Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015612 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 8.3e-144 513.8 289 100.0
Actinidia36852 Actinidia chinensis HOM05D005498 ORTHO05D006719 2.6e-129 465.7 289 90.0
TAR622G0889 Trochodendron aralioides HOM05D005498 ORTHO05D006719 5.4e-119 431.4 289 84.4
Cc04_g05550 Coffea canephora HOM05D005498 ORTHO05D006719 3.6e-115 418.7 289 81.0
Dinv13692 Davidia involucrata HOM05D005498 ORTHO05D006719 3.1e-114 415.6 289 81.3
Rhsim12G0182600 Rhododendron simsii HOM05D005498 ORTHO05D006719 1.2e-113 413.7 288 83.7
Lj9A489T67 Lonicera japonica HOM05D005498 ORTHO05D006719 1.7e-112 409.8 308 76.3
Nitab4.5_0007669g0040 Nicotiana tabacum HOM05D005498 ORTHO05D006719 1.1e-111 407.1 296 79.7
SGA_v2.0_scaffold37G14665 Striga asiatica HOM05D005498 ORTHO05D006719 1.4e-111 406.8 289 81.7
SGA_v2.0_scaffold5G02818 Striga asiatica HOM05D005498 ORTHO05D006719 1.4e-111 406.8 289 81.0
Nitab4.5_0000976g0330 Nicotiana tabacum HOM05D005498 ORTHO05D006719 1.9e-111 406.4 305 74.4
Migut.I00649 Erythranthe guttata HOM05D005498 ORTHO05D006719 7.1e-111 404.4 289 79.6
Prupe.1G210100 Prunus persica HOM05D005498 ORTHO05D006719 1.3e-109 400.2 289 78.2
MSTRG.22826 Avicennia marina HOM05D005498 ORTHO05D006719 3.0e-109 399.1 287 79.8
PGSC0003DMG400014166 Solanum tuberosum HOM05D005498 ORTHO05D006719 3.0e-109 399.1 289 77.5
MD13G1135200 Malus domestica HOM05D005498 ORTHO05D006719 4.3e-108 395.2 289 78.2
Solyc03g117940.3 Solanum lycopersicum HOM05D005498 ORTHO05D006719 5.6e-108 394.8 289 76.8
Nn3g16174 Nelumbo nucifera HOM05D005498 ORTHO05D006719 9.6e-108 394.0 289 78.9
Sopen03g036840 Solanum pennellii HOM05D005498 ORTHO05D006719 1.3e-107 393.7 289 76.5
Thecc.01G236700 Theobroma cacao HOM05D005498 ORTHO05D006719 1.3e-107 393.7 289 75.4
MD16G1130900 Malus domestica HOM05D005498 ORTHO05D006719 1.6e-107 393.3 289 78.2
Manes.08G098200 Manihot esculenta HOM05D005498 ORTHO05D006719 1.6e-107 393.3 287 77.7
Potri.003G158800 Populus trichocarpa HOM05D005498 ORTHO05D006719 4.8e-107 391.7 289 79.6
MBI07_g11055_MAGBIO Magnolia biondii HOM05D005498 ORTHO05D006719 6.2e-107 391.3 289 77.5
PGR119G1930 Punica granatum HOM05D005498 ORTHO05D006719 1.4e-106 390.2 290 75.2
CiPaw.05G096800 Carya illinoinensis HOM05D005498 ORTHO05D006719 3.1e-106 389.0 289 74.4
Gohir.A10G154800 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.2e-105 387.1 289 74.4
Gohir.D10G111100 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.2e-105 387.1 289 74.4
Ciclev10028992m.g Citrus clementina HOM05D005498 ORTHO05D006719 3.4e-105 385.6 289 75.8
Haze_12543 Corylus avellana HOM05D005498 ORTHO05D006719 3.4e-105 385.6 267 76.8
CAN.G1008.34 Capsicum annuum HOM05D005498 ORTHO05D006719 4.5e-105 385.2 288 75.0
Duzib264G0012 Durio zibethinus HOM05D005498 ORTHO05D006719 7.6e-105 384.4 289 73.7
Gorai.011G122500 Gossypium raimondii HOM05D005498 ORTHO05D006719 7.6e-105 384.4 287 74.2
Sabra03G0115200 Salix brachista HOM05D005498 ORTHO05D006719 1.3e-104 383.6 282 79.1
FvH4_4g21991 Fragaria vesca HOM05D005498 ORTHO05D006719 2.2e-104 382.9 289 78.2
FAN07G2790 Fragaria x ananassa HOM05D005498 ORTHO05D006719 2.9e-104 382.5 288 78.1
Sed0026884 Sechium edule HOM05D005498 ORTHO05D006719 2.9e-104 382.5 289 75.1
Eucgr.J01697 Eucalyptus grandis HOM05D005498 ORTHO05D006719 4.9e-104 381.7 289 76.1
