Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017542 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 1.9e-117 426.0 236 100.0
CSS0015612 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 4.2e-93 345.1 263 79.1
Actinidia36852 Actinidia chinensis HOM05D005498 ORTHO05D006719 4.6e-92 341.7 263 76.8
Rhsim12G0182600 Rhododendron simsii HOM05D005498 ORTHO05D006719 1.3e-89 333.6 263 76.0
CSS0028024 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 1.2e-87 327.0 272 71.0
Dinv13692 Davidia involucrata HOM05D005498 ORTHO05D006719 1.7e-86 323.2 257 72.8
TAR622G0889 Trochodendron aralioides HOM05D005498 ORTHO05D006719 2.9e-86 322.4 263 73.4
Cc04_g05550 Coffea canephora HOM05D005498 ORTHO05D006719 2.1e-84 316.2 263 70.7
PGSC0003DMG400014166 Solanum tuberosum HOM05D005498 ORTHO05D006719 2.7e-84 315.8 262 68.7
Lj9A489T67 Lonicera japonica HOM05D005498 ORTHO05D006719 1.3e-83 313.5 284 67.3
Solyc03g117940.3 Solanum lycopersicum HOM05D005498 ORTHO05D006719 1.8e-83 313.2 262 68.3
Sopen03g036840 Solanum pennellii HOM05D005498 ORTHO05D006719 1.8e-83 313.2 262 68.3
SGA_v2.0_scaffold37G14665 Striga asiatica HOM05D005498 ORTHO05D006719 3.3e-82 308.9 261 72.0
Nitab4.5_0000976g0330 Nicotiana tabacum HOM05D005498 ORTHO05D006719 2.2e-81 306.2 279 64.5
Prupe.1G210100 Prunus persica HOM05D005498 ORTHO05D006719 4.8e-81 305.1 263 68.1
Nn3g16174 Nelumbo nucifera HOM05D005498 ORTHO05D006719 8.2e-81 304.3 258 71.3
CAN.G1008.34 Capsicum annuum HOM05D005498 ORTHO05D006719 1.1e-80 303.9 263 66.9
EL10Ac2g02403 Beta vulgaris HOM05D005498 ORTHO05D006719 1.4e-80 303.5 260 67.7
MD13G1135200 Malus domestica HOM05D005498 ORTHO05D006719 1.4e-80 303.5 260 68.8
Nitab4.5_0007669g0040 Nicotiana tabacum HOM05D005498 ORTHO05D006719 1.4e-80 303.5 270 68.9
SGA_v2.0_scaffold5G02818 Striga asiatica HOM05D005498 ORTHO05D006719 2.4e-80 302.8 261 70.1
MBI07_g11055_MAGBIO Magnolia biondii HOM05D005498 ORTHO05D006719 3.1e-80 302.4 263 69.2
MD16G1130900 Malus domestica HOM05D005498 ORTHO05D006719 3.1e-80 302.4 260 68.8
Manes.08G098200 Manihot esculenta HOM05D005498 ORTHO05D006719 4.1e-80 302.0 261 69.7
Ciclev10028992m.g Citrus clementina HOM05D005498 ORTHO05D006719 5.3e-80 301.6 262 67.2
Thecc.01G236700 Theobroma cacao HOM05D005498 ORTHO05D006719 6.9e-80 301.2 264 65.9
MSTRG.22826 Avicennia marina HOM05D005498 ORTHO05D006719 2.6e-79 299.3 261 69.7
Haze_12543 Corylus avellana HOM05D005498 ORTHO05D006719 2.6e-79 299.3 261 65.9
Duzib264G0012 Durio zibethinus HOM05D005498 ORTHO05D006719 3.4e-79 298.9 261 65.1
CiPaw.05G096800 Carya illinoinensis HOM05D005498 ORTHO05D006719 7.7e-79 297.7 263 64.6
AUR62037729 Chenopodium quinoa HOM05D005498 ORTHO05D006719 7.7e-79 297.7 262 70.2
CsaV3_6G007610 Cucumis sativus L. HOM05D005498 ORTHO05D006719 1.0e-78 297.4 261 65.9
Sed0026884 Sechium edule HOM05D005498 ORTHO05D006719 1.0e-78 297.4 261 67.4
RcHm_v2.0_Chr4g0428191 Rosa chinensis HOM05D005498 ORTHO05D006719 1.7e-78 296.6 260 68.8
Potri.003G158800 Populus trichocarpa HOM05D005498 ORTHO05D006719 3.8e-78 295.4 263 68.4
