Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015638 Camellia sinensis var. sinensis HOM05D001829 ORTHO05D003548 4.6e-24 113.6 53 100.0
Actinidia26178 Actinidia chinensis HOM05D001829 ORTHO05D003548 3.7e-13 77.4 38 92.1
Peaxi162Scf00011g01537 Petunia axillaris HOM05D001829 ORTHO05D003548 6.2e-13 76.6 38 86.8
TAR628G0621 Trochodendron aralioides HOM05D001829 ORTHO05D003548 6.2e-13 76.6 36 88.9
CAN.G855.15 Capsicum annuum HOM05D001829 ORTHO05D003548 8.1e-13 76.3 40 82.5
Dinv19424 Davidia involucrata HOM05D001829 ORTHO05D003548 1.1e-12 75.9 36 91.7
Psat1g222920 Pisum sativum HOM05D001829 ORTHO05D003548 1.4e-12 75.5 40 85.0
Cc02_g23320 Coffea canephora HOM05D001829 ORTHO05D003548 1.8e-12 75.1 38 86.8
Nitab4.5_0000787g0020 Nicotiana tabacum HOM05D001829 ORTHO05D003548 3.1e-12 74.3 36 86.1
Nitab4.5_0005169g0060 Nicotiana tabacum HOM05D001829 ORTHO05D003548 3.1e-12 74.3 36 86.1
vmacro01706 Vaccinium macrocarpon HOM05D001829 ORTHO05D003548 3.1e-12 74.3 36 91.7
Aqoxy5G00852 Aquilegia oxysepala HOM05D001829 ORTHO05D003548 4.0e-12 73.9 36 86.1
arahy.Tifrunner.gnm1.ann1.1V6YFN Arachis hypogaea HOM05D001829 ORTHO05D003548 4.0e-12 73.9 36 86.1
arahy.Tifrunner.gnm1.ann1.AXP3WA Arachis hypogaea HOM05D001829 ORTHO05D003548 4.0e-12 73.9 36 86.1
Haze_10033 Corylus avellana HOM05D001829 ORTHO05D003548 4.0e-12 73.9 35 91.4
Dinv29604 Davidia involucrata HOM05D001829 ORTHO05D003548 4.0e-12 73.9 35 91.4
Nn5g27503 Nelumbo nucifera HOM05D001829 ORTHO05D003548 4.0e-12 73.9 37 83.8
QL02p100929 Quercus lobata HOM05D001829 ORTHO05D003548 4.0e-12 73.9 35 91.4
Solyc01g103420.4 Solanum lycopersicum HOM05D001829 ORTHO05D003548 4.0e-12 73.9 38 81.6
Sopen01g045770 Solanum pennellii HOM05D001829 ORTHO05D003548 4.0e-12 73.9 38 81.6
Ciclev10000901m.g Citrus clementina HOM05D001829 ORTHO05D003548 5.3e-12 73.6 38 84.2
Hma1.2p1_0633F.1_g192740 Hydrangea macrophylla HOM05D001829 ORTHO05D003548 5.3e-12 73.6 35 88.6
PSO017G6510 Papaver somniferum HOM05D001829 ORTHO05D003548 5.3e-12 73.6 38 81.6
PSO170G5852 Papaver somniferum HOM05D001829 ORTHO05D003548 5.3e-12 73.6 38 81.6
CSS0005042 Camellia sinensis var. sinensis HOM05D001829 ORTHO05D003548 6.9e-12 73.2 38 78.9
CiPaw.05G003800 Carya illinoinensis HOM05D001829 ORTHO05D003548 6.9e-12 73.2 37 83.8
Prupe.1G581100 Prunus persica HOM05D001829 ORTHO05D003548 6.9e-12 73.2 37 83.8
TAR381G0284 Trochodendron aralioides HOM05D001829 ORTHO05D003548 6.9e-12 73.2 36 86.1
Rhsim11G0121900 Rhododendron simsii HOM05D001829 ORTHO05D003548 9.0e-12 72.8 36 88.9
