Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021238 Camellia sinensis var. sinensis HOM05D000188 ORTHO05D003976 1.2e-109 399.8 203 100.0
CSS0044293 Camellia sinensis var. sinensis HOM05D000188 ORTHO05D003976 3.3e-86 322.0 166 99.4
CSS0035885 Camellia sinensis var. sinensis HOM05D000188 ORTHO05D003976 6.5e-34 148.3 126 69.0
Hund11293 Selenicereus undatus HOM05D000188 ORTHO05D003976 3.9e-23 112.5 149 51.0
Nitab4.5_0008709g0020 Nicotiana tabacum HOM05D000188 ORTHO05D003976 6.7e-23 111.7 159 48.4
Ah.12g053730 Amaranthus hybridus HOM05D000188 ORTHO05D003976 3.3e-22 109.4 173 45.1
TAR375G0650 Trochodendron aralioides HOM05D000188 ORTHO05D003976 4.3e-22 109.0 158 48.1
unitig_22.g5496 Utricularia gibba HOM05D000188 ORTHO05D003976 7.4e-22 108.2 160 47.5
Dinv25173 Davidia involucrata HOM05D000188 ORTHO05D003976 9.7e-22 107.8 181 44.2
Ah.07g199630 Amaranthus hybridus HOM05D000188 ORTHO05D003976 1.3e-21 107.5 173 45.1
ATR1136G154 Amborella trichopoda HOM05D000188 ORTHO05D003976 1.3e-21 107.5 173 45.7
Aqoxy3G02561 Aquilegia oxysepala HOM05D000188 ORTHO05D003976 1.3e-21 107.5 173 45.7
CSS0041371 Camellia sinensis var. sinensis HOM05D000188 ORTHO05D003976 1.3e-21 107.5 173 45.7
CSS0042114 Camellia sinensis var. sinensis HOM05D000188 ORTHO05D003976 1.3e-21 107.5 173 45.7
Cc08_g01700 Coffea canephora HOM05D000188 ORTHO05D003976 1.3e-21 107.5 173 45.7
Migut.E00804 Erythranthe guttata HOM05D000188 ORTHO05D003976 1.3e-21 107.5 173 45.7
Migut.E00902 Erythranthe guttata HOM05D000188 ORTHO05D003976 1.3e-21 107.5 173 45.7
Gohir.A08G160500 Gossypium hirsutum HOM05D000188 ORTHO05D003976 1.3e-21 107.5 173 45.7
Gohir.D08G180800 Gossypium hirsutum HOM05D000188 ORTHO05D003976 1.3e-21 107.5 173 45.7
Gorai.004G189700 Gossypium raimondii HOM05D000188 ORTHO05D003976 1.3e-21 107.5 173 45.7
Lj2C248G9 Lonicera japonica HOM05D000188 ORTHO05D003976 1.3e-21 107.5 173 45.7
MD04G1136100 Malus domestica HOM05D000188 ORTHO05D003976 1.3e-21 107.5 173 45.1
Nn1g00669 Nelumbo nucifera HOM05D000188 ORTHO05D003976 1.3e-21 107.5 173 45.7
Nn6g33690 Nelumbo nucifera HOM05D000188 ORTHO05D003976 1.3e-21 107.5 173 45.7
GSVIVG01013247001 Vitis vinifera HOM05D000188 ORTHO05D003976 1.3e-21 107.5 173 45.7
AT5G47010 Arabidopsis thaliana HOM05D000188 ORTHO05D003976 1.6e-21 107.1 173 45.7
vmacro14146 Vaccinium macrocarpon HOM05D000188 ORTHO05D003976 1.6e-21 107.1 173 45.7
Actinidia31478 Actinidia chinensis HOM05D000188 ORTHO05D003976 2.2e-21 106.7 173 45.7
Aa31LG9G5970 Aethionema arabicum HOM05D000188 ORTHO05D003976 2.2e-21 106.7 173 45.7
AL8G11270 Arabidopsis lyrata HOM05D000188 ORTHO05D003976 2.2e-21 106.7 173 45.7
CARHR174460 Cardamine hirsuta HOM05D000188 ORTHO05D003976 2.2e-21 106.7 173 45.7