FvH4_4g21991 Fragaria vesca HOM05D005498 ORTHO05D006719 5.0e-78 295.0 260 68.8
FAN07G2790 Fragaria x ananassa HOM05D005498 ORTHO05D006719 5.0e-78 295.0 260 68.8
Gohir.A10G154800 Gossypium hirsutum HOM05D005498 ORTHO05D006719 5.0e-78 295.0 261 64.8
Gohir.D10G111100 Gossypium hirsutum HOM05D005498 ORTHO05D006719 5.0e-78 295.0 261 64.8
Gorai.011G122500 Gossypium raimondii HOM05D005498 ORTHO05D006719 5.0e-78 295.0 261 64.8
Hund15325 Selenicereus undatus HOM05D005498 ORTHO05D006719 5.0e-78 295.0 276 62.7
Aqoxy3G01715 Aquilegia oxysepala HOM05D005498 ORTHO05D006719 6.5e-78 294.7 245 71.0
PGR119G1930 Punica granatum HOM05D005498 ORTHO05D006719 6.5e-78 294.7 263 64.6
Eucgr.J01697 Eucalyptus grandis HOM05D005498 ORTHO05D006719 8.5e-78 294.3 241 72.2
HPP92_001926 Vanilla planifolia HOM05D005498 ORTHO05D006356 1.1e-77 293.9 263 65.8
FAN17G1337 Fragaria x ananassa HOM05D005498 ORTHO05D006719 4.2e-77 292.0 260 68.1
Migut.I00649 Erythranthe guttata HOM05D005498 ORTHO05D006719 7.2e-77 291.2 261 67.8
Glyma.10G123200 Glycine max HOM05D005498 ORTHO05D006719 7.2e-77 291.2 259 65.6
arahy.Tifrunner.gnm1.ann1.LXGX9H Arachis hypogaea HOM05D005498 ORTHO05D006719 9.4e-77 290.8 270 64.8
TWI75G0967 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 9.4e-77 290.8 260 64.6
Glyma.20G075100 Glycine max HOM05D005498 ORTHO05D006719 1.2e-76 290.4 261 64.4
VMungo0251G3521 Vigna mungo HOM05D005498 ORTHO05D006719 1.6e-76 290.0 261 68.2
arahy.Tifrunner.gnm1.ann1.JCC7XL Arachis hypogaea HOM05D005498 ORTHO05D006719 2.7e-76 289.3 270 64.1
Lalb_Chr21g0307771 Lupinus albus HOM05D005498 ORTHO05D006719 2.7e-76 289.3 263 66.2
Ca_04134_v3 Cicer arietinum L. HOM05D005498 ORTHO05D006719 3.6e-76 288.9 259 67.6
THA.LOC104820204 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 3.6e-76 288.9 245 66.9
TWI75G1441 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 4.6e-76 288.5 260 65.4
GSVIVG01001138001 Vitis vinifera HOM05D005498 ORTHO05D006719 1.0e-75 287.3 262 66.8
Lj3g0014785 Lotus japonicus HOM05D005498 ORTHO05D006719 1.4e-75 287.0 261 64.8
Medtr6g004180 Medicago truncatula HOM05D005498 ORTHO05D006719 1.8e-75 286.6 252 66.3
Sabra03G0115200 Salix brachista HOM05D005498 ORTHO05D006719 2.3e-75 286.2 258 67.8
TWI36G1055 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 2.3e-75 286.2 241 67.2
LjContig00470g0019612 Lotus japonicus HOM05D005498 ORTHO05D006719 3.9e-75 285.4 261 65.5
Sabra01G0050700 Salix brachista HOM05D005498 ORTHO05D006719 3.9e-75 285.4 293 62.5
Phvul.003G001500 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 5.1e-75 285.0 261 64.4
Psat1g052840 Pisum sativum HOM05D005498 ORTHO05D006719 1.5e-74 283.5 262 67.2
CDE11G0700 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 1.3e-73 280.4 261 65.9
MELO3C022370.2 Cucumis melo HOM05D005498 ORTHO05D006719 2.2e-73 279.6 257 64.2
ATR0582G093 Amborella trichopoda HOM05D005498 ORTHO05D006719 4.8e-73 278.5 264 64.0
HanXRQChr06g0174511 Helianthus annuus HOM05D005498 ORTHO05D006719 1.1e-72 277.3 258 63.6