TPR.G29252 Trifolium pratense HOM05D001829 ORTHO05D003548 9.0e-12 72.8 40 80.0
Potri.004G225800 Populus trichocarpa HOM05D001829 ORTHO05D003548 1.2e-11 72.4 36 83.3
vmacro19858 Vaccinium macrocarpon HOM05D001829 ORTHO05D003548 1.5e-11 72.0 49 71.4
GSVIVG01023232001 Vitis vinifera HOM05D001829 ORTHO05D003548 1.5e-11 72.0 36 86.1
Duzib132G1055 Durio zibethinus HOM05D001829 ORTHO05D003548 2.0e-11 71.6 38 78.9
ClCG08G000400 Citrullus lanatus HOM05D001829 ORTHO05D003548 2.6e-11 71.2 38 84.2
Actinidia38991 Actinidia chinensis HOM05D001829 ORTHO05D003548 3.4e-11 70.9 36 88.9
Hma1.2p1_0884F.1_g232370 Hydrangea macrophylla HOM05D001829 ORTHO05D003548 3.4e-11 70.9 39 79.5
Thecc.02G016800 Theobroma cacao HOM05D001829 ORTHO05D003548 3.4e-11 70.9 38 78.9
Duzib248G0405 Durio zibethinus HOM05D001829 ORTHO05D003548 4.5e-11 70.5 38 76.3
Glyma.16G002300 Glycine max HOM05D001829 ORTHO05D003548 4.5e-11 70.5 37 83.8
Nitab4.5_0000667g0010 Nicotiana tabacum HOM05D001829 ORTHO05D003548 4.5e-11 70.5 38 81.6
Nitab4.5_0022329g0010 Nicotiana tabacum HOM05D001829 ORTHO05D003548 4.5e-11 70.5 38 81.6
Phvul.006G219800 Phaseolus vulgaris HOM05D001829 ORTHO05D003548 4.5e-11 70.5 41 75.6
CiPaw.06G175000 Carya illinoinensis HOM05D001829 ORTHO05D003548 5.8e-11 70.1 38 78.9
MELO3C022210.2 Cucumis melo HOM05D001829 ORTHO05D003548 5.8e-11 70.1 38 81.6
CsaV3_5G040380 Cucumis sativus L. HOM05D001829 ORTHO05D003548 5.8e-11 70.1 38 81.6
HanXRQChr03g0067961 Helianthus annuus HOM05D001829 ORTHO05D003548 5.8e-11 70.1 35 85.7
Oeu045913.1 Olea europaea HOM05D001829 ORTHO05D003548 5.8e-11 70.1 38 76.3
Prupe.1G550000 Prunus persica HOM05D001829 ORTHO05D003548 5.8e-11 70.1 37 81.1
Sabra01G0171500 Salix brachista HOM05D001829 ORTHO05D003548 5.8e-11 70.1 36 80.6
Thecc.06G095900 Theobroma cacao HOM05D001829 ORTHO05D003548 5.8e-11 70.1 41 73.2
TWI14G0679 Tripterygium wilfordii HOM05D001829 ORTHO05D003548 5.8e-11 70.1 36 80.6
Actinidia00172 Actinidia chinensis HOM05D001829 ORTHO05D003548 7.6e-11 69.7 35 85.7
Ca_00041_v3 Cicer arietinum L. HOM05D001829 ORTHO05D003548 7.6e-11 69.7 35 85.7
Eucgr.I02778 Eucalyptus grandis HOM05D001829 ORTHO05D003548 7.6e-11 69.7 38 78.9
Lalb_Chr15g0090791 Lupinus albus HOM05D001829 ORTHO05D003548 7.6e-11 69.7 36 83.3
MD15G1403800 Malus domestica HOM05D001829 ORTHO05D003548 7.6e-11 69.7 36 83.3
DCAR_029162 Daucus carota HOM05D001829 ORTHO05D003548 9.9e-11 69.3 36 80.6
HanXRQChr06g0182771 Helianthus annuus HOM05D001829 ORTHO05D003548 9.9e-11 69.3 35 88.6
