Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021964 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 2.7e-45 184.9 88 100.0
CSS0010909 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 2.4e-25 118.6 88 70.5
CSS0000811 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 2.9e-23 111.7 88 68.2
CSS0015848 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 3.2e-22 108.2 52 94.2
CSS0020415 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 4.6e-21 104.4 52 90.4
CSS0003600 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 1.5e-19 99.4 53 86.8
CSS0014106 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 1.5e-19 99.4 49 93.9
CSS0031271 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 1.5e-19 99.4 88 62.5
Actinidia11670 Actinidia chinensis HOM05D003451 ORTHO05D003918 1.9e-19 99.0 51 86.3
CSS0013826 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 4.3e-19 97.8 51 86.3
vmacro04126 Vaccinium macrocarpon HOM05D003451 ORTHO05D003918 1.3e-18 96.3 51 84.3
SalBow6G3934 Salvia bowleyana HOM05D003451 ORTHO05D003918 2.2e-18 95.5 53 77.4
Actinidia06925 Actinidia chinensis HOM05D003451 ORTHO05D003918 3.7e-18 94.7 51 82.4
Nitab4.5_0000159g0090 Nicotiana tabacum HOM05D003451 ORTHO05D003918 6.3e-18 94.0 53 77.4
Nitab4.5_0000531g0010 Nicotiana tabacum HOM05D003451 ORTHO05D003918 6.3e-18 94.0 53 77.4
MSTRG.12458 Avicennia marina HOM05D003451 ORTHO05D003918 8.2e-18 93.6 51 80.4
Oeu001483.1 Olea europaea HOM05D003451 ORTHO05D003918 1.8e-17 92.4 51 82.4
Rhsim01G0192600 Rhododendron simsii HOM05D003451 ORTHO05D003918 6.9e-17 90.5 52 76.9
Solyc06g065470.4 Solanum lycopersicum HOM05D003451 ORTHO05D003918 6.9e-17 90.5 60 68.3
MSTRG.17605 Avicennia marina HOM05D003451 ORTHO05D003918 9.0e-17 90.1 51 76.5
SalBow1G0548 Salvia bowleyana HOM05D003451 ORTHO05D003918 9.0e-17 90.1 50 78.0
SalBow1G0865 Salvia bowleyana HOM05D003451 ORTHO05D003918 9.0e-17 90.1 50 78.0
SalBow1G4695 Salvia bowleyana HOM05D003451 ORTHO05D003918 9.0e-17 90.1 50 78.0
Migut.D00628 Erythranthe guttata HOM05D003451 ORTHO05D003918 1.2e-16 89.7 51 78.4
Hma1.2p1_0390F.1_g142550 Hydrangea macrophylla HOM05D003451 ORTHO05D003918 1.2e-16 89.7 51 76.5
Sopen06g023960 Solanum pennellii HOM05D003451 ORTHO05D003918 1.2e-16 89.7 60 68.3
PGSC0003DMG400026119 Solanum tuberosum HOM05D003451 ORTHO05D003918 1.2e-16 89.7 60 68.3
Nitab4.5_0003158g0010 Nicotiana tabacum HOM05D003451 ORTHO05D003918 2.0e-16 89.0 52 73.1
Peaxi162Scf00268g01431 Petunia axillaris HOM05D003451 ORTHO05D003918 4.5e-16 87.8 51 74.5