PSO478G3668 Papaver somniferum HOM05D005498 ORTHO05D006719 1.1e-72 277.3 264 65.9
PSO017G5587 Papaver somniferum HOM05D005498 ORTHO05D006719 1.4e-72 276.9 258 66.3
CARHR009720 Cardamine hirsuta HOM05D005498 ORTHO05D006719 1.8e-72 276.6 251 62.9
Thhalv10008494m.g Eutrema salsugineum HOM05D005498 ORTHO05D006719 3.1e-72 275.8 257 62.3
Potri.001G072100 Populus trichocarpa HOM05D005498 ORTHO05D006719 3.1e-72 275.8 263 63.9
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 5.3e-72 275.0 250 66.4
Lsat_1_v5_gn_5_9301 Lactuca sativa HOM05D005498 ORTHO05D006719 9.1e-72 274.2 266 61.3
AL1G20310 Arabidopsis lyrata HOM05D005498 ORTHO05D006719 1.2e-71 273.9 238 65.5
Os02g0234800 Oryza sativa ssp. japonica HOM05D005498 ORTHO05D006719 1.5e-71 273.5 263 64.3
Carub.0001s0910 Capsella rubella HOM05D005498 ORTHO05D006719 2.0e-71 273.1 239 64.4
Lalb_Chr02g0144691 Lupinus albus HOM05D005498 ORTHO05D006719 4.5e-71 271.9 263 63.9
TPR.G25230 Trifolium pratense HOM05D005498 ORTHO05D006719 4.5e-71 271.9 256 64.8
HanXRQChr05g0154501 Helianthus annuus HOM05D005498 ORTHO05D006719 7.7e-71 271.2 263 61.6
AT1G09760 Arabidopsis thaliana HOM05D005498 ORTHO05D006719 1.0e-70 270.8 238 64.7
A09p65320 Brassica napus HOM05D005498 ORTHO05D006719 1.0e-70 270.8 245 65.7
A06p06430 Brassica napus HOM05D005498 ORTHO05D006719 1.3e-70 270.4 258 62.8
BraA06t23854Z Brassica rapa HOM05D005498 ORTHO05D006719 1.3e-70 270.4 258 62.8
ECA246G1673 Erigeron canadensis HOM05D005498 ORTHO05D006719 1.7e-70 270.0 256 61.3
BcaC07g41860 Brassica carinata HOM05D005498 ORTHO05D006719 2.2e-70 269.6 245 65.7
BraA09t41876Z Brassica rapa HOM05D005498 ORTHO05D006719 2.2e-70 269.6 245 65.3
C08p49270 Brassica napus HOM05D005498 ORTHO05D006719 2.9e-70 269.2 245 65.3
C05p07830 Brassica napus HOM05D005498 ORTHO05D006719 6.5e-70 268.1 258 62.0
BolC5t29534H Brassica oleracea HOM05D005498 ORTHO05D006719 6.5e-70 268.1 258 62.0
BolC8t52462H Brassica oleracea HOM05D005498 ORTHO05D006719 6.5e-70 268.1 245 64.9
C08p13170 Brassica napus HOM05D005498 ORTHO05D006719 8.5e-70 267.7 245 63.3
BolC8t48946H Brassica oleracea HOM05D005498 ORTHO05D006719 8.5e-70 267.7 245 63.3
Sp1g08350 Schrenkiella parvula HOM05D005498 ORTHO05D006719 1.4e-69 266.9 260 61.2
Atru.chr12.1486 Acer truncatum HOM05D005498 ORTHO05D006719 1.9e-69 266.5 260 61.9
BraA08t35348Z Brassica rapa HOM05D005498 ORTHO05D006719 1.9e-69 266.5 245 61.6
A08p34360 Brassica napus HOM05D005498 ORTHO05D006719 5.5e-69 265.0 245 61.6
Zm00001eb064600 Zea mays HOM05D005498 ORTHO05D006719 9.4e-69 264.2 262 62.2
THA.LOC104823693 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 2.7e-68 262.7 263 59.7
SalBow7G1334 Salvia bowleyana HOM05D005498 ORTHO05D006719 3.0e-67 259.2 260 64.2
Sc04g0000070 Simmondsia chinensis HOM05D005498 ORTHO05D006719 3.0e-67 259.2 236 67.8
COL.COLO4_24568 Corchorus olitorius HOM05D005498 ORTHO05D006719 1.1e-66 257.3 263 63.5
Sc04g0000010 Simmondsia chinensis HOM05D005498 ORTHO05D006719 2.8e-65 252.7 223 69.1
