Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021251 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 1.4e-90 336.3 174 100.0
CSS0037562 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 1.6e-78 296.2 178 89.3
CSS0029706 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 4.1e-69 265.0 169 84.6
CSS0032982 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 1.8e-61 239.6 155 82.6
Eucgr.G00556 Eucalyptus grandis HOM05D000104 ORTHO05D003467 1.0e-56 223.8 155 73.5
vmacro11232 Vaccinium macrocarpon HOM05D000104 ORTHO05D003467 1.4e-56 223.4 155 74.8
GSVIVG01035901001 Vitis vinifera HOM05D000104 ORTHO05D003467 1.4e-56 223.4 155 71.0
CiPaw.08G007100 Carya illinoinensis HOM05D000104 ORTHO05D003467 1.8e-56 223.0 155 72.9
Cc08_g00060 Coffea canephora HOM05D000104 ORTHO05D003467 6.7e-56 221.1 155 74.8
Hma1.2p1_0392F.1_g143010 Hydrangea macrophylla HOM05D000104 ORTHO05D003467 3.3e-55 218.8 155 73.5
CSS0003293 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 7.4e-55 217.6 155 74.8
Manes.03G010400 Manihot esculenta HOM05D000104 ORTHO05D003467 1.3e-54 216.9 155 69.7
ClCG05G016460 Citrullus lanatus HOM05D000104 ORTHO05D003467 2.8e-54 215.7 155 70.3
Manes.16G127700 Manihot esculenta HOM05D000104 ORTHO05D003467 6.3e-54 214.5 156 70.5
Gohir.D07G035100 Gossypium hirsutum HOM05D000104 ORTHO05D003467 1.1e-53 213.8 155 69.7
Gorai.001G036900 Gossypium raimondii HOM05D000104 ORTHO05D003467 1.1e-53 213.8 155 69.7
Oeu056768.1 Olea europaea HOM05D000104 ORTHO05D003467 1.4e-53 213.4 153 69.3
PGR044G1954 Punica granatum HOM05D000104 ORTHO05D003467 1.4e-53 213.4 155 71.0
Haze_21436 Corylus avellana HOM05D000104 ORTHO05D003467 2.4e-53 212.6 155 69.7
Sed0013682 Sechium edule HOM05D000104 ORTHO05D003467 2.4e-53 212.6 155 71.0
Thecc.09G017400 Theobroma cacao HOM05D000104 ORTHO05D003467 2.4e-53 212.6 155 67.7
EL10Ac2g04134 Beta vulgaris HOM05D000104 ORTHO05D003467 4.1e-53 211.8 156 67.9
Ciclev10010331m.g Citrus clementina HOM05D000104 ORTHO05D003467 4.1e-53 211.8 155 69.7
Duzib150G0247 Durio zibethinus HOM05D000104 ORTHO05D003467 4.1e-53 211.8 155 67.7
Rhsim07G0163100 Rhododendron simsii HOM05D000104 ORTHO05D003467 4.1e-53 211.8 157 70.7
Dinv16472 Davidia involucrata HOM05D000104 ORTHO05D003467 6.9e-53 211.1 155 71.6
Oeu012636.1 Olea europaea HOM05D000104 ORTHO05D003467 6.9e-53 211.1 155 69.0
Rhsim02G0208200 Rhododendron simsii HOM05D000104 ORTHO05D003467 1.2e-52 210.3 170 67.6
Sc09g0010480 Simmondsia chinensis HOM05D000104 ORTHO05D003467 1.5e-52 209.9 155 67.7
Sabra18G0023400 Salix brachista HOM05D000104 ORTHO05D003467 2.0e-52 209.5 153 69.9
Potri.006G262200 Populus trichocarpa HOM05D000104 ORTHO05D003467 4.5e-52 208.4 159 69.2