SGA_v2.0_scaffold3G01477 Striga asiatica HOM05D003451 ORTHO05D003918 5.9e-16 87.4 52 73.1
Migut.N02344 Erythranthe guttata HOM05D003451 ORTHO05D003918 7.7e-16 87.0 51 72.5
HanXRQChr13g0401231 Helianthus annuus HOM05D003451 ORTHO05D003918 7.7e-16 87.0 51 74.5
GSVIVG01026504001 Vitis vinifera HOM05D003451 ORTHO05D003918 7.7e-16 87.0 51 76.5
Nn7g36360 Nelumbo nucifera HOM05D003451 ORTHO05D003918 1.0e-15 86.7 51 76.5
unitig_699.g19138 Utricularia gibba HOM05D003451 ORTHO05D003918 1.3e-15 86.3 50 76.0
DCAR_019964 Daucus carota HOM05D003451 ORTHO05D003918 1.7e-15 85.9 51 76.5
TAR369G0018 Trochodendron aralioides HOM05D003451 ORTHO05D003918 1.7e-15 85.9 51 76.5
unitig_27.g25002 Utricularia gibba HOM05D003451 ORTHO05D003918 2.9e-15 85.1 50 74.0
Cc01_g05030 Coffea canephora HOM05D003451 ORTHO05D003918 3.8e-15 84.7 51 72.5
HanXRQChr11g0351591 Helianthus annuus HOM05D003451 ORTHO05D003918 3.8e-15 84.7 51 72.5
Dinv22160 Davidia involucrata HOM05D003451 ORTHO05D003918 5.0e-15 84.3 50 76.0
Lsat_1_v5_gn_1_49181 Lactuca sativa HOM05D003451 ORTHO05D003918 5.0e-15 84.3 51 72.5
Lsat_1_v5_gn_6_25861 Lactuca sativa HOM05D003451 ORTHO05D003918 5.0e-15 84.3 51 70.6
Lj2A624G28 Lonicera japonica HOM05D003451 ORTHO05D003918 5.0e-15 84.3 51 72.5
Lj5C793G3 Lonicera japonica HOM05D003451 ORTHO05D003918 5.0e-15 84.3 51 72.5
Nn2g15160 Nelumbo nucifera HOM05D003451 ORTHO05D003918 5.0e-15 84.3 51 70.6
Dinv36234 Davidia involucrata HOM05D003451 ORTHO05D003918 1.1e-14 83.2 51 72.5
ECA233G6223 Erigeron canadensis HOM05D003451 ORTHO05D003918 1.1e-14 83.2 51 70.6
TAR623G1024 Trochodendron aralioides HOM05D003451 ORTHO05D003918 1.1e-14 83.2 51 72.5
HPP92_003156 Vanilla planifolia HOM05D003451 ORTHO05D003918 1.1e-14 83.2 51 72.5
Lj7A514T32 Lonicera japonica HOM05D003451 ORTHO05D003918 1.9e-14 82.4 51 70.6
HanXRQChr01g0029351 Helianthus annuus HOM05D003451 ORTHO05D003918 3.2e-14 81.6 46 76.1
CDE09G0232 Ceratophyllum demersum HOM05D003451 ORTHO05D003918 5.5e-14 80.9 51 68.6
PSO541G4141 Papaver somniferum HOM05D003451 ORTHO05D003918 5.5e-14 80.9 51 70.6
PSO675G7264 Papaver somniferum HOM05D003451 ORTHO05D003918 5.5e-14 80.9 51 70.6
Sed0009927 Sechium edule HOM05D003451 ORTHO05D003918 5.5e-14 80.9 49 71.4
Sc09g0000810 Simmondsia chinensis HOM05D003451 ORTHO05D003918 9.4e-14 80.1 53 66.0
Os05g0140500 Oryza sativa ssp. japonica HOM05D003451 ORTHO05D003918 1.2e-13 79.7 51 68.6
THA.LOC104817916 Tarenaya hassleriana HOM05D003451 ORTHO05D003918 1.6e-13 79.3 53 67.9