RcHm_v2.0_Chr4g0428191 Rosa chinensis HOM05D005498 ORTHO05D006719 8.4e-104 380.9 289 77.9
GSVIVG01001138001 Vitis vinifera HOM05D005498 ORTHO05D006719 8.4e-104 380.9 289 76.5
FAN17G1337 Fragaria x ananassa HOM05D005498 ORTHO05D006719 3.2e-103 379.0 288 77.4
Glyma.20G075100 Glycine max HOM05D005498 ORTHO05D006719 6.0e-102 374.8 290 73.1
Aqoxy3G01715 Aquilegia oxysepala HOM05D005498 ORTHO05D006719 1.8e-101 373.2 287 76.0
CsaV3_6G007610 Cucumis sativus L. HOM05D005498 ORTHO05D006719 1.8e-101 373.2 289 72.0
HPP92_001926 Vanilla planifolia HOM05D005498 ORTHO05D006356 3.0e-101 372.5 287 73.5
TWI75G0967 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 6.7e-101 371.3 289 72.7
TWI36G1055 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 8.7e-101 370.9 289 72.3
arahy.Tifrunner.gnm1.ann1.LXGX9H Arachis hypogaea HOM05D005498 ORTHO05D006719 1.9e-100 369.8 289 73.0
Lj3g0014785 Lotus japonicus HOM05D005498 ORTHO05D006719 1.9e-100 369.8 289 72.0
EL10Ac2g02403 Beta vulgaris HOM05D005498 ORTHO05D006719 2.5e-100 369.4 289 73.4
Hund15325 Selenicereus undatus HOM05D005498 ORTHO05D006719 2.5e-100 369.4 302 69.2
arahy.Tifrunner.gnm1.ann1.JCC7XL Arachis hypogaea HOM05D005498 ORTHO05D006719 4.3e-100 368.6 289 72.3
Sabra01G0050700 Salix brachista HOM05D005498 ORTHO05D006719 4.3e-100 368.6 317 71.6
Phvul.003G001500 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 5.6e-100 368.2 290 73.1
TWI75G1441 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 7.4e-100 367.9 289 72.0
CDE11G0700 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 1.3e-99 367.1 268 78.0
AUR62037729 Chenopodium quinoa HOM05D005498 ORTHO05D006719 2.8e-99 365.9 289 77.2
Potri.001G072100 Populus trichocarpa HOM05D005498 ORTHO05D006719 3.7e-99 365.5 289 73.7
Glyma.10G123200 Glycine max HOM05D005498 ORTHO05D006719 6.2e-99 364.8 289 72.3
LjContig00470g0019612 Lotus japonicus HOM05D005498 ORTHO05D006719 6.2e-99 364.8 289 72.7
PSO017G5587 Papaver somniferum HOM05D005498 ORTHO05D006719 4.0e-98 362.1 291 72.2
PSO478G3668 Papaver somniferum HOM05D005498 ORTHO05D006719 4.0e-98 362.1 268 77.2
VMungo0251G3521 Vigna mungo HOM05D005498 ORTHO05D006719 4.0e-98 362.1 288 74.3
Ca_04134_v3 Cicer arietinum L. HOM05D005498 ORTHO05D006719 1.5e-97 360.1 287 73.2
Lalb_Chr21g0307771 Lupinus albus HOM05D005498 ORTHO05D006719 2.6e-97 359.4 291 73.5
THA.LOC104820204 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 3.4e-97 359.0 287 69.3
ECA246G1673 Erigeron canadensis HOM05D005498 ORTHO05D006719 4.5e-97 358.6 276 72.1
Psat1g052840 Pisum sativum HOM05D005498 ORTHO05D006719 5.8e-97 358.2 290 74.1
Os02g0234800 Oryza sativa ssp. japonica HOM05D005498 ORTHO05D006719 1.7e-96 356.7 289 72.3
ATR0582G093 Amborella trichopoda HOM05D005498 ORTHO05D006719 2.9e-96 355.9 289 70.6
HanXRQChr05g0154501 Helianthus annuus HOM05D005498 ORTHO05D006719 2.5e-95 352.8 276 71.7
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 4.2e-95 352.1 241 81.7
Medtr6g004180 Medicago truncatula HOM05D005498 ORTHO05D006719 2.1e-94 349.7 289 70.2
Lsat_1_v5_gn_5_9301 Lactuca sativa HOM05D005498 ORTHO05D006719 1.3e-93 347.1 277 70.8
TPR.G25230 Trifolium pratense HOM05D005498 ORTHO05D006719 1.8e-93 346.7 290 70.3
HanXRQChr06g0174511 Helianthus annuus HOM05D005498 ORTHO05D006719 1.9e-92 343.2 276 71.0