TWI63G1656 Tripterygium wilfordii HOM05D000104 ORTHO05D003467 4.5e-52 208.4 155 68.4
Prupe.1G391600 Prunus persica HOM05D000104 ORTHO05D003467 1.0e-51 207.2 155 67.1
Ah.10g035570 Amaranthus hybridus HOM05D000104 ORTHO05D003467 1.3e-51 206.8 155 68.4
Oeu000758.1 Olea europaea HOM05D000104 ORTHO05D003467 1.3e-51 206.8 155 67.1
TWI32G0850 Tripterygium wilfordii HOM05D000104 ORTHO05D003467 1.7e-51 206.5 155 69.0
TAR625G0155 Trochodendron aralioides HOM05D000104 ORTHO05D003467 2.2e-51 206.1 155 68.4
Potri.018G021100 Populus trichocarpa HOM05D000104 ORTHO05D003467 2.9e-51 205.7 160 66.9
QL02p019684 Quercus lobata HOM05D000104 ORTHO05D003467 3.8e-51 205.3 155 69.0
Sabra06G0204500 Salix brachista HOM05D000104 ORTHO05D003467 6.5e-51 204.5 159 68.6
vmacro05141 Vaccinium macrocarpon HOM05D000104 ORTHO05D003467 6.5e-51 204.5 155 68.4
Nitab4.5_0002973g0030 Nicotiana tabacum HOM05D000104 ORTHO05D003467 1.4e-50 203.4 157 69.4
Sed0022321 Sechium edule HOM05D000104 ORTHO05D003467 1.4e-50 203.4 155 69.0
MELO3C016973.2 Cucumis melo HOM05D000104 ORTHO05D003467 1.9e-50 203.0 155 67.1
Hund03464 Selenicereus undatus HOM05D000104 ORTHO05D003467 1.9e-50 203.0 155 67.1
Nn2g12306 Nelumbo nucifera HOM05D000104 ORTHO05D003467 2.5e-50 202.6 155 67.7
MSTRG.11592 Avicennia marina HOM05D000104 ORTHO05D003467 3.2e-50 202.2 153 67.3
CsaV3_4G036700 Cucumis sativus L. HOM05D000104 ORTHO05D003467 3.2e-50 202.2 155 67.1
RcHm_v2.0_Chr6g0299661 Rosa chinensis HOM05D000104 ORTHO05D003467 7.2e-50 201.1 159 66.0
arahy.Tifrunner.gnm1.ann1.QU94QB Arachis hypogaea HOM05D000104 ORTHO05D003467 1.2e-49 200.3 155 67.1
COL.COLO4_18937 Corchorus olitorius HOM05D000104 ORTHO05D003467 1.6e-49 199.9 155 63.9
Cpa.g.sc127.15 Carica papaya HOM05D000104 ORTHO05D003467 2.7e-49 199.1 155 67.7
Migut.A00006 Erythranthe guttata HOM05D000104 ORTHO05D003467 2.7e-49 199.1 155 66.5
HanXRQChr11g0353801 Helianthus annuus HOM05D000104 ORTHO05D003467 3.6e-49 198.7 155 65.8
Lj7A730T43 Lonicera japonica HOM05D000104 ORTHO05D003467 3.6e-49 198.7 159 67.9
Nitab4.5_0000486g0110 Nicotiana tabacum HOM05D000104 ORTHO05D003467 4.7e-49 198.4 157 68.2
FvH4_2g40920 Fragaria vesca HOM05D005818 ORTHO05D003467 1.0e-48 197.2 159 66.0
FAN20G2022 Fragaria x ananassa HOM05D000104 ORTHO05D003467 3.0e-48 195.7 159 65.4
Nitab4.5_0002503g0110 Nicotiana tabacum HOM05D000104 ORTHO05D003467 3.0e-48 195.7 160 62.5
FAN27G0005 Fragaria x ananassa HOM05D000104 ORTHO05D003467 3.9e-48 195.3 159 65.4
Glyma.06G063400 Glycine max HOM05D000104 ORTHO05D003467 5.2e-48 194.9 155 63.9
Gohir.A13G179800 Gossypium hirsutum HOM05D000104 ORTHO05D003467 5.2e-48 194.9 155 66.5
MD08G1058800 Malus domestica HOM05D000104 ORTHO05D003467 6.7e-48 194.5 157 63.7
