Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 0.0e+00 2127.4 1198 100.0
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 0.0e+00 1893.6 1198 86.9
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1886.3 1198 88.7
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 0.0e+00 1815.4 1218 82.6
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 0.0e+00 1791.5 1197 80.7
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 0.0e+00 1788.1 1198 83.1
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 0.0e+00 1787.3 1124 84.7
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 0.0e+00 1768.1 1198 79.9
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 0.0e+00 1764.6 1204 79.4
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 0.0e+00 1755.3 1123 85.4
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 0.0e+00 1750.7 1200 78.8
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 0.0e+00 1750.3 1197 79.3
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 0.0e+00 1744.2 1200 81.5
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 0.0e+00 1742.2 1207 79.0
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 0.0e+00 1736.1 1209 76.8
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1735.7 1199 80.7
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1730.7 1200 77.6
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 0.0e+00 1729.9 1211 76.9
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 0.0e+00 1723.8 1199 78.3
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1721.1 1201 78.4
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 0.0e+00 1720.7 1172 78.9
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 0.0e+00 1718.4 1201 78.8
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 0.0e+00 1717.6 1206 78.1
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1716.8 1201 78.4
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 0.0e+00 1713.0 1202 76.5
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1711.4 1201 78.4
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1710.3 1197 78.4
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 0.0e+00 1709.1 1204 76.8
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 0.0e+00 1705.6 1203 76.6
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 0.0e+00 1704.5 1203 78.8
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1703.7 1172 79.1
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 0.0e+00 1700.3 1262 75.4
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1693.3 1198 75.4
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 0.0e+00 1690.2 1204 79.3
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 0.0e+00 1687.5 1201 77.4
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 0.0e+00 1685.6 1228 76.6
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1681.0 1201 78.9
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1681.0 1199 75.9
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 0.0e+00 1681.0 1197 76.2
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1679.5 1178 77.9
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 0.0e+00 1677.9 1201 76.1
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1677.5 1200 76.8
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 0.0e+00 1676.4 1207 76.7
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 0.0e+00 1674.8 1200 75.7
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1673.7 1205 76.3
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 0.0e+00 1669.1 1172 77.3
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1666.7 1178 76.9
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 0.0e+00 1666.7 1215 76.2
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1666.4 1207 74.4
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 0.0e+00 1663.7 1198 77.3
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 0.0e+00 1662.9 1200 74.3
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1659.0 1202 74.1
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 0.0e+00 1656.7 1173 76.9
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 0.0e+00 1654.0 1206 75.8
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 0.0e+00 1654.0 1203 74.4
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 0.0e+00 1653.6 1169 77.1
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1649.0 1205 75.9
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1639.8 1225 74.6
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 0.0e+00 1629.8 1189 77.7
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1627.1 1179 75.6
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 0.0e+00 1624.0 1171 75.8
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1621.3 1175 74.8
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 0.0e+00 1616.3 1221 72.3
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1610.9 1192 73.9
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 0.0e+00 1609.3 1396 68.3
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 0.0e+00 1601.6 1170 75.7
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1596.6 1154 75.0
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 0.0e+00 1590.9 1206 70.7
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 0.0e+00 1588.9 1175 71.7
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1573.5 1182 73.1
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1571.2 1119 75.4
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 0.0e+00 1566.6 1194 72.6
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1558.5 1231 70.1
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1557.3 1277 70.3
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1552.7 1204 72.0
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1552.3 1065 79.5
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 0.0e+00 1542.7 1200 68.9
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1536.2 1200 68.8
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1536.2 1200 68.8
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 0.0e+00 1533.9 1201 70.4
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 0.0e+00 1532.3 1172 71.8
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 0.0e+00 1522.7 1197 72.5
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 0.0e+00 1521.5 1200 71.4
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1521.1 1200 68.4
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 0.0e+00 1517.3 1152 72.1
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 0.0e+00 1516.5 1200 69.1
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1502.6 1201 71.2
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1498.8 1205 68.8
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1495.3 1208 68.7
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 0.0e+00 1491.9 1212 68.4
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1489.9 1210 68.3
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1489.2 1167 69.2