Eucgr.J00743 Eucalyptus grandis HOM05D003451 ORTHO05D003918 2.1e-13 79.0 55 67.3
PSO384G4628 Papaver somniferum HOM05D003451 ORTHO05D003918 2.1e-13 79.0 51 66.7
PGR102G1026 Punica granatum HOM05D003451 ORTHO05D003918 2.1e-13 79.0 53 69.8
SEGI_06162 Sequoiadendron giganteum HOM05D003451 ORTHO05D003918 2.7e-13 78.6 52 67.3
ClCG03G013000 Citrullus lanatus HOM05D003451 ORTHO05D003918 3.6e-13 78.2 49 69.4
MELO3C015160.2 Cucumis melo HOM05D003451 ORTHO05D003918 3.6e-13 78.2 49 69.4
CsaV3_1G043070 Cucumis sativus L. HOM05D003451 ORTHO05D003918 3.6e-13 78.2 49 69.4
Gohir.A09G110960 Gossypium hirsutum HOM05D003451 ORTHO05D003918 3.6e-13 78.2 53 69.8
Hund07469 Selenicereus undatus HOM05D003451 ORTHO05D003918 3.6e-13 78.2 55 61.8
Sopen11g008970 Solanum pennellii HOM05D000006 ORTHO05D000001 3.6e-13 78.2 48 68.8
Gohir.D09G107600 Gossypium hirsutum HOM05D003451 ORTHO05D003918 4.6e-13 77.8 53 69.8
THA.LOC104816872 Tarenaya hassleriana HOM05D003451 ORTHO05D003918 4.6e-13 77.8 56 62.5
Aqoxy2G00229 Aquilegia oxysepala HOM05D003451 ORTHO05D003918 6.1e-13 77.4 51 62.7
Manes.14G004400 Manihot esculenta HOM05D003451 ORTHO05D003918 6.1e-13 77.4 49 69.4
PSO339G2767 Papaver somniferum HOM05D003451 ORTHO05D003918 6.1e-13 77.4 51 64.7
Duzib168G0102 Durio zibethinus HOM05D003451 ORTHO05D003918 7.9e-13 77.0 53 67.9
Gohir.A05G073100 Gossypium hirsutum HOM05D003451 ORTHO05D003918 7.9e-13 77.0 53 67.9
Rhsim13G0217600 Rhododendron simsii HOM05D006939 ORTHO05D008616 7.9e-13 77.0 40 87.5
Atru.chr3.2648 Acer truncatum HOM05D003451 ORTHO05D003918 1.0e-12 76.6 53 67.9
Gohir.D05G076000 Gossypium hirsutum HOM05D003451 ORTHO05D003918 1.0e-12 76.6 53 67.9
Gorai.009G077300 Gossypium raimondii HOM05D003451 ORTHO05D003918 1.0e-12 76.6 53 67.9
Ciclev10016808m.g Citrus clementina HOM05D003451 ORTHO05D003918 1.8e-12 75.9 53 67.9
COL.COLO4_37539 Corchorus olitorius HOM05D003451 ORTHO05D003918 1.8e-12 75.9 53 67.9
Duzib170G0373 Durio zibethinus HOM05D003451 ORTHO05D003918 1.8e-12 75.9 53 66.0
Gorai.006G125200 Gossypium raimondii HOM05D003451 ORTHO05D003918 1.8e-12 75.9 52 69.2
TWI32G0677 Tripterygium wilfordii HOM05D003451 ORTHO05D003918 1.8e-12 75.9 53 67.9
TWI60G0042 Tripterygium wilfordii HOM05D003451 ORTHO05D003918 1.8e-12 75.9 53 67.9
Thecc.09G245200 Theobroma cacao HOM05D003451 ORTHO05D003918 3.9e-12 74.7 53 67.9
QL01p004066 Quercus lobata HOM05D003451 ORTHO05D003918 5.1e-12 74.3 51 66.7
Gohir.A13G218200 Gossypium hirsutum HOM05D003451 ORTHO05D003918 6.7e-12 73.9 53 66.0