Aa31LG1G5230 Aethionema arabicum HOM05D005498 ORTHO05D006719 6.3e-65 251.5 239 61.5
Hund15317 Selenicereus undatus HOM05D005498 ORTHO05D006719 7.2e-61 238.0 234 62.4
Mapoly0014s0064 Marchantia polymorpha HOM05D005498 ORTHO05D006719 3.0e-59 232.6 246 59.3
AUR62020276 Chenopodium quinoa HOM05D005498 ORTHO05D006719 8.8e-59 231.1 210 70.0
Peaxi162Scf00314g00830 Petunia axillaris HOM05D005498 ORTHO05D006719 3.2e-53 212.6 204 63.7
Actinidia08921 Actinidia chinensis HOM05D005498 ORTHO05D006719 9.4e-53 211.1 179 69.3
Pp3c23_20060 Physcomitrium patens HOM05D005498 ORTHO05D006719 4.7e-52 208.8 251 55.0
Pp3c20_1630 Physcomitrium patens HOM05D005498 ORTHO05D006719 4.0e-51 205.7 250 51.2
Ah.10g024870 Amaranthus hybridus HOM05D005498 ORTHO05D006719 4.4e-50 202.2 153 77.1
Cpa.g.sc2660.1 Carica papaya HOM05D005498 ORTHO05D006719 7.5e-50 201.4 153 75.8
Pp3c8_21390 Physcomitrium patens HOM05D005498 ORTHO05D006719 7.5e-50 201.4 246 51.6
unitig_8.g3047 Utricularia gibba HOM05D005498 ORTHO05D006719 8.0e-44 181.4 241 50.2
Gorai.007G212800 Gossypium raimondii HOM05D005498 ORTHO05D006719 4.4e-42 175.6 173 56.1
Phvul.009G235000 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 2.4e-40 169.9 160 61.9
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 9.5e-37 157.9 270 40.4
Gorai.006G052400 Gossypium raimondii HOM05D005498 ORTHO05D006719 2.3e-35 153.3 150 58.0
AagrBONN_evm.TU.Sc2ySwM_362.2343 Anthoceros agrestis HOM05D005498 ORTHO05D006719 2.0e-34 150.2 193 46.6
Gohir.D11G198700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.3e-33 147.5 141 58.9
Oeu027824.1 Olea europaea HOM05D005498 ORTHO05D006719 1.4e-32 144.1 246 42.3
SMO203G0044 Selaginella moellendorffii HOM05D005498 ORTHO05D006719 4.1e-32 142.5 153 59.5
DCAR_021388 Daucus carota HOM05D005498 ORTHO05D006719 9.2e-32 141.4 125 64.8
Gohir.D13G071700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 2.7e-31 139.8 141 55.3
Gohir.D13G083750 Gossypium hirsutum HOM05D005498 ORTHO05D006719 5.9e-31 138.7 147 54.4
Gorai.010G065400 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.3e-25 120.9 90 66.7
Ah.10g024860 Amaranthus hybridus HOM05D005498 ORTHO05D006719 2.4e-24 116.7 110 61.8
Cpa.g.sc38.27 Carica papaya HOM05D005498 ORTHO05D006719 7.3e-21 105.1 114 57.0
PRCOL_00001779 Prasinoderma coloniale HOM05D005498 ORTHO05D006719 1.3e-17 94.4 235 31.5
MELO3C026686.2 Cucumis melo HOM05D005498 ORTHO05D006719 4.9e-17 92.4 94 62.8
FAN12G0959 Fragaria x ananassa HOM05D005498 ORTHO05D006719 1.1e-13 81.3 67 62.7
arahy.Tifrunner.gnm1.ann1.UV1K7Q Arachis hypogaea HOM05D005498 ORTHO05D006719 3.3e-13 79.7 65 61.5
RcHm_v2.0_Chr4g0427471 Rosa chinensis HOM05D000753 ORTHO05D006719 2.1e-12 77.0 100 53.0
PSO591G0416 Papaver somniferum HOM05D005498 ORTHO05D006719 3.2e-08 63.2 71 59.2
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 1.6e-07 60.8 37 73.0
CBR_g3778 Chara braunii HOM05D005498 ORTHO05D006719 6.0e-07 58.9 46 60.9


User provided reference genes

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