MD15G1037700 Malus domestica HOM05D000104 ORTHO05D003467 6.7e-48 194.5 157 65.0
Gohir.D13G187900 Gossypium hirsutum HOM05D000104 ORTHO05D003467 8.8e-48 194.1 155 66.5
Gorai.010G244100 Gossypium raimondii HOM05D000104 ORTHO05D003467 8.8e-48 194.1 155 66.5
AUR62031587 Chenopodium quinoa HOM05D000104 ORTHO05D003467 1.1e-47 193.7 154 64.3
Hund19597 Selenicereus undatus HOM05D000104 ORTHO05D003467 1.1e-47 193.7 157 63.1
THA.LOC104803635 Tarenaya hassleriana HOM05D000104 ORTHO05D003467 1.1e-47 193.7 155 63.9
AUR62012463 Chenopodium quinoa HOM05D000104 ORTHO05D003467 4.4e-47 191.8 154 63.6
Ca_15766_v3 Cicer arietinum L. HOM05D000104 ORTHO05D003467 4.4e-47 191.8 155 63.9
FAN15G1888 Fragaria x ananassa HOM05D000104 ORTHO05D003467 4.4e-47 191.8 156 65.4
Solyc06g065730.3 Solanum lycopersicum HOM05D000104 ORTHO05D003467 4.4e-47 191.8 155 63.2
Sopen06g024260 Solanum pennellii HOM05D000104 ORTHO05D003467 4.4e-47 191.8 155 63.2
Glyma.04G062400 Glycine max HOM05D000104 ORTHO05D003467 7.4e-47 191.0 155 63.2
HanXRQChr01g0030671 Helianthus annuus HOM05D000104 ORTHO05D003467 7.4e-47 191.0 155 65.8
TPR.G3131 Trifolium pratense HOM05D000104 ORTHO05D003467 1.3e-46 190.3 155 63.9
Lalb_Chr08g0244361 Lupinus albus HOM05D000104 ORTHO05D003467 2.2e-46 189.5 155 62.6
Actinidia22307 Actinidia chinensis HOM05D000104 ORTHO05D003467 3.7e-46 188.7 157 66.9
RcHm_v2.0_Chr3g0455421 Rosa chinensis HOM05D000104 ORTHO05D003467 4.8e-46 188.3 160 63.1
ECA248G2891 Erigeron canadensis HOM05D000104 ORTHO05D003467 1.4e-45 186.8 155 64.5
Ah.16g104930 Amaranthus hybridus HOM05D000104 ORTHO05D003467 2.4e-45 186.0 176 58.0
Medtr3g106210 Medicago truncatula HOM05D000104 ORTHO05D003467 3.1e-45 185.7 156 63.5
Phvul.009G088700 Phaseolus vulgaris HOM05D000104 ORTHO05D003467 4.1e-45 185.3 157 62.4
Lsat_1_v5_gn_1_42900 Lactuca sativa HOM05D000104 ORTHO05D003467 5.3e-45 184.9 155 65.2
CAN.G199.65 Capsicum annuum HOM05D000104 ORTHO05D003467 7.0e-45 184.5 155 62.6
SGA_v2.0_scaffold20G09081 Striga asiatica HOM05D000104 ORTHO05D003467 7.0e-45 184.5 153 62.7
Aqoxy2G02630 Aquilegia oxysepala HOM05D000104 ORTHO05D003467 2.0e-44 183.0 157 61.1
Peaxi162Scf00632g00012 Petunia axillaris HOM05D000104 ORTHO05D003467 2.0e-44 183.0 157 65.0
DCAR_003002 Daucus carota HOM05D000104 ORTHO05D003467 4.5e-44 181.8 160 62.5
Gohir.A07G031300 Gossypium hirsutum HOM05D000104 ORTHO05D003467 4.5e-44 181.8 155 63.2
Lalb_Chr23g0268291 Lupinus albus HOM05D000104 ORTHO05D003467 5.9e-44 181.4 155 59.4
Peaxi162Scf00430g00415 Petunia axillaris HOM05D000104 ORTHO05D003467 1.7e-43 179.9 141 64.5
THA.LOC104803854 Tarenaya hassleriana HOM05D000104 ORTHO05D003467 3.8e-43 178.7 155 60.6
Solyc08g029130.3 Solanum lycopersicum HOM05D000104 ORTHO05D003467 5.0e-43 178.3 155 63.2
