Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 7.4e-181 637.1 330 100.0
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 1.8e-179 632.5 330 99.1
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 1.2e-157 560.1 331 87.6
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 2.0e-157 559.3 330 87.9
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 2.8e-151 538.9 323 84.5
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 2.8e-151 538.9 328 82.0
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 1.4e-150 536.6 348 79.6
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 3.2e-147 525.4 330 80.6
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 2.0e-146 522.7 330 80.3
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 4.6e-146 521.5 330 80.3
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 3.9e-145 518.5 293 88.1
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 6.6e-145 517.7 332 78.6
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 3.3e-144 515.4 328 79.9
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 7.3e-144 514.2 330 78.2
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 9.5e-144 513.8 357 75.1
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 4.7e-143 511.5 329 79.9
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 1.4e-142 510.0 330 79.1
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 2.3e-142 509.2 328 79.3
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 4.0e-142 508.4 330 77.0
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 8.9e-142 507.3 327 78.9
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 1.2e-141 506.9 327 79.5
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 1.5e-141 506.5 330 79.1
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 2.6e-141 505.8 330 77.9
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 5.8e-141 504.6 328 78.7
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 9.8e-141 503.8 331 78.5
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 3.7e-140 501.9 329 77.8
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 3.7e-140 501.9 329 78.1
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 6.4e-140 501.1 328 77.7
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 6.4e-140 501.1 329 78.1
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.4e-139 500.0 329 78.1
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 4.1e-139 498.4 329 77.2
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 4.6e-138 495.0 328 76.5
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 4.6e-138 495.0 333 77.2
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 6.0e-138 494.6 331 77.3
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 3.9e-137 491.9 328 75.0
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 5.1e-137 491.5 321 79.1
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 6.6e-137 491.1 328 75.0
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 1.5e-136 490.0 328 75.0
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 1.9e-136 489.6 328 74.7
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 1.9e-136 489.6 328 75.3
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 3.3e-136 488.8 328 74.7
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 2.1e-135 486.1 279 88.9
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 2.8e-135 485.7 328 73.8
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 2.8e-135 485.7 328 74.1
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 3.6e-135 485.3 329 75.1
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 1.1e-134 483.8 333 76.3
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 1.4e-134 483.4 328 73.5
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 1.8e-134 483.0 323 77.1
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 2.3e-134 482.6 328 73.8
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 2.3e-134 482.6 329 74.5
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 2.3e-134 482.6 359 70.8
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 6.8e-134 481.1 330 75.8
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 8.9e-134 480.7 328 73.8
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 8.9e-134 480.7 329 72.6
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 8.9e-134 480.7 328 74.4
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 7.5e-133 477.6 329 72.0
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 1.3e-132 476.9 363 70.2
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.7e-132 476.5 328 73.2
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 3.7e-132 475.3 330 73.3
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 3.7e-132 475.3 330 73.6
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 6.4e-132 474.6 402 65.4
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.9e-131 473.0 328 72.6
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 4.1e-131 471.9 321 76.6
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 4.1e-131 471.9 328 72.9
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 2.3e-129 466.1 328 72.0
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 3.0e-129 465.7 330 72.4
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 5.1e-129 464.9 328 73.5
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 8.6e-129 464.2 327 72.2
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.1e-128 463.8 328 70.7
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.1e-128 463.8 328 72.6
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 1.1e-128 463.8 328 73.2
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.9e-128 463.0 328 70.4
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.9e-128 463.0 328 70.4
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 2.5e-128 462.6 323 72.4
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 3.3e-128 462.2 328 72.9
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 1.2e-127 460.3 328 72.9
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 4.7e-127 458.4 328 71.3
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 2.4e-126 456.1 327 70.3
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 2.4e-126 456.1 328 71.6
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 3.1e-126 455.7 328 71.3
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 1.2e-125 453.8 329 69.9
