Gene: Cre12.g526750

General Information

Structural Information

  • Species Chlamydomonas reinhardtii
  • Gene Identifier Cre12.g526750
  • Transcript Identifier Cre12.g526750.t1.2
  • Gene Type Coding gene
  • Location chromosome_12 : 5097131-5097959 : positive

Gene Family Information

  • ID HOM05D003451
  • #Genes/#Species 198/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Cre12.g526750.v5.5
  • pacid 30792129
  • alias g12979.t1

Descriptions

  • Description RNA binding motif protein
  • Description Sequence similarity to human RNA binding motif protein 8, RBM8A, predominantly nuclear though present in cytoplasm. Preferentially associated with mRNAs produced by splicing. Thought to remain associated with spliced mRNAs as a tag indicating where intron
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
InterProRNA processing
GO:0010628
ISO
PLAZA Integrative Orthologypositive regulation of gene expression AT1G51510

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
InterProRNA binding
GO:0003729
IEA
InterPromRNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G51510

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus
GO:0005737
IEA
InterProcytoplasm
GO:0035145
ISO
PLAZA Integrative Orthologyexon-exon junction complex AT1G51510
GO:0016604
ISO
PLAZA Integrative Orthologynuclear body AT1G51510
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G51510
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT1G51510

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR008111 RNA-binding motif protein 8
IPR035979 RNA-binding domain superfamily
IPR033744 RBM8, RNA recognition motif
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
17.3.1.1.3 Protein biosynthesis.mRNA quality control.Exon Junction complex (EJC).core components.component Y14