Sopen08g010020 Solanum pennellii HOM05D000104 ORTHO05D003467 5.0e-43 178.3 155 63.2
AT2G25170 Arabidopsis thaliana HOM05D000104 ORTHO05D003467 1.1e-42 177.2 153 62.1
Aa31sc100G10 Aethionema arabicum HOM05D000104 ORTHO05D003467 1.5e-42 176.8 155 60.0
PSO384G0886 Papaver somniferum HOM05D000104 ORTHO05D003467 1.5e-42 176.8 156 60.9
PSO339G0671 Papaver somniferum HOM05D000104 ORTHO05D003467 2.5e-42 176.0 156 60.9
Carub.0004s0475 Capsella rubella HOM05D000104 ORTHO05D003467 4.2e-42 175.3 155 60.0
BcaC07g40886 Brassica carinata HOM05D000104 ORTHO05D003467 9.4e-42 174.1 155 62.6
C08p38830 Brassica napus HOM05D000104 ORTHO05D003467 9.4e-42 174.1 155 62.6
Lj1g0020904 Lotus japonicus HOM05D000104 ORTHO05D003467 9.4e-42 174.1 158 60.1
CARHR116490 Cardamine hirsuta HOM05D000104 ORTHO05D003467 1.2e-41 173.7 155 60.0
Psat5g031880 Pisum sativum HOM05D000104 ORTHO05D003467 2.1e-41 172.9 157 59.2
Atru.chr7.2524 Acer truncatum HOM05D000104 ORTHO05D003467 3.6e-41 172.2 157 61.1
AL4G16380 Arabidopsis lyrata HOM05D000104 ORTHO05D003467 4.7e-41 171.8 153 60.1
DCAR_007677 Daucus carota HOM05D000104 ORTHO05D003467 4.7e-41 171.8 154 62.3
BcaB08g35151 Brassica carinata HOM05D000104 ORTHO05D003467 1.0e-40 170.6 155 61.9
VMungo1309G2115 Vigna mungo HOM05D000104 ORTHO05D003467 1.0e-40 170.6 158 60.1
A09p55830 Brassica napus HOM05D000104 ORTHO05D003467 1.8e-40 169.9 155 61.3
Thhalv10000014m.g Eutrema salsugineum HOM05D000104 ORTHO05D003467 1.8e-40 169.9 155 61.3
Sp4g04150 Schrenkiella parvula HOM05D000104 ORTHO05D003467 2.3e-40 169.5 155 60.6
BolC8t51453H Brassica oleracea HOM05D000104 ORTHO05D003467 3.0e-40 169.1 157 61.8
BraA09t40986Z Brassica rapa HOM05D000104 ORTHO05D003467 7.5e-39 164.5 157 60.5
ATR1153G016 Amborella trichopoda HOM05D000104 ORTHO05D003467 1.7e-38 163.3 159 59.7
Lalb_Chr24g0402041 Lupinus albus HOM05D000104 ORTHO05D003467 1.7e-38 163.3 157 55.4
Lalb_Chr22g0361401 Lupinus albus HOM05D000104 ORTHO05D003467 3.1e-37 159.1 157 51.6
CDE06G2391 Ceratophyllum demersum HOM05D000104 ORTHO05D003467 2.7e-33 146.0 158 52.5
Psat6g027200 Pisum sativum HOM05D000104 ORTHO05D003467 3.0e-32 142.5 158 51.9
SEGI_33990 Sequoiadendron giganteum HOM05D000104 ORTHO05D003467 1.7e-30 136.7 165 50.3
Phvul.001G046100 Phaseolus vulgaris HOM05D000104 ORTHO05D003467 4.7e-25 118.6 159 43.4
Nitab4.5_0003811g0020 Nicotiana tabacum HOM05D000104 ORTHO05D003467 1.8e-24 116.7 90 64.4
HPP92_004609 Vanilla planifolia HOM05D000104 ORTHO05D003467 1.2e-23 114.0 137 49.6
Glyma.17G217300 Glycine max HOM05D000104 ORTHO05D003467 2.6e-23 112.8 155 44.5
AT4G31900 Arabidopsis thaliana HOM05D000104 ORTHO05D003467 5.7e-23 111.7 164 43.9
