinidia36852 Actinidia chinensis HOM05D005498 ORTHO05D006719 2.8e-93 345.9 288 70.1
CSS0015612 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 3.2e-89 332.4 288 67.7
Dinv13692 Davidia involucrata HOM05D005498 ORTHO05D006719 9.4e-89 330.9 282 67.7
CSS0017542 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 2.3e-87 326.2 272 71.0
Nitab4.5_0000976g0330 Nicotiana tabacum HOM05D005498 ORTHO05D006719 6.7e-87 324.7 288 65.3
Rhsim12G0182600 Rhododendron simsii HOM05D005498 ORTHO05D006719 5.3e-84 315.1 288 65.6
Cc04_g05550 Coffea canephora HOM05D005498 ORTHO05D006719 1.5e-83 313.5 288 63.9
TAR622G0889 Trochodendron aralioides HOM05D005498 ORTHO05D006719 2.2e-82 309.7 288 63.9
Lj9A489T67 Lonicera japonica HOM05D005498 ORTHO05D006719 5.0e-82 308.5 309 60.2
Haze_12543 Corylus avellana HOM05D005498 ORTHO05D006719 8.5e-82 307.8 286 62.2
PGR119G1930 Punica granatum HOM05D005498 ORTHO05D006719 1.1e-81 307.4 288 62.5
Nitab4.5_0007669g0040 Nicotiana tabacum HOM05D005498 ORTHO05D006719 1.4e-81 307.0 288 61.8
CsaV3_6G007610 Cucumis sativus L. HOM05D005498 ORTHO05D006719 5.5e-81 305.1 287 61.7
Prupe.1G210100 Prunus persica HOM05D005498 ORTHO05D006719 7.2e-81 304.7 288 61.5
Thecc.01G236700 Theobroma cacao HOM05D005498 ORTHO05D006719 9.4e-81 304.3 287 61.0
CiPaw.05G096800 Carya illinoinensis HOM05D005498 ORTHO05D006719 1.6e-80 303.5 288 61.8
PGSC0003DMG400014166 Solanum tuberosum HOM05D005498 ORTHO05D006719 6.1e-80 301.6 288 62.8
Solyc03g117940.3 Solanum lycopersicum HOM05D005498 ORTHO05D006719 1.8e-79 300.1 288 62.5
Duzib264G0012 Durio zibethinus HOM05D005498 ORTHO05D006719 3.9e-79 298.9 286 61.5
Gohir.A10G154800 Gossypium hirsutum HOM05D005498 ORTHO05D006719 3.9e-79 298.9 295 59.3
Gohir.D10G111100 Gossypium hirsutum HOM05D005498 ORTHO05D006719 3.9e-79 298.9 295 59.3
Gorai.011G122500 Gossypium raimondii HOM05D005498 ORTHO05D006719 3.9e-79 298.9 295 59.3
CAN.G1008.34 Capsicum annuum HOM05D005498 ORTHO05D006719 5.2e-79 298.5 287 61.3
Sed0026884 Sechium edule HOM05D005498 ORTHO05D006719 8.8e-79 297.7 280 61.1
Sopen03g036840 Solanum pennellii HOM05D005498 ORTHO05D006719 1.5e-78 297.0 288 62.2
Manes.08G098200 Manihot esculenta HOM05D005498 ORTHO05D006719 2.6e-78 296.2 287 61.3
Ciclev10028992m.g Citrus clementina HOM05D005498 ORTHO05D006719 4.4e-78 295.4 288 61.5
SGA_v2.0_scaffold37G14665 Striga asiatica HOM05D005498 ORTHO05D006719 4.4e-78 295.4 288 60.4
Nn3g16174 Nelumbo nucifera HOM05D005498 ORTHO05D006719 4.8e-77 292.0 288 60.8
Hund15325 Selenicereus undatus HOM05D005498 ORTHO05D006719 6.3e-77 291.6 301 59.1
Migut.I00649 Erythranthe guttata HOM05D005498 ORTHO05D006719 1.4e-76 290.4 287 59.2
THA.LOC104820204 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 5.3e-76 288.5 281 58.7
TWI36G1055 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 5.3e-76 288.5 286 59.1
Glyma.20G075100 Glycine max HOM05D005498 ORTHO05D006719 1.2e-75 287.3 287 59.9
TWI75G0967 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 1.2e-75 287.3 286 59.4
