Gene: SEGI_06162

General Information

Structural Information

Species Sequoiadendron giganteum
Gene Identifier SEGI_06162
Transcript Identifier SEGI_06162.1
Gene Type Coding gene
Location chr4 : 534991228-534998913 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D003451
#Genes/#Species 198/97
Phylogenetic origin

ID ORTHO05D003918
#Genes/#Species 199/97
Phylogenetic origin

Gene Duplication Information

Tandem Duplication Tandem duplicate

Labels

Identifiers

tid SEGI_06162.1

Descriptions

Ortholog descriptions

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006396	IEA	InterPro	RNA processing
GO:0010628	ISO	PLAZA Integrative Orthology	positive regulation of gene expression	AT1G51510

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003723	IEA	InterPro	RNA binding
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0005515	ISO	PLAZA Integrative Orthology	protein binding	AT1G51510
GO:0003729	ISO	PLAZA Integrative Orthology	mRNA binding	AT1G51510

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	IEA	InterPro	nucleus
GO:0005737	IEA	InterPro	cytoplasm
GO:0035145	ISO	PLAZA Integrative Orthology	exon-exon junction complex	AT1G51510
GO:0016604	ISO	PLAZA Integrative Orthology	nuclear body	AT1G51510
GO:0005730	ISO	PLAZA Integrative Orthology	nucleolus	AT1G51510
GO:0005654	ISO	PLAZA Integrative Orthology	nucleoplasm	AT1G51510

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR008111	RNA-binding motif protein 8
IPR000504	RNA recognition motif domain
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
IPR035979	RNA-binding domain superfamily

Mapman id	Description
35.2	not assigned.not annotate