Medtr1g013190 Medicago truncatula HOM05D000104 ORTHO05D003467 9.2e-21 104.4 156 41.7
VMungo0647G2573 Vigna mungo HOM05D000104 ORTHO05D003467 9.2e-21 104.4 155 42.6
SMO200G0085 Selaginella moellendorffii HOM05D000104 ORTHO05D003467 2.3e-19 99.8 159 42.8
AL7G20000 Arabidopsis lyrata HOM05D000104 ORTHO05D003467 2.9e-19 99.4 168 40.5
Thhalv10027006m.g Eutrema salsugineum HOM05D000104 ORTHO05D003467 4.3e-18 95.5 185 35.1
Sp7g29720 Schrenkiella parvula HOM05D000104 ORTHO05D003467 1.2e-17 94.0 157 40.8
Carub.0007s0864 Capsella rubella HOM05D000104 ORTHO05D003467 2.3e-16 89.7 165 38.2
Ca_13055_v3 Cicer arietinum L. HOM05D000104 ORTHO05D003467 3.0e-16 89.4 114 44.7
SMO228G0183 Selaginella moellendorffii HOM05D000104 ORTHO05D003467 6.8e-16 88.2 156 39.1
THA.LOC104804837 Tarenaya hassleriana HOM05D000104 ORTHO05D003467 8.9e-16 87.8 90 54.4
AL7G19990 Arabidopsis lyrata HOM05D000104 ORTHO05D003467 1.2e-15 87.4 176 38.1
TPR.G38889 Trifolium pratense HOM05D000104 ORTHO05D003467 1.2e-15 87.4 157 40.1
Pp3c21_10800 Physcomitrium patens HOM05D000104 ORTHO05D003467 4.4e-15 85.5 169 35.5
Pp3c18_19040 Physcomitrium patens HOM05D000104 ORTHO05D003467 9.8e-15 84.3 169 34.9
Pp3c18_19045 Physcomitrium patens HOM05D000104 ORTHO05D003467 9.8e-15 84.3 169 34.9
Mapoly0010s0012 Marchantia polymorpha HOM05D000104 ORTHO05D003467 2.2e-14 83.2 160 37.5
RcHm_v2.0_Chr3g0495041 Rosa chinensis HOM05D000104 ORTHO05D003467 2.9e-14 82.8 68 63.2
A01p06320 Brassica napus HOM05D000104 ORTHO05D003467 1.1e-13 80.9 191 33.5
BraA01t00598Z Brassica rapa HOM05D000104 ORTHO05D003467 1.4e-13 80.5 201 32.8
BcaC09g51983 Brassica carinata HOM05D000104 ORTHO05D003467 2.4e-13 79.7 182 35.2
C01p06980 Brassica napus HOM05D000104 ORTHO05D003467 2.4e-13 79.7 203 32.5
BolC1t00694H Brassica oleracea HOM05D000104 ORTHO05D003467 7.8e-12 74.7 211 30.8
FAN26G0509 Fragaria x ananassa HOM05D006007 ORTHO05D003467 1.3e-11 73.9 70 54.3
vmacro05139 Vaccinium macrocarpon HOM05D000104 ORTHO05D003467 1.6e-09 67.0 57 54.4
A01p06340 Brassica napus HOM05D000104 ORTHO05D003467 2.1e-09 66.6 192 30.7
BraA01t00599Z Brassica rapa HOM05D000104 ORTHO05D003467 2.1e-09 66.6 192 30.7
C01p07000 Brassica napus HOM05D000104 ORTHO05D003467 1.8e-08 63.5 192 30.2
Os06g0183800 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D003467 5.2e-08 62.0 68 47.1
BcaC09g51981 Brassica carinata HOM05D000104 ORTHO05D003467 6.8e-08 61.6 199 29.1
BolC1t00695H Brassica oleracea HOM05D000104 ORTHO05D003467 8.9e-08 61.2 199 29.1
A03p61110 Brassica napus HOM05D000104 ORTHO05D003467 3.4e-07 59.3 111 33.3
HPP92_004615 Vanilla planifolia HOM05D000104 ORTHO05D003467 9.8e-07 57.8 146 34.2


User provided reference genes

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