Gorai.013G253000 Gossypium raimondii HOM05D003451 ORTHO05D003918 6.7e-12 73.9 53 66.0
Hund07468 Selenicereus undatus HOM05D003451 ORTHO05D003918 8.8e-12 73.6 51 62.7
Nitab4.5_0003160g0010 Nicotiana tabacum HOM05D003451 ORTHO05D003918 1.1e-11 73.2 41 78.0
EL10Ac4g10211 Beta vulgaris HOM05D003451 ORTHO05D003918 1.5e-11 72.8 51 60.8
Ah.06g193890 Amaranthus hybridus HOM05D003451 ORTHO05D003918 2.0e-11 72.4 54 63.0
Gohir.D13G221900 Gossypium hirsutum HOM05D003451 ORTHO05D003918 2.0e-11 72.4 53 64.2
Manes.06G162200 Manihot esculenta HOM05D003451 ORTHO05D003918 2.0e-11 72.4 49 65.3
Cpa.g.sc84.26 Carica papaya HOM05D003451 ORTHO05D003918 2.5e-11 72.0 53 64.2
TWI34G0098 Tripterygium wilfordii HOM05D003451 ORTHO05D003918 2.5e-11 72.0 53 64.2
CiPaw.14G116900 Carya illinoinensis HOM05D003451 ORTHO05D003918 3.3e-11 71.6 51 64.7
Zm00001eb417640 Zea mays HOM05D003451 ORTHO05D003918 3.3e-11 71.6 54 59.3
CiPaw.13G154800 Carya illinoinensis HOM05D003451 ORTHO05D003918 4.3e-11 71.2 51 62.7
THA.LOC104811180 Tarenaya hassleriana HOM05D003451 ORTHO05D003918 4.3e-11 71.2 51 62.7
Zm00001eb062000 Zea mays HOM05D003451 ORTHO05D003918 4.3e-11 71.2 43 69.8
AL1G59400 Arabidopsis lyrata HOM05D003451 ORTHO05D003918 5.7e-11 70.9 51 62.7
CARHR041670 Cardamine hirsuta HOM05D003451 ORTHO05D003918 5.7e-11 70.9 49 67.3
Cfa009811 Carpinus fangiana HOM05D003451 ORTHO05D003918 5.7e-11 70.9 51 62.7
AUR62039863 Chenopodium quinoa HOM05D003451 ORTHO05D003918 5.7e-11 70.9 50 60.0
Haze_23175 Corylus avellana HOM05D003451 ORTHO05D003918 5.7e-11 70.9 51 62.7
Pp3c11_21740 Physcomitrium patens HOM05D003451 ORTHO05D003918 7.4e-11 70.5 51 60.8
CSS0010395 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 1.3e-10 69.7 35 91.4
Ah.04g162060 Amaranthus hybridus HOM05D003451 ORTHO05D003918 1.7e-10 69.3 51 58.8
Mapoly0141s0030 Marchantia polymorpha HOM05D003451 ORTHO05D003918 1.7e-10 69.3 54 57.4
BcaB04g17193 Brassica carinata HOM05D003451 ORTHO05D003918 2.2e-10 68.9 54 59.3
BcaC08g43315 Brassica carinata HOM05D003451 ORTHO05D003918 2.2e-10 68.9 53 60.4
A06p02460 Brassica napus HOM05D003451 ORTHO05D003918 2.2e-10 68.9 53 60.4
C06p06630 Brassica napus HOM05D003451 ORTHO05D003918 2.2e-10 68.9 53 60.4
BolC6t35776H Brassica oleracea HOM05D003451 ORTHO05D003918 2.2e-10 68.9 53 60.4
BraA06t23452Z Brassica rapa HOM05D003451 ORTHO05D003918 2.2e-10 68.9 53 60.4
CANSAT54G1907 Cannabis sativa HOM05D003451 ORTHO05D003918 2.2e-10 68.9 54 61.1
Pp3c7_3000 Physcomitrium patens HOM05D003451 ORTHO05D003918 2.2e-10 68.9 51 58.8