Aqoxy3G01715 Aquilegia oxysepala HOM05D005498 ORTHO05D006719 2.0e-75 286.6 271 60.9
MD13G1135200 Malus domestica HOM05D005498 ORTHO05D006719 2.0e-75 286.6 288 58.7
Potri.003G158800 Populus trichocarpa HOM05D005498 ORTHO05D006719 2.0e-75 286.6 287 58.5
MD16G1130900 Malus domestica HOM05D005498 ORTHO05D006719 4.5e-75 285.4 288 58.7
Eucgr.J01697 Eucalyptus grandis HOM05D005498 ORTHO05D006719 5.9e-75 285.0 266 62.0
SGA_v2.0_scaffold5G02818 Striga asiatica HOM05D005498 ORTHO05D006719 5.9e-75 285.0 293 58.0
Lj3g0014785 Lotus japonicus HOM05D005498 ORTHO05D006719 1.0e-74 284.3 265 62.6
arahy.Tifrunner.gnm1.ann1.JCC7XL Arachis hypogaea HOM05D005498 ORTHO05D006719 1.3e-74 283.9 294 57.8
TWI75G1441 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 1.3e-74 283.9 286 58.7
arahy.Tifrunner.gnm1.ann1.LXGX9H Arachis hypogaea HOM05D005498 ORTHO05D006719 2.2e-74 283.1 294 57.8
MBI07_g11055_MAGBIO Magnolia biondii HOM05D005498 ORTHO05D006719 2.2e-74 283.1 288 58.7
ATR0582G093 Amborella trichopoda HOM05D005498 ORTHO05D006719 6.5e-74 281.6 281 60.1
MSTRG.22826 Avicennia marina HOM05D005498 ORTHO05D006719 6.5e-74 281.6 288 58.3
Sabra03G0115200 Salix brachista HOM05D005498 ORTHO05D006719 6.5e-74 281.6 282 58.5
EL10Ac2g02403 Beta vulgaris HOM05D005498 ORTHO05D006719 2.5e-73 279.6 290 61.0
Glyma.10G123200 Glycine max HOM05D005498 ORTHO05D006719 5.5e-73 278.5 287 58.5
Sabra01G0050700 Salix brachista HOM05D005498 ORTHO05D006719 5.5e-73 278.5 317 54.3
PSO017G5587 Papaver somniferum HOM05D005498 ORTHO05D006719 7.2e-73 278.1 290 57.2
Ca_04134_v3 Cicer arietinum L. HOM05D005498 ORTHO05D006719 1.6e-72 276.9 281 59.4
Medtr6g004180 Medicago truncatula HOM05D005498 ORTHO05D006719 1.6e-72 276.9 288 59.0
LjContig00470g0019612 Lotus japonicus HOM05D005498 ORTHO05D006719 2.7e-72 276.2 265 61.1
HPP92_001926 Vanilla planifolia HOM05D005498 ORTHO05D006356 3.6e-72 275.8 288 57.3
PSO478G3668 Papaver somniferum HOM05D005498 ORTHO05D006719 4.7e-72 275.4 275 58.9
Potri.001G072100 Populus trichocarpa HOM05D005498 ORTHO05D006719 1.0e-71 274.2 287 56.4
ECA246G1673 Erigeron canadensis HOM05D005498 ORTHO05D006719 1.8e-71 273.5 280 58.6
Phvul.003G001500 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 2.3e-71 273.1 287 56.4
GSVIVG01001138001 Vitis vinifera HOM05D005498 ORTHO05D006719 3.3e-70 269.2 287 55.7
Lalb_Chr21g0307771 Lupinus albus HOM05D005498 ORTHO05D006719 4.4e-70 268.9 288 56.9
RcHm_v2.0_Chr4g0428191 Rosa chinensis HOM05D005498 ORTHO05D006719 5.7e-70 268.5 288 57.3
AUR62037729 Chenopodium quinoa HOM05D005498 ORTHO05D006719 7.5e-70 268.1 287 58.2
FvH4_4g21991 Fragaria vesca HOM05D005498 ORTHO05D006719 9.7e-70 267.7 288 56.9
FAN07G2790 Fragaria x ananassa HOM05D005498 ORTHO05D006719 9.7e-70 267.7 288 56.9
MELO3C022370.2 Cucumis melo HOM05D005498 ORTHO05D006719 2.2e-69 266.5 280 57.1
AL1G20310 Arabidopsis lyrata HOM05D005498 ORTHO05D006719 8.2e-69 264.6 280 57.5