CDE12G0177 Ceratophyllum demersum HOM05D000188 ORTHO05D003976 2.2e-21 106.7 173 45.7
MBI04_g03344_MAGBIO Magnolia biondii HOM05D000188 ORTHO05D003976 2.2e-21 106.7 173 45.7
Os07g0495900 Oryza sativa ssp. japonica HOM05D000188 ORTHO05D003976 2.2e-21 106.7 173 45.7
Sp2g11810 Schrenkiella parvula HOM05D000188 ORTHO05D003976 2.2e-21 106.7 173 45.7
HPP92_014871 Vanilla planifolia HOM05D000188 ORTHO05D003976 2.2e-21 106.7 173 45.7
Lalb_Chr09g0323981 Lupinus albus HOM05D000188 ORTHO05D003976 2.8e-21 106.3 173 45.1
MD06G1042600 Malus domestica HOM05D000188 ORTHO05D003976 2.8e-21 106.3 173 44.5
MD16G1268400 Malus domestica HOM05D000188 ORTHO05D003976 2.8e-21 106.3 173 45.1
PSO063G6653 Papaver somniferum HOM05D000188 ORTHO05D003976 2.8e-21 106.3 173 45.1
PSO782G3028 Papaver somniferum HOM05D000188 ORTHO05D003976 2.8e-21 106.3 173 45.1
SGA_v2.0_scaffold20G09241 Striga asiatica HOM05D000188 ORTHO05D003976 2.8e-21 106.3 173 45.1
SGA_v2.0_scaffold6G03173 Striga asiatica HOM05D000188 ORTHO05D003976 2.8e-21 106.3 173 45.1
TAR629G0968 Trochodendron aralioides HOM05D000188 ORTHO05D003976 2.8e-21 106.3 173 45.1
Zm00001eb105540 Zea mays HOM05D000188 ORTHO05D003976 2.8e-21 106.3 173 45.7
Atru.chr6.1792 Acer truncatum HOM05D000188 ORTHO05D003976 3.7e-21 105.9 173 45.1
EL10Ac5g12207 Beta vulgaris HOM05D000188 ORTHO05D003976 3.7e-21 105.9 173 45.1
AUR62007211 Chenopodium quinoa HOM05D000188 ORTHO05D003976 3.7e-21 105.9 173 45.1
AUR62018790 Chenopodium quinoa HOM05D000188 ORTHO05D003976 3.7e-21 105.9 173 45.1
Ciclev10033615m.g Citrus clementina HOM05D000188 ORTHO05D003976 3.7e-21 105.9 173 45.1
COL.COLO4_17123 Corchorus olitorius HOM05D000188 ORTHO05D003976 3.7e-21 105.9 173 45.1
DCAR_008305 Daucus carota HOM05D000188 ORTHO05D003976 3.7e-21 105.9 173 45.1
Duzib068G0921 Durio zibethinus HOM05D000188 ORTHO05D003976 3.7e-21 105.9 173 45.1
Eucgr.E00323 Eucalyptus grandis HOM05D000188 ORTHO05D003976 3.7e-21 105.9 173 45.1
FvH4_5g20920 Fragaria vesca HOM05D000188 ORTHO05D003976 3.7e-21 105.9 173 45.1
FAN04G1896 Fragaria x ananassa HOM05D000188 ORTHO05D003976 3.7e-21 105.9 173 45.1
FAN08G2510 Fragaria x ananassa HOM05D000188 ORTHO05D003976 3.7e-21 105.9 173 45.1
FAN13G2517 Fragaria x ananassa HOM05D000188 ORTHO05D003976 3.7e-21 105.9 173 45.1
FAN18G0956 Fragaria x ananassa HOM05D000188 ORTHO05D003976 3.7e-21 105.9 173 45.1
Gohir.A03G003000 Gossypium hirsutum HOM05D000188 ORTHO05D003976 3.7e-21 105.9 173 45.1
Gohir.D03G169400 Gossypium hirsutum HOM05D000188 ORTHO05D003976 3.7e-21 105.9 173 45.1
Gorai.003G179500 Gossypium raimondii HOM05D000188 ORTHO05D003976 3.7e-21 105.9 173 45.1
Lalb_Chr16g0379271 Lupinus albus HOM05D000188 ORTHO05D003976 3.7e-21 105.9 168 45.2
Manes.17G021900 Manihot esculenta HOM05D000188 ORTHO05D003976 3.7e-21 105.9 173 45.1