Lj5C270G4 Lonicera japonica HOM05D001829 ORTHO05D001339 9.9e-11 69.3 37 75.7
Oeu043625.3 Olea europaea HOM05D001829 ORTHO05D003548 9.9e-11 69.3 35 82.9
SalBow7G4033 Salvia bowleyana HOM05D001829 ORTHO05D003548 9.9e-11 69.3 38 78.9
VMungo0540G0490 Vigna mungo HOM05D001829 ORTHO05D003548 9.9e-11 69.3 37 81.1
Atru.chr6.543 Acer truncatum HOM05D001829 ORTHO05D003548 1.3e-10 68.9 38 78.9
FvH4_5g32510 Fragaria vesca HOM05D001829 ORTHO05D003548 1.3e-10 68.9 35 82.9
FAN08G2186 Fragaria x ananassa HOM05D001829 ORTHO05D003548 1.3e-10 68.9 35 82.9
FAN13G0664 Fragaria x ananassa HOM05D001829 ORTHO05D003548 1.3e-10 68.9 35 82.9
FAN18G3448 Fragaria x ananassa HOM05D001829 ORTHO05D003548 1.3e-10 68.9 35 82.9
MD08G1216600 Malus domestica HOM05D001829 ORTHO05D003548 1.3e-10 68.9 36 77.8
Manes.07G025700 Manihot esculenta HOM05D001829 ORTHO05D003548 1.3e-10 68.9 36 80.6
RcHm_v2.0_Chr7g0229091 Rosa chinensis HOM05D001829 ORTHO05D003548 1.3e-10 68.9 35 82.9
Lsat_1_v5_gn_9_119700 Lactuca sativa HOM05D001829 ORTHO05D003548 1.7e-10 68.6 35 85.7
Manes.10G116400 Manihot esculenta HOM05D001829 ORTHO05D003548 1.7e-10 68.6 36 80.6
CANSAT54G1136 Cannabis sativa HOM05D001829 ORTHO05D003548 2.2e-10 68.2 36 86.1
CDE05G1946 Ceratophyllum demersum HOM05D001829 ORTHO05D003548 2.2e-10 68.2 36 80.6
CDE05G3483 Ceratophyllum demersum HOM05D001829 ORTHO05D003548 2.2e-10 68.2 36 80.6
Gohir.A12G044600 Gossypium hirsutum HOM05D001829 ORTHO05D003548 2.2e-10 68.2 38 73.7
Gohir.D12G043600 Gossypium hirsutum HOM05D001829 ORTHO05D003548 2.2e-10 68.2 38 73.7
Gorai.008G045900 Gossypium raimondii HOM05D001829 ORTHO05D003548 2.2e-10 68.2 38 73.7
MD15G1438000 Malus domestica HOM05D001829 ORTHO05D003548 2.2e-10 68.2 36 80.6
Cpa.g.sc113.29 Carica papaya HOM05D001829 ORTHO05D003548 2.9e-10 67.8 36 77.8
Cfa008128 Carpinus fangiana HOM05D001829 ORTHO05D003548 2.9e-10 67.8 36 80.6
Haze_13907 Corylus avellana HOM05D001829 ORTHO05D003548 2.9e-10 67.8 36 80.6
ECA236G4953 Erigeron canadensis HOM05D001829 ORTHO05D003548 2.9e-10 67.8 35 85.7
Potri.003G005700 Populus trichocarpa HOM05D001829 ORTHO05D003548 2.9e-10 67.8 38 73.7
PGR042G1417 Punica granatum HOM05D001829 ORTHO05D003548 2.9e-10 67.8 38 78.9
QL09p004825 Quercus lobata HOM05D001829 ORTHO05D003548 2.9e-10 67.8 35 82.9
Sabra03G0002900 Salix brachista HOM05D001829 ORTHO05D007093 2.9e-10 67.8 38 73.7
GSVIVG01034834001 Vitis vinifera HOM05D001829 ORTHO05D003548 2.9e-10 67.8 35 82.9
GSVIVG01034840001 Vitis vinifera HOM05D001829 ORTHO05D003548 2.9e-10 67.8 35 82.9