FAN17G1337 Fragaria x ananassa HOM05D005498 ORTHO05D006719 8.2e-69 264.6 288 56.2
CDE11G0700 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 1.8e-68 263.5 286 55.6
HanXRQChr05g0154501 Helianthus annuus HOM05D005498 ORTHO05D006719 7.0e-68 261.5 295 55.6
Lsat_1_v5_gn_5_9301 Lactuca sativa HOM05D005498 ORTHO05D006719 1.2e-67 260.8 291 55.7
Psat1g052840 Pisum sativum HOM05D005498 ORTHO05D006719 1.2e-67 260.8 281 56.6
VMungo0251G3521 Vigna mungo HOM05D005498 ORTHO05D006719 1.2e-67 260.8 287 54.7
THA.LOC104823693 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 2.0e-67 260.0 291 54.0
TPR.G25230 Trifolium pratense HOM05D005498 ORTHO05D006719 4.5e-67 258.8 281 55.5
CARHR009720 Cardamine hirsuta HOM05D005498 ORTHO05D006719 5.9e-67 258.5 277 55.6
Thhalv10008494m.g Eutrema salsugineum HOM05D005498 ORTHO05D006719 2.2e-66 256.5 281 56.2
HanXRQChr06g0174511 Helianthus annuus HOM05D005498 ORTHO05D006719 5.0e-66 255.4 282 57.4
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 8.5e-66 254.6 266 56.8
AT1G09760 Arabidopsis thaliana HOM05D005498 ORTHO05D006719 2.5e-65 253.1 280 56.1
Sp1g08350 Schrenkiella parvula HOM05D005498 ORTHO05D006719 2.5e-65 253.1 281 57.3
Carub.0001s0910 Capsella rubella HOM05D005498 ORTHO05D006719 3.2e-65 252.7 275 55.6
Os02g0234800 Oryza sativa ssp. japonica HOM05D005498 ORTHO05D006719 5.5e-65 251.9 288 52.8
C08p13170 Brassica napus HOM05D005498 ORTHO05D006719 1.6e-64 250.4 277 54.9
BolC8t48946H Brassica oleracea HOM05D005498 ORTHO05D006719 1.6e-64 250.4 277 54.9
BraA08t35348Z Brassica rapa HOM05D005498 ORTHO05D006719 1.6e-64 250.4 277 55.6
COL.COLO4_24568 Corchorus olitorius HOM05D005498 ORTHO05D006719 1.6e-64 250.4 285 54.4
A08p34360 Brassica napus HOM05D005498 ORTHO05D006719 4.7e-64 248.8 277 55.6
Peaxi162Scf00314g00830 Petunia axillaris HOM05D005498 ORTHO05D006719 1.0e-63 247.7 221 66.1
A09p65320 Brassica napus HOM05D005498 ORTHO05D006719 3.0e-63 246.1 277 54.5
Lalb_Chr02g0144691 Lupinus albus HOM05D005498 ORTHO05D006719 3.0e-63 246.1 288 52.8
Atru.chr12.1486 Acer truncatum HOM05D005498 ORTHO05D006719 4.0e-63 245.7 280 56.4
Actinidia08921 Actinidia chinensis HOM05D005498 ORTHO05D006719 6.8e-63 245.0 183 76.5
Zm00001eb064600 Zea mays HOM05D005498 ORTHO05D006719 6.8e-63 245.0 288 52.4
A06p06430 Brassica napus HOM05D005498 ORTHO05D006719 2.0e-62 243.4 281 54.4
BraA06t23854Z Brassica rapa HOM05D005498 ORTHO05D006719 2.0e-62 243.4 281 54.4
C08p49270 Brassica napus HOM05D005498 ORTHO05D006719 4.4e-62 242.3 277 53.8
BraA09t41876Z Brassica rapa HOM05D005498 ORTHO05D006719 4.4e-62 242.3 282 53.5
BcaC07g41860 Brassica carinata HOM05D005498 ORTHO05D006719 5.7e-62 241.9 277 54.2
C05p07830 Brassica napus HOM05D005498 ORTHO05D006719 9.8e-62 241.1 281 53.7
BolC5t29534H Brassica oleracea HOM05D005498 ORTHO05D006719 9.8e-62 241.1 281 53.7
BolC8t52462H Brassica oleracea HOM05D005498 ORTHO05D006719 9.8e-62 241.1 282 53.2
Sc04g0000070 Simmondsia chinensis HOM05D005498 ORTHO05D006719 3.7e-61 239.2 261 56.7