Nitab4.5_0005487g0030 Nicotiana tabacum HOM05D000188 ORTHO05D003976 3.7e-21 105.9 173 45.1
Peaxi162Scf00102g00730 Petunia axillaris HOM05D000188 ORTHO05D003976 3.7e-21 105.9 173 45.1
Potri.001G148100 Populus trichocarpa HOM05D000188 ORTHO05D003976 3.7e-21 105.9 173 45.1
Prupe.5G049500 Prunus persica HOM05D000188 ORTHO05D003976 3.7e-21 105.9 173 45.1
PGR042G0017 Punica granatum HOM05D000188 ORTHO05D003976 3.7e-21 105.9 173 45.1
QL12p007494 Quercus lobata HOM05D000188 ORTHO05D003976 3.7e-21 105.9 173 45.1
RcHm_v2.0_Chr7g0207971 Rosa chinensis HOM05D000188 ORTHO05D003976 3.7e-21 105.9 173 45.1
Hund14450 Selenicereus undatus HOM05D000188 ORTHO05D003976 3.7e-21 105.9 173 45.1
Solyc08g007110.4 Solanum lycopersicum HOM05D000188 ORTHO05D003976 3.7e-21 105.9 173 45.1
Sopen08g003060 Solanum pennellii HOM05D000188 ORTHO05D003976 3.7e-21 105.9 173 45.1
Thecc.03G235600 Theobroma cacao HOM05D000188 ORTHO05D003976 3.7e-21 105.9 173 45.1
CAN.G845.27 Capsicum annuum HOM05D000188 ORTHO05D003976 4.8e-21 105.5 173 45.1
Cfa012367 Carpinus fangiana HOM05D000188 ORTHO05D003976 4.8e-21 105.5 173 45.1
CiPaw.11G086500 Carya illinoinensis HOM05D000188 ORTHO05D003976 4.8e-21 105.5 173 45.1
ClCG10G001940 Citrullus lanatus HOM05D000188 ORTHO05D003976 4.8e-21 105.5 173 45.1
MELO3C013879.2 Cucumis melo HOM05D000188 ORTHO05D003976 4.8e-21 105.5 173 45.1
CsaV3_3G002080 Cucumis sativus L. HOM05D000188 ORTHO05D003976 4.8e-21 105.5 173 45.1
Duzib205G1433 Durio zibethinus HOM05D000188 ORTHO05D003976 4.8e-21 105.5 173 45.1
Thhalv10000743m.g Eutrema salsugineum HOM05D000188 ORTHO05D003976 4.8e-21 105.5 173 45.1
Sed0018558 Sechium edule HOM05D000188 ORTHO05D003976 4.8e-21 105.5 173 45.1
TWI15G0852 Tripterygium wilfordii HOM05D000188 ORTHO05D003976 4.8e-21 105.5 173 45.1
TWI60G1508 Tripterygium wilfordii HOM05D000188 ORTHO05D003976 4.8e-21 105.5 173 45.1
HPP92_014919 Vanilla planifolia HOM05D000188 ORTHO05D003976 4.8e-21 105.5 168 45.8
Zm00001eb322020 Zea mays HOM05D000188 ORTHO05D003976 4.8e-21 105.5 167 46.1
arahy.Tifrunner.gnm1.ann1.FN6SHM Arachis hypogaea HOM05D000188 ORTHO05D003976 6.3e-21 105.1 173 44.5
arahy.Tifrunner.gnm1.ann1.L380RS Arachis hypogaea HOM05D000188 ORTHO05D003976 6.3e-21 105.1 173 44.5
A02p30660 Brassica napus HOM05D000188 ORTHO05D003976 6.3e-21 105.1 173 45.1
C02p48200 Brassica napus HOM05D000188 ORTHO05D003976 6.3e-21 105.1 173 45.1
BolC2t10853H Brassica oleracea HOM05D000188 ORTHO05D003976 6.3e-21 105.1 173 45.1
BraA02t08082Z Brassica rapa HOM05D000188 ORTHO05D003976 6.3e-21 105.1 173 45.1
CiPaw.12G059100 Carya illinoinensis HOM05D000188 ORTHO05D003976 6.3e-21 105.1 173 45.1
CDE06G0953 Ceratophyllum demersum HOM05D000188 ORTHO05D003976 6.3e-21 105.1 177 44.6
