Gene: PGSC0003DMG400026119

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400026119
  • Transcript Identifier PGSC0003DMT400067187
  • Gene Type Coding gene
  • Location ST4.03ch06 : 46385953-46390326 : positive

Gene Family Information

  • ID HOM05D003451
  • #Genes/#Species 198/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37452702
  • id PGSC0003DMG400026119.v4.03
  • uniprot M1CGU5

Descriptions

  • Description Salt tolerance protein 4
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010628
ISO
PLAZA Integrative Orthologypositive regulation of gene expression AT1G51510
GO:0008380
IBA
GOA DatabaseRNA splicing
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G51510
GO:0003729
IBA
IEA
GOA DatabasemRNA binding
GO:0003729
IEA
InterPromRNA binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT1G51510
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G51510
GO:0016604
ISO
PLAZA Integrative Orthologynuclear body AT1G51510
GO:0035145
IBA
GOA Databaseexon-exon junction complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IEA
InterProcytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR000504 RNA recognition motif domain
IPR008111 RNA-binding motif protein 8
IPR033744 RBM8, RNA recognition motif
IPR035979 RNA-binding domain superfamily
Mapman id Description
17.3.1.1.3 Protein biosynthesis.mRNA quality control.Exon Junction complex (EJC).core components.component Y14