HanXRQChr09g0249081 Helianthus annuus HOM05D001829 ORTHO05D003548 3.8e-10 67.4 35 82.9
Lsat_1_v5_gn_7_76760 Lactuca sativa HOM05D001829 ORTHO05D003548 3.8e-10 67.4 35 85.7
MD08G1243800 Malus domestica HOM05D001829 ORTHO05D003548 3.8e-10 67.4 37 75.7
Duzib192G0272 Durio zibethinus HOM05D001829 ORTHO05D003548 4.9e-10 67.0 40 70.0
Gohir.D02G237100 Gossypium hirsutum HOM05D001829 ORTHO05D003548 4.9e-10 67.0 36 80.6
Lj3g0019264 Lotus japonicus HOM05D001829 ORTHO05D003548 4.9e-10 67.0 38 76.3
CiPaw.03G018900 Carya illinoinensis HOM05D001829 ORTHO05D003548 6.4e-10 66.6 36 80.6
COL.COLO4_17710 Corchorus olitorius HOM05D001829 ORTHO05D003548 6.4e-10 66.6 36 80.6
Glyma.12G165900 Glycine max HOM05D001829 ORTHO05D003548 6.4e-10 66.6 37 78.4
Gohir.D06G197400 Gossypium hirsutum HOM05D001829 ORTHO05D003548 6.4e-10 66.6 41 68.3
Gorai.010G229700 Gossypium raimondii HOM05D001829 ORTHO05D003548 6.4e-10 66.6 41 68.3
Solyc10g044450.3 Solanum lycopersicum HOM05D001829 ORTHO05D003548 6.4e-10 66.6 40 72.5
Sopen10g009260 Solanum pennellii HOM05D001829 ORTHO05D003548 6.4e-10 66.6 40 72.5
Migut.N00848 Erythranthe guttata HOM05D001829 ORTHO05D003548 8.4e-10 66.2 36 77.8
TWI23G1244 Tripterygium wilfordii HOM05D001829 ORTHO05D003548 8.4e-10 66.2 37 75.7
CANSAT25G1748 Cannabis sativa HOM05D001829 ORTHO05D003548 1.1e-09 65.9 35 80.0
Gohir.A06G188800 Gossypium hirsutum HOM05D001829 ORTHO05D003548 1.1e-09 65.9 41 68.3
MBI03_g01214_MAGBIO Magnolia biondii HOM05D001829 ORTHO05D003548 1.1e-09 65.9 37 75.7
Sed0004336 Sechium edule HOM05D001829 ORTHO05D003548 1.1e-09 65.9 38 76.3
TWI59G0266 Tripterygium wilfordii HOM05D001829 ORTHO05D003548 1.1e-09 65.9 35 77.1
Sed0001549 Sechium edule HOM05D001829 ORTHO05D003548 1.4e-09 65.5 38 73.7
Sc20g0003300 Simmondsia chinensis HOM05D001829 ORTHO05D003548 1.4e-09 65.5 35 80.0
SGA_v2.0_scaffold42G15901 Striga asiatica HOM05D001829 ORTHO05D003548 1.4e-09 65.5 36 77.8
Migut.B00752 Erythranthe guttata HOM05D001829 ORTHO05D003548 1.9e-09 65.1 35 77.1
COL.COLO4_30473 Corchorus olitorius HOM05D001829 ORTHO05D003548 2.4e-09 64.7 35 77.1
Lj9A298T75 Lonicera japonica HOM05D001829 ORTHO05D003548 2.4e-09 64.7 35 82.9
Peaxi162Scf00150g01711 Petunia axillaris HOM05D001829 ORTHO05D003548 3.2e-09 64.3 38 73.7
HPP92_004491 Vanilla planifolia HOM05D001829 ORTHO05D003548 4.2e-09 63.9 36 77.8
arahy.Tifrunner.gnm1.ann1.UF24CP Arachis hypogaea HOM05D001829 ORTHO05D003548 5.5e-09 63.5 38 71.1
Medtr3g005510 Medicago truncatula HOM05D001829 ORTHO05D003548 5.5e-09 63.5 38 68.4