Ca_24627_v3 Cicer arietinum L. HOM05D000188 ORTHO05D003976 6.3e-21 105.1 173 44.5
Glyma.01G202600 Glycine max HOM05D000188 ORTHO05D003976 6.3e-21 105.1 173 44.5
Glyma.11G040200 Glycine max HOM05D000188 ORTHO05D003976 6.3e-21 105.1 173 44.5
Medtr5g013820 Medicago truncatula HOM05D000188 ORTHO05D003976 6.3e-21 105.1 173 44.5
Phvul.002G003300 Phaseolus vulgaris HOM05D000188 ORTHO05D003976 6.3e-21 105.1 173 44.5
Psat2g175000 Pisum sativum HOM05D000188 ORTHO05D003976 6.3e-21 105.1 173 44.5
Sc01g0007820 Simmondsia chinensis HOM05D000188 ORTHO05D003976 6.3e-21 105.1 173 45.1
TPR.G22716 Trifolium pratense HOM05D000188 ORTHO05D003976 6.3e-21 105.1 173 44.5
VMungo1215G0424 Vigna mungo HOM05D000188 ORTHO05D003976 6.3e-21 105.1 173 44.5
CANSAT21G0831 Cannabis sativa HOM05D000188 ORTHO05D003976 8.2e-21 104.8 173 44.5
Dinv28904 Davidia involucrata HOM05D000188 ORTHO05D003976 8.2e-21 104.8 173 44.5
ECA233G4074 Erigeron canadensis HOM05D000188 ORTHO05D003976 8.2e-21 104.8 173 44.5
Lsat_1_v5_gn_6_68181 Lactuca sativa HOM05D000188 ORTHO05D003976 8.2e-21 104.8 173 44.5
Lsat_1_v5_gn_6_89421 Lactuca sativa HOM05D000188 ORTHO05D003976 8.2e-21 104.8 173 44.5
Lj8C288T9 Lonicera japonica HOM05D000188 ORTHO05D003976 8.2e-21 104.8 173 44.5
Oeu053049.1 Olea europaea HOM05D000188 ORTHO05D003976 8.2e-21 104.8 173 44.5
PGSC0003DMG400001863 Solanum tuberosum HOM05D000188 ORTHO05D003976 8.2e-21 104.8 173 44.5
vmacro00364 Vaccinium macrocarpon HOM05D000188 ORTHO05D003976 8.2e-21 104.8 173 44.5
Lj2g0002868 Lotus japonicus HOM05D000188 ORTHO05D003976 1.1e-20 104.4 173 44.5
Pp3c20_16510 Physcomitrium patens HOM05D000188 ORTHO05D003976 1.1e-20 104.4 173 44.5
THA.LOC104806689 Tarenaya hassleriana HOM05D000188 ORTHO05D003976 1.1e-20 104.4 173 44.5
TWI81G0847 Tripterygium wilfordii HOM05D000188 ORTHO05D003976 1.1e-20 104.4 173 44.5
AagrBONN_evm.TU.Sc2ySwM_117.2896 Anthoceros agrestis HOM05D000188 ORTHO05D003976 1.4e-20 104.0 173 44.5
Carub.0008s0082 Capsella rubella HOM05D000188 ORTHO05D003976 1.4e-20 104.0 173 45.1
CAN.G572.54 Capsicum annuum HOM05D000188 ORTHO05D003976 1.4e-20 104.0 173 44.5
HanXRQChr03g0086991 Helianthus annuus HOM05D000188 ORTHO05D003976 1.4e-20 104.0 173 43.9
Peaxi162Scf00084g00613 Petunia axillaris HOM05D000188 ORTHO05D003976 1.4e-20 104.0 173 44.5
Pp3c23_9370 Physcomitrium patens HOM05D000188 ORTHO05D003976 1.4e-20 104.0 173 44.5
SEGI_12247 Sequoiadendron giganteum HOM05D000188 ORTHO05D003976 1.4e-20 104.0 173 44.5
Solyc08g077420.3 Solanum lycopersicum HOM05D000188 ORTHO05D003976 1.4e-20 104.0 173 44.5
Sopen08g026010 Solanum pennellii HOM05D000188 ORTHO05D003976 1.4e-20 104.0 173 44.5
Gohir.D09G192400 Gossypium hirsutum HOM05D000188 ORTHO05D003976 1.8e-20 103.6 173 45.1
Gorai.006G215300 Gossypium raimondii HOM05D000188 ORTHO05D003976 1.8e-20 103.6 173 45.1