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 0.0e+00 1487.6 1216 67.9
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1471.1 1213 67.8
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1461.8 1261 66.4
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 0.0e+00 1458.0 1166 71.8
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1439.1 1179 67.2
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 0.0e+00 1437.2 930 82.7
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 0.0e+00 1417.5 895 81.1
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 0.0e+00 1411.7 872 84.5
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 0.0e+00 1397.1 1185 66.0
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 0.0e+00 1382.5 1197 66.1
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 0.0e+00 1359.0 1172 65.3
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1236.5 814 81.6
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 0.0e+00 1232.6 839 77.1
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 0.0e+00 1191.4 760 82.9
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1183.7 887 78.6
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 0.0e+00 1159.1 1206 56.7
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1094.3 797 72.0
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 6.0e-297 1024.6 970 64.1
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 6.2e-286 988.0 667 77.2
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 2.5e-282 976.1 925 63.6
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.1e-279 967.2 778 70.8
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 4.7e-209 732.6 583 70.2
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 9.2e-197 691.8 531 67.8
Rhsim03G0121600 Rhododendron simsii HOM05D003924 ORTHO05D005216 1.2e-180 638.3 377 86.7
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 1.2e-175 621.7 477 71.7
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 1.3e-169 601.7 950 39.3
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.7e-158 564.7 294 93.9
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 4.5e-143 513.5 444 66.0
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 1.0e-131 475.7 1149 37.0
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 1.2e-130 472.2 375 71.7
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 2.7e-119 434.5 850 37.4
Nitab4.5_0000061g0410 Nicotiana tabacum HOM05D003924 ORTHO05D005216 5.9e-119 433.3 313 73.5
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 1.0e-118 432.6 237 89.0
FAN12G0118 Fragaria x ananassa HOM05D003924 ORTHO05D005216 4.4e-114 417.2 363 67.5
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 4.0e-99 367.5 573 42.4
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 5.2e-99 367.1 1008 29.4
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 3.7e-89 334.3 212 77.4
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 9.2e-88 329.7 181 86.2
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 9.2e-88 329.7 181 86.2
SEGI_04277 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.3e-86 325.1 215 77.7
SEGI_05715 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.1e-85 322.8 215 77.2
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 2.1e-84 318.5 174 89.1
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 4.7e-84 317.4 339 59.9
Oeu055056.1 Olea europaea HOM05D003924 ORTHO05D005216 5.8e-82 310.5 224 71.9
SHI16912 Sapria himalayana HOM05D003924 ORTHO05D005216 5.6e-69 267.3 382 51.6
HPP92_017238 Vanilla planifolia HOM05D003924 ORTHO05D005216 3.8e-65 254.6 364 52.5
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 2.4e-64 251.9 404 42.1
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 9.6e-61 240.0 142 86.6
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 4.8e-60 237.7 205 68.8
SEGI_09139 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 9.0e-59 233.4 164 73.8
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 8.4e-57 226.9 318 44.3
SEGI_15949 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 7.1e-56 223.8 154 76.0
Os02g0631500 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.6e-55 222.6 339 45.4
Aqoxy298s005 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 7.4e-53 213.8 138 74.6
BcaC02g07419 Brassica carinata HOM05D003924 ORTHO05D005216 2.0e-50 205.7 325 41.2
Aqoxy298s002 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.9e-45 189.1 159 67.9
Cpa.g.sc1.272 Carica papaya HOM05D003924 ORTHO05D005216 4.5e-42 177.9 252 53.6
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 1.6e-39 169.5 120 68.3
Os02g0631601 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.4e-38 166.4 96 84.4
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 2.4e-35 155.6 222 45.5
Os04g0523350 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 9.1e-35 153.7 102 74.5
Atru.chr12.624 Acer truncatum HOM05D003924 ORTHO05D005216 4.2e-32 144.8 107 76.6
AUR62023872 Chenopodium quinoa HOM05D003924 ORTHO05D000112 4.2e-32 144.8 134 61.9
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 7.2e-32 144.1 77 89.6
Oeu055057.1 Olea europaea HOM05D001574 ORTHO05D000708 8.8e-30 137.1 119 70.6
Aqoxy298s004 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.2e-26 126.7 77 80.5
Psat7g256680 Pisum sativum HOM05D003924 ORTHO05D005216 3.5e-26 125.2 213 41.3
C04p28760 Brassica napus HOM05D003924 ORTHO05D020089 3.2e-24 118.6 87 65.5
Os04g0523200 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 4.2e-24 118.2 113 61.9
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 1.8e-22 112.8 65 89.2
Lsat_1_v5_gn_0_39640 Lactuca sativa HOM05D003924 ORTHO05D005911 1.5e-21 109.8 83 61.4
TPR.G40375 Trifolium pratense HOM05D003924 ORTHO05D005216 2.0e-21 109.4 72 75.0
MBI04_g36907_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 2.4e-19 102.4 100 61.0
AL879U10010 Arabidopsis lyrata HOM05D003924 ORTHO05D000708 1.1e-16 93.6 59 81.4
SHI16913 Sapria himalayana HOM05D000002 ORTHO05D000001 1.6e-15 89.7 77 58.4
C07p14600 Brassica napus HOM05D003924 ORTHO05D020089 8.0e-15 87.4 69 60.9
BcaC02g10454 Brassica carinata HOM05D003924 ORTHO05D020089 3.0e-14 85.5 57 68.4
Prupe.3G086600 Prunus persica HOM05D003924 ORTHO05D005216 3.0e-14 85.5 126 46.0
BolC4t24411H Brassica oleracea HOM05D003924 ORTHO05D020089 6.8e-14 84.3 57 66.7
SHI16920 Sapria himalayana HOM05D003924 ORTHO05D002750 3.7e-12 78.6 46 84.8
Hma1.2p1_3877F.1_g337870 Hydrangea macrophylla HOM05D003924 ORTHO05D228195 1.4e-11 76.6 53 71.7
BcaC02g07417 Brassica carinata HOM05D003924 ORTHO05D005216 4.1e-11 75.1 56 62.5
Hma1.2p1_0786F.1_g217640 Hydrangea macrophylla HOM05D003924 ORTHO05D228318 1.2e-10 73.6 50 72.0
Atru.chr12.623 Acer truncatum HOM05D003924 ORTHO05D051863 2.9e-09 68.9 113 42.5
C07p01420 Brassica napus HOM05D000209 ORTHO05D000129 1.9e-08 66.2 149 37.6
BraA07t28706Z Brassica rapa HOM05D003924 ORTHO05D020089 7.2e-08 64.3 39 69.2
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 8.8e-06 57.4 42 61.9


User provided reference genes

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