Gorai.005G265700 Gossypium raimondii HOM05D001829 ORTHO05D003548 7.1e-09 63.2 36 77.8
Lj6g0013339 Lotus japonicus HOM05D001829 ORTHO05D003548 7.1e-09 63.2 35 77.1
Potri.019G077500 Populus trichocarpa HOM05D001829 ORTHO05D003548 9.3e-09 62.8 39 69.2
DCAR_006663 Daucus carota HOM05D001829 ORTHO05D003548 1.6e-08 62.0 35 77.1
Psat1g000720 Pisum sativum HOM05D001829 ORTHO05D003548 1.6e-08 62.0 38 65.8
PGR042G1265 Punica granatum HOM05D001829 ORTHO05D003548 1.6e-08 62.0 39 66.7
Sabra19G0088600 Salix brachista HOM05D001829 ORTHO05D003548 1.6e-08 62.0 31 83.9
SEGI_13151 Sequoiadendron giganteum HOM05D001829 ORTHO05D003548 1.6e-08 62.0 39 64.1
TAR636G0664 Trochodendron aralioides HOM05D001829 ORTHO05D003548 1.6e-08 62.0 34 79.4
ATR1136G031 Amborella trichopoda HOM05D001829 ORTHO05D003548 2.1e-08 61.6 36 72.2
Glyma.04G257000 Glycine max HOM05D001829 ORTHO05D003548 2.7e-08 61.2 35 74.3
HPP92_004463 Vanilla planifolia HOM05D001829 ORTHO05D003548 2.7e-08 61.2 35 77.1
Glyma.06G324500 Glycine max HOM05D001829 ORTHO05D003548 3.5e-08 60.8 38 73.7
Lalb_Chr18g0061071 Lupinus albus HOM05D001829 ORTHO05D003548 3.5e-08 60.8 36 69.4
THA.LOC104806760 Tarenaya hassleriana HOM05D001829 ORTHO05D003548 3.5e-08 60.8 38 65.8
VMungo1080G1494 Vigna mungo HOM05D001829 ORTHO05D003548 3.5e-08 60.8 38 65.8
TPR.G25505 Trifolium pratense HOM05D001829 ORTHO05D003548 4.6e-08 60.5 38 63.2
unitig_8.g4545 Utricularia gibba HOM05D001829 ORTHO05D003548 4.6e-08 60.5 36 69.4
Ah.05g168630 Amaranthus hybridus HOM05D001829 ORTHO05D001489 6.0e-08 60.1 38 63.2
AL1G48420 Arabidopsis lyrata HOM05D001829 ORTHO05D003548 7.9e-08 59.7 35 71.4
AT1G33980 Arabidopsis thaliana HOM05D001829 ORTHO05D003548 7.9e-08 59.7 35 71.4
Os04g0440100 Oryza sativa ssp. japonica HOM05D001829 ORTHO05D003548 7.9e-08 59.7 36 69.4
Zm00001eb082220 Zea mays HOM05D001829 ORTHO05D003548 7.9e-08 59.7 36 66.7
CBR_g36287 Chara braunii HOM05D001829 ORTHO05D003548 1.0e-07 59.3 40 62.5
Ca_05538_v3 Cicer arietinum L. HOM05D001829 ORTHO05D003548 1.0e-07 59.3 37 64.9
Hund17550 Selenicereus undatus HOM05D001829 ORTHO05D003548 1.0e-07 59.3 35 68.6
Zm00001eb422950 Zea mays HOM05D001829 ORTHO05D003548 1.0e-07 59.3 36 66.7
Aa31LG9G12070 Aethionema arabicum HOM05D001829 ORTHO05D003548 1.3e-07 58.9 35 74.3
THA.LOC104815973 Tarenaya hassleriana HOM05D001829 ORTHO05D003548 1.3e-07 58.9 39 64.1
TPR.G20672 Trifolium pratense HOM05D001829 ORTHO05D003548 1.3e-07 58.9 38 63.2
Ciclev10019695m.g Citrus clementina HOM05D001829 ORTHO05D003548 1.8e-07 58.5 35 68.6