Hund15317 Selenicereus undatus HOM05D005498 ORTHO05D006719 1.8e-60 236.9 259 58.7
Sc04g0000010 Simmondsia chinensis HOM05D005498 ORTHO05D006719 9.1e-60 234.6 248 57.7
Aa31LG1G5230 Aethionema arabicum HOM05D005498 ORTHO05D006719 2.0e-59 233.4 274 54.0
Mapoly0014s0064 Marchantia polymorpha HOM05D005498 ORTHO05D006719 7.7e-59 231.5 269 51.3
AUR62020276 Chenopodium quinoa HOM05D005498 ORTHO05D006719 7.2e-57 224.9 232 59.5
SalBow7G1334 Salvia bowleyana HOM05D005498 ORTHO05D006719 7.2e-57 224.9 293 51.5
Pp3c20_1630 Physcomitrium patens HOM05D005498 ORTHO05D006719 1.2e-54 217.6 291 48.8
Pp3c8_21390 Physcomitrium patens HOM05D005498 ORTHO05D006719 7.0e-52 208.4 271 48.7
Pp3c23_20060 Physcomitrium patens HOM05D005498 ORTHO05D006719 2.9e-50 203.0 293 45.7
Cpa.g.sc2660.1 Carica papaya HOM05D005498 ORTHO05D006719 5.8e-46 188.7 173 61.3
Ah.10g024870 Amaranthus hybridus HOM05D005498 ORTHO05D006719 2.9e-45 186.4 173 60.1
Gorai.007G212800 Gossypium raimondii HOM05D005498 ORTHO05D006719 5.4e-44 182.2 188 54.8
unitig_8.g3047 Utricularia gibba HOM05D005498 ORTHO05D006719 1.8e-39 167.2 266 44.4
Phvul.009G235000 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 5.2e-39 165.6 169 58.6
Gorai.006G052400 Gossypium raimondii HOM05D005498 ORTHO05D006719 7.0e-36 155.2 170 54.1
AagrBONN_evm.TU.Sc2ySwM_362.2343 Anthoceros agrestis HOM05D005498 ORTHO05D006719 7.8e-35 151.8 224 42.0
Gohir.D11G198700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 2.3e-34 150.2 188 50.0
Gohir.D13G083750 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.1e-33 147.9 188 48.9
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 3.6e-32 142.9 304 36.5
Gohir.D13G071700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 3.6e-32 142.9 177 48.6
DCAR_021388 Daucus carota HOM05D005498 ORTHO05D006719 4.7e-32 142.5 145 59.3
Oeu027824.1 Olea europaea HOM05D005498 ORTHO05D006719 2.3e-31 140.2 270 38.9
SMO203G0044 Selaginella moellendorffii HOM05D005498 ORTHO05D006719 7.1e-28 128.6 173 45.1
Gorai.010G065400 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.1e-25 121.3 110 58.2
Cpa.g.sc38.27 Carica papaya HOM05D005498 ORTHO05D006719 1.9e-17 94.0 122 50.8
Ah.10g024860 Amaranthus hybridus HOM05D005498 ORTHO05D006719 9.6e-17 91.7 115 53.0
PRCOL_00001779 Prasinoderma coloniale HOM05D005498 ORTHO05D006719 1.8e-15 87.4 270 30.4
arahy.Tifrunner.gnm1.ann1.UV1K7Q Arachis hypogaea HOM05D005498 ORTHO05D006719 1.2e-14 84.7 93 50.5
MELO3C026686.2 Cucumis melo HOM05D005498 ORTHO05D006719 2.6e-14 83.6 56 75.0
FAN12G0959 Fragaria x ananassa HOM05D005498 ORTHO05D006719 3.8e-13 79.7 67 61.2
RcHm_v2.0_Chr4g0427471 Rosa chinensis HOM05D000753 ORTHO05D006719 3.5e-11 73.2 116 46.6
PSO591G0416 Papaver somniferum HOM05D005498 ORTHO05D006719 2.8e-08 63.5 76 52.6
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 1.8e-07 60.8 36 75.0


User provided reference genes

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