Lalb_Chr05g0214101 Lupinus albus HOM05D000188 ORTHO05D003976 1.8e-20 103.6 173 44.5
Potri.003G086400 Populus trichocarpa HOM05D000188 ORTHO05D003976 1.8e-20 103.6 173 45.1
Sabra03G0056200 Salix brachista HOM05D000188 ORTHO05D003976 1.8e-20 103.6 168 45.8
Cpa.g.sc29.2 Carica papaya HOM05D000188 ORTHO05D003976 2.4e-20 103.2 173 44.5
Gohir.A09G197800 Gossypium hirsutum HOM05D000188 ORTHO05D003976 4.1e-20 102.4 173 44.5
Nitab4.5_0004832g0040 Nicotiana tabacum HOM05D000188 ORTHO05D003976 9.0e-20 101.3 173 43.9
BcaB07g30801 Brassica carinata HOM05D000188 ORTHO05D003976 1.2e-19 100.9 143 51.7
Mapoly0029s0126 Marchantia polymorpha HOM05D000188 ORTHO05D003976 1.2e-19 100.9 173 43.9
CBR_g39626 Chara braunii HOM05D000188 ORTHO05D003976 1.7e-18 97.1 173 42.2
CBR_g8052 Chara braunii HOM05D000188 ORTHO05D003976 1.7e-18 97.1 173 42.2
Nitab4.5_0001444g0010 Nicotiana tabacum HOM05D000188 ORTHO05D003976 2.2e-18 96.7 170 42.9
PRCOL_00001514 Prasinoderma coloniale HOM05D000188 ORTHO05D003976 2.9e-18 96.3 171 40.4
BcaC03g16918 Brassica carinata HOM05D000188 ORTHO05D003976 3.8e-18 95.9 169 43.2
Rhsim07G0121100 Rhododendron simsii HOM05D000188 ORTHO05D003976 8.5e-18 94.7 216 39.8
Actinidia10875 Actinidia chinensis HOM05D000188 ORTHO05D003976 5.5e-17 92.0 51 88.2
Haze_08316 Corylus avellana HOM05D000188 ORTHO05D003976 5.5e-17 92.0 224 35.7
DCAR_005597 Daucus carota HOM05D000188 ORTHO05D003976 5.5e-17 92.0 51 88.2
Oeu039350.3 Olea europaea HOM05D000188 ORTHO05D003976 5.5e-17 92.0 51 88.2
Oeu019051.3 Olea europaea HOM05D000188 ORTHO05D003976 9.4e-17 91.3 49 91.8
Rhsim11G0009100 Rhododendron simsii HOM05D000188 ORTHO05D003976 1.2e-16 90.9 51 86.3
SEGI_28600 Sequoiadendron giganteum HOM05D000188 ORTHO05D003976 1.2e-16 90.9 51 86.3
MCO10G305 Micromonas commoda HOM05D000188 ORTHO05D003976 1.6e-16 90.5 167 40.1
Cre02.g092500 Chlamydomonas reinhardtii HOM05D000188 ORTHO05D003976 3.0e-15 86.3 173 39.9
Psat4g136640 Pisum sativum HOM05D000188 ORTHO05D003976 3.0e-15 86.3 51 80.4
Haze_26602 Corylus avellana HOM05D000188 ORTHO05D003976 8.8e-15 84.7 186 36.6
C09p29220 Brassica napus HOM05D000188 ORTHO05D003976 1.1e-14 84.3 51 82.4
Psat4g095800 Pisum sativum HOM05D000188 ORTHO05D003976 3.7e-13 79.3 50 76.0
Cfa026616 Carpinus fangiana HOM05D000188 ORTHO05D003976 8.2e-13 78.2 51 72.5
Sabra01G0116400 Salix brachista HOM05D000188 ORTHO05D003976 1.5e-11 73.9 173 38.7
Sabra01G0117900 Salix brachista HOM05D000188 ORTHO05D003976 1.5e-11 73.9 173 38.7
Psat0s4928g0040 Pisum sativum HOM05D000188 ORTHO05D003976 2.0e-11 73.6 41 82.9
Psat4g136680 Pisum sativum HOM05D000188 ORTHO05D003976 1.4e-07 60.8 35 82.9


User provided reference genes

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