Gene: C09p29220
General Information
Structural Information
- Species Brassica napus
- Gene Identifier C09p29220
- Transcript Identifier C09p29220
- Gene Type Coding gene
- Location C09 : 23107733-23117197 : positive
Gene Family Information
- ID HOM05D000188
- #Genes/#Species 2040/99
- Phylogenetic origin
- ID ORTHO05D003976
- #Genes/#Species 196/97
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid C09p29220.1_BnaDAR
- v5 BnaC09g19900D
- single_cell_id C09p29220.1-BnaDAR
- ensembl GSBRNA2T00115613001
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000184 | IEA | InterPro | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0003724 | IEA | InterPro | RNA helicase activity | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0004386 | IEA | InterPro | helicase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | IEA | InterPro | cytoplasm |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR018999 | RNA helicase UPF1, Cys/His rich zinc-binding domain |
| IPR040812 | RNA helicase UPF1, 1B domain |
| IPR041679 | DNA2/NAM7 helicase-like, C-terminal |
| IPR045055 | DNA2/NAM7-like helicase |
| IPR041677 | DNA2/NAM7 helicase, helicase domain |
| Mapman id | Description |
|---|---|
| 17.3.2.3 | Protein biosynthesis.mRNA quality control.NMD Nonsense-Mediated Decay.effector protein (UPF1) |