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 3.2e-123 445.7 318 72.3
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 6.0e-122 441.4 327 67.6
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 6.6e-121 438.0 328 68.3
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 8.7e-121 437.6 327 67.6
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 8.7e-121 437.6 327 67.0
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 8.7e-121 437.6 320 68.1
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 1.1e-120 437.2 329 67.5
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 1.5e-120 436.8 329 67.8
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 3.3e-120 435.6 327 67.3
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 4.3e-120 435.3 329 70.5
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 7.3e-120 434.5 327 67.0
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 7.3e-120 434.5 327 66.7
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.6e-119 433.3 327 66.7
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 2.1e-119 433.0 273 80.2
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 6.2e-119 431.4 322 70.5
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 1.4e-118 430.3 327 64.8
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 5.3e-118 428.3 327 65.1
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 9.9e-117 424.1 337 62.9
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 3.8e-116 422.2 328 67.1
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 9.3e-115 417.5 328 66.2
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 4.6e-114 415.2 329 65.7
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 6.0e-114 414.8 323 65.6
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 5.3e-110 401.7 325 62.8
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 1.2e-109 400.6 330 64.5
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 9.3e-107 391.0 325 63.7
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 3.9e-105 385.6 331 67.4
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 1.1e-102 377.5 324 64.2
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 1.7e-100 370.2 328 61.6
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 1.5e-96 357.1 276 68.8
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 1.3e-92 344.0 330 56.4
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 2.2e-92 343.2 320 56.6
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 2.3e-89 333.2 329 56.2
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.1e-88 330.9 321 56.1
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 3.7e-87 325.9 330 51.8
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 4.8e-87 325.5 321 56.1
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 2.3e-81 306.6 177 86.4
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 1.7e-76 290.4 198 74.7
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 3.8e-76 289.3 324 47.5
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 1.1e-70 271.2 331 51.7
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 1.2e-69 267.7 186 73.7
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.5e-67 260.0 199 69.8
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 4.2e-67 259.2 216 63.0
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 3.0e-65 253.1 276 45.7
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.6e-61 240.7 332 44.6
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 7.7e-61 238.4 274 52.2
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 2.1e-58 230.3 158 70.9
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 6.1e-58 228.8 299 43.8
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 5.2e-57 225.7 183 62.8
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 2.6e-56 223.4 142 74.6
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 6.3e-55 218.8 133 80.5
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 2.9e-52 209.9 131 77.1
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 3.6e-50 203.0 139 71.2
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.7e-47 194.1 131 74.8
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 3.7e-47 193.0 114 82.5
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 8.3e-47 191.8 147 68.7
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 1.0e-44 184.9 128 74.2
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 7.2e-43 178.7 269 41.3
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 8.0e-42 175.3 233 43.3
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 4.4e-40 169.5 97 81.4
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.3e-39 167.9 181 50.8
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 2.2e-39 167.2 262 36.3
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 1.1e-38 164.9 139 61.9
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 1.5e-35 154.5 144 55.6
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 6.2e-34 149.1 153 48.4
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 3.1e-33 146.7 202 42.6
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.5e-32 144.4 147 51.0
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 3.5e-29 133.3 127 52.8
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 3.5e-29 133.3 82 73.2
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 8.6e-28 128.6 176 39.8
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 1.1e-27 128.3 117 58.1
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 1.2e-26 124.8 126 47.6
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 1.1e-25 121.7 198 42.9
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 9.8e-24 115.2 68 82.4
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 3.6e-18 96.7 87 58.6
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 3.6e-18 96.7 87 58.6
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 8.1e-18 95.5 76 63.2
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 2.9e-15 87.0 61 78.7
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 4.6e-13 79.7 121 44.6
BcaC07g36966 Brassica carinata HOM05D004465 ORTHO05D005450 7.3e-11 72.4 59 61.0
A08p37370 Brassica napus HOM05D004465 ORTHO05D005450 2.4e-09 67.4 54 61.1
SalBow2G0531 Salvia bowleyana HOM05D004465 ORTHO05D351996 2.4e-06 57.4 33 78.8


User provided reference genes

Program Settings