Pp3c12_4230 Physcomitrium patens HOM05D001829 ORTHO05D003548 1.8e-07 58.5 38 65.8
unitig_578.g15958 Utricularia gibba HOM05D001829 ORTHO05D003548 2.3e-07 58.2 36 69.4
Ciclev10024086m.g Citrus clementina HOM05D001829 ORTHO05D003548 3.0e-07 57.8 36 66.7
Thhalv10007455m.g Eutrema salsugineum HOM05D001829 ORTHO05D003548 3.0e-07 57.8 35 68.6
Pp3c4_15540 Physcomitrium patens HOM05D001829 ORTHO05D003548 3.0e-07 57.8 35 71.4
EL10Ac1g01660 Beta vulgaris HOM05D001829 ORTHO05D003548 3.9e-07 57.4 31 74.2
AUR62022364 Chenopodium quinoa HOM05D001829 ORTHO05D003548 3.9e-07 57.4 38 63.2
AUR62034338 Chenopodium quinoa HOM05D001829 ORTHO05D003548 3.9e-07 57.4 38 63.2
SGA_v2.0_scaffold249G44938 Striga asiatica HOM05D001829 ORTHO05D003548 6.7e-07 56.6 39 64.1
BcaB03g13685 Brassica carinata HOM05D001829 ORTHO05D003548 8.7e-07 56.2 35 68.6
BcaC05g27789 Brassica carinata HOM05D001829 ORTHO05D003548 8.7e-07 56.2 35 68.6
C05p37840 Brassica napus HOM05D001829 ORTHO05D003548 8.7e-07 56.2 35 68.6
Aa31LG6G8200 Aethionema arabicum HOM05D001829 ORTHO05D003548 1.1e-06 55.8 35 68.6
BolC5t32519H Brassica oleracea HOM05D001829 ORTHO05D003548 1.1e-06 55.8 35 68.6
Ciclev10023375m.g Citrus clementina HOM05D001829 ORTHO05D003548 1.1e-06 55.8 36 66.7
BcaB04g17913 Brassica carinata HOM05D001829 ORTHO05D003548 1.5e-06 55.5 35 68.6
A05p24170 Brassica napus HOM05D001829 ORTHO05D003548 1.5e-06 55.5 35 68.6
A08p08420 Brassica napus HOM05D001829 ORTHO05D003548 1.5e-06 55.5 35 68.6
BolC8t47884H Brassica oleracea HOM05D001829 ORTHO05D003548 1.5e-06 55.5 35 68.6
BraA05t21296Z Brassica rapa HOM05D001829 ORTHO05D003548 1.5e-06 55.5 35 68.6
Phvul.005G000800 Phaseolus vulgaris HOM05D001829 ORTHO05D003548 1.5e-06 55.5 38 60.5
SEGI_14492 Sequoiadendron giganteum HOM05D001829 ORTHO05D003548 2.5e-06 54.7 36 61.1
Medtr2g005600 Medicago truncatula HOM05D001829 ORTHO05D003548 3.3e-06 54.3 39 59.0
BcaC08g43827 Brassica carinata HOM05D001829 ORTHO05D003548 4.3e-06 53.9 35 65.7
C06p12110 Brassica napus HOM05D001829 ORTHO05D003548 4.3e-06 53.9 35 65.7
BolC6t36349H Brassica oleracea HOM05D001829 ORTHO05D003548 4.3e-06 53.9 35 65.7
BcaB07g33017 Brassica carinata HOM05D001829 ORTHO05D003548 5.6e-06 53.5 36 69.4
Carub.0001s3206 Capsella rubella HOM05D001829 ORTHO05D003548 7.4e-06 53.1 30 73.3
SHI42179 Sapria himalayana HOM05D001829 ORTHO05D003548 7.4e-06 53.1 34 67.6
BraA09t38799Z Brassica rapa HOM05D001829 ORTHO05D003548 9.6e-06 52.8 36 66.7


User provided reference genes

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