Dinv39631 Davidia involucrata HOM05D003451 ORTHO05D003918 2.8e-10 68.6 50 60.0
Os03g0809900 Oryza sativa ssp. japonica HOM05D003451 ORTHO05D003918 2.8e-10 68.6 43 65.1
RcHm_v2.0_Chr5g0053031 Rosa chinensis HOM05D003451 ORTHO05D003918 2.8e-10 68.6 54 59.3
Aa31LG10G3250 Aethionema arabicum HOM05D003451 ORTHO05D003918 3.7e-10 68.2 51 62.7
BcaB07g33596 Brassica carinata HOM05D003451 ORTHO05D003918 3.7e-10 68.2 53 58.5
AT1G51510 Arabidopsis thaliana HOM05D003451 ORTHO05D003918 4.8e-10 67.8 60 55.0
Carub.0001s4036 Capsella rubella HOM05D003451 ORTHO05D003918 4.8e-10 67.8 51 60.8
FAN25G3146 Fragaria x ananassa HOM05D003451 ORTHO05D003918 4.8e-10 67.8 54 55.6
Zm00001eb109210 Zea mays HOM05D003451 ORTHO05D003918 4.8e-10 67.8 51 56.9
Zm00001eb207160 Zea mays HOM05D003451 ORTHO05D003918 4.8e-10 67.8 51 56.9
ATR0021G055 Amborella trichopoda HOM05D003451 ORTHO05D003918 6.3e-10 67.4 52 61.5
Potri.009G051000 Populus trichocarpa HOM05D003451 ORTHO05D003918 6.3e-10 67.4 53 60.4
BcaC01g01279 Brassica carinata HOM05D003451 ORTHO05D003918 8.2e-10 67.0 54 57.4
A08p02680 Brassica napus HOM05D003451 ORTHO05D003918 8.2e-10 67.0 54 57.4
C03p90160 Brassica napus HOM05D003451 ORTHO05D003918 8.2e-10 67.0 54 57.4
BolC3t21338H Brassica oleracea HOM05D003451 ORTHO05D003918 8.2e-10 67.0 54 57.4
BraA08t32308Z Brassica rapa HOM05D003451 ORTHO05D003918 8.2e-10 67.0 54 57.4
Thhalv10011787m.g Eutrema salsugineum HOM05D003451 ORTHO05D003918 8.2e-10 67.0 51 60.8
FvH4_3g28440 Fragaria vesca HOM05D003451 ORTHO05D003918 1.1e-09 66.6 43 65.1
FAN11G2798 Fragaria x ananassa HOM05D003451 ORTHO05D003918 1.1e-09 66.6 43 65.1
FAN16G1931 Fragaria x ananassa HOM05D003451 ORTHO05D003918 1.1e-09 66.6 43 65.1
FAN21G2060 Fragaria x ananassa HOM05D003451 ORTHO05D003918 1.1e-09 66.6 43 65.1
Phvul.002G034400 Phaseolus vulgaris HOM05D003451 ORTHO05D003918 1.1e-09 66.6 51 60.8
Sp1g38150 Schrenkiella parvula HOM05D003451 ORTHO05D003918 1.1e-09 66.6 53 56.6
BcaC08g43919 Brassica carinata HOM05D003451 ORTHO05D003918 1.4e-09 66.2 53 54.7
C06p13130 Brassica napus HOM05D003451 ORTHO05D003918 1.4e-09 66.2 53 54.7
BolC6t36469H Brassica oleracea HOM05D003451 ORTHO05D003918 1.4e-09 66.2 53 54.7
Glyma.01G227300 Glycine max HOM05D003451 ORTHO05D003918 1.4e-09 66.2 51 60.8
Glyma.11G015500 Glycine max HOM05D003451 ORTHO05D003918 1.4e-09 66.2 51 60.8
A05p19520 Brassica napus HOM05D003451 ORTHO05D003918 1.8e-09 65.9 53 54.7
VMungo1215G1947 Vigna mungo HOM05D003451 ORTHO05D003918 1.8e-09 65.9 60 55.0
arahy.Tifrunner.gnm1.ann1.KKL1UE Arachis hypogaea HOM05D003451 ORTHO05D003918 2.4e-09 65.5 51 60.8
arahy.Tifrunner.gnm1.ann1.ZE8HJS Arachis hypogaea HOM05D003451 ORTHO05D003918 2.4e-09 65.5 51 60.8
BcaB02g11254 Brassica carinata HOM05D003451 ORTHO05D003918 2.4e-09 65.5 53 54.7
Lalb_Chr09g0320421 Lupinus albus HOM05D003451 ORTHO05D003918 2.4e-09 65.5 51 60.8
Zm00001eb267400 Zea mays HOM05D001283 ORTHO05D001109 2.4e-09 65.5 47 61.7
CBR_g6624 Chara braunii HOM05D003451 ORTHO05D003918 3.1e-09 65.1 54 53.7
Ca_24487_v3 Cicer arietinum L. HOM05D003451 ORTHO05D003918 3.1e-09 65.1 51 58.8
Lalb_Chr16g0376831 Lupinus albus HOM05D003451 ORTHO05D003918 3.1e-09 65.1 53 56.6
Psat2g186200 Pisum sativum HOM05D003451 ORTHO05D003918 3.1e-09 65.1 51 58.8
SMO144G0212 Selaginella moellendorffii HOM05D003451 ORTHO05D003918 3.1e-09 65.1 49 59.2
TPR.G37988 Trifolium pratense HOM05D003451 ORTHO05D003918 3.1e-09 65.1 51 58.8
BraA05t20856Z Brassica rapa HOM05D003451 ORTHO05D003918 4.1e-09 64.7 53 52.8
Cre12.g526750 Chlamydomonas reinhardtii HOM05D003451 ORTHO05D003918 4.1e-09 64.7 40 70.0
Potri.006G048300 Populus trichocarpa HOM05D003451 ORTHO05D003918 4.1e-09 64.7 60 55.0
LjContig00222g0014229 Lotus japonicus HOM05D003451 ORTHO05D003918 5.3e-09 64.3 51 58.8
Sabra06G0033600 Salix brachista HOM05D003451 ORTHO05D003918 5.3e-09 64.3 60 55.0
Sabra16G0156600 Salix brachista HOM05D003451 ORTHO05D003918 5.3e-09 64.3 56 55.4
SGA_v2.0_scaffold42G16078 Striga asiatica HOM05D003451 ORTHO05D003918 5.3e-09 64.3 40 72.5
Prupe.4G255000 Prunus persica HOM05D003451 ORTHO05D003918 1.5e-08 62.8 43 65.1
QL07p002699 Quercus lobata HOM05D003451 ORTHO05D003918 1.5e-08 62.8 49 57.1
AagrBONN_evm.TU.Sc2ySwM_344.5320 Anthoceros agrestis HOM05D003451 ORTHO05D003918 3.4e-08 61.6 51 52.9
MD03G1171900 Malus domestica HOM05D003451 ORTHO05D003918 3.4e-08 61.6 43 60.5
MD11G1189700 Malus domestica HOM05D003451 ORTHO05D003918 3.4e-08 61.6 43 60.5
Potri.001G255600 Populus trichocarpa HOM05D003451 ORTHO05D003918 3.4e-08 61.6 54 51.9
Medtr5g008890 Medicago truncatula HOM05D003451 ORTHO05D003918 4.5e-08 61.2 42 64.3
MD12G1080200 Malus domestica HOM05D003451 ORTHO05D003918 2.9e-07 58.5 62 46.8
Pp3c20_17650 Physcomitrium patens HOM05D003451 ORTHO05D003918 3.8e-07 58.2 46 58.7
COL.COLO4_05419 Corchorus olitorius HOM05D003451 ORTHO05D003918 1.1e-06 56.6 42 57.1
Medtr3g054060 Medicago truncatula HOM05D003451 ORTHO05D003918 2.5e-06 55.5 46 58.7


User provided reference genes

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