Lalb_Chr02g0144691 Lupinus albus HOM05D005498 ORTHO05D006719 1.9e-92 343.2 289 70.2
CSS0017542 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 1.3e-91 340.5 263 79.1
Zm00001eb064600 Zea mays HOM05D005498 ORTHO05D006719 2.2e-91 339.7 288 71.2
AL1G20310 Arabidopsis lyrata HOM05D005498 ORTHO05D006719 1.8e-90 336.7 256 72.3
MELO3C022370.2 Cucumis melo HOM05D005498 ORTHO05D006719 1.8e-90 336.7 292 66.8
Sc04g0000070 Simmondsia chinensis HOM05D005498 ORTHO05D006719 4.1e-90 335.5 260 74.2
THA.LOC104823693 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 4.1e-90 335.5 276 68.1
Carub.0001s0910 Capsella rubella HOM05D005498 ORTHO05D006719 1.0e-88 330.9 244 73.4
Atru.chr12.1486 Acer truncatum HOM05D005498 ORTHO05D006719 1.7e-88 330.1 289 68.2
A09p65320 Brassica napus HOM05D005498 ORTHO05D006719 1.7e-88 330.1 249 74.7
CARHR009720 Cardamine hirsuta HOM05D005498 ORTHO05D006719 3.8e-88 328.9 256 69.9
CSS0028024 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 6.5e-88 328.2 288 67.7
BraA08t35348Z Brassica rapa HOM05D005498 ORTHO05D006719 8.5e-88 327.8 249 71.5
Thhalv10008494m.g Eutrema salsugineum HOM05D005498 ORTHO05D006719 1.1e-87 327.4 274 67.9
AT1G09760 Arabidopsis thaliana HOM05D005498 ORTHO05D006719 1.9e-87 326.6 256 71.1
COL.COLO4_24568 Corchorus olitorius HOM05D005498 ORTHO05D006719 1.9e-87 326.6 287 69.3
A08p34360 Brassica napus HOM05D005498 ORTHO05D006719 2.5e-87 326.2 249 71.5
BraA09t41876Z Brassica rapa HOM05D005498 ORTHO05D006719 2.5e-87 326.2 249 73.9
C08p13170 Brassica napus HOM05D005498 ORTHO05D006719 3.2e-87 325.9 249 71.5
BolC8t48946H Brassica oleracea HOM05D005498 ORTHO05D006719 3.2e-87 325.9 249 71.5
C08p49270 Brassica napus HOM05D005498 ORTHO05D006719 7.2e-87 324.7 249 73.5
BolC8t52462H Brassica oleracea HOM05D005498 ORTHO05D006719 1.6e-86 323.6 249 73.1
SalBow7G1334 Salvia bowleyana HOM05D005498 ORTHO05D006719 1.6e-86 323.6 269 73.2
A06p06430 Brassica napus HOM05D005498 ORTHO05D006719 2.1e-86 323.2 262 71.0
BraA06t23854Z Brassica rapa HOM05D005498 ORTHO05D006719 2.1e-86 323.2 262 71.0
C05p07830 Brassica napus HOM05D005498 ORTHO05D006719 6.1e-86 321.6 262 70.6
BolC5t29534H Brassica oleracea HOM05D005498 ORTHO05D006719 6.1e-86 321.6 262 70.6
BcaC07g41860 Brassica carinata HOM05D005498 ORTHO05D006719 1.4e-85 320.5 249 73.1
Sp1g08350 Schrenkiella parvula HOM05D005498 ORTHO05D006719 5.7e-84 315.1 274 66.4
Sc04g0000010 Simmondsia chinensis HOM05D005498 ORTHO05D006719 1.8e-82 310.1 246 73.2
Aa31LG1G5230 Aethionema arabicum HOM05D005498 ORTHO05D006719 2.4e-82 309.7 245 69.8
Hund15317 Selenicereus undatus HOM05D005498 ORTHO05D006719 9.1e-82 307.8 260 69.2
Mapoly0014s0064 Marchantia polymorpha HOM05D005498 ORTHO05D006719 5.9e-81 305.1 290 63.4
AUR62020276 Chenopodium quinoa HOM05D005498 ORTHO05D006719 2.7e-78 296.2 211 82.0
Actinidia08921 Actinidia chinensis HOM05D005498 ORTHO05D006719 8.2e-75 284.6 205 79.5
Pp3c20_1630 Physcomitrium patens HOM05D005498 ORTHO05D006719 7.0e-74 281.6 292 59.9
Pp3c23_20060 Physcomitrium patens HOM05D005498 ORTHO05D006719 2.9e-72 276.2 279 62.7
Pp3c8_21390 Physcomitrium patens HOM05D005498 ORTHO05D006719 2.9e-72 276.2 254 63.8
Peaxi162Scf00314g00830 Petunia axillaris HOM05D005498 ORTHO05D006719 1.6e-70 270.4 229 69.9
Cpa.g.sc2660.1 Carica papaya HOM05D005498 ORTHO05D006719 4.4e-68 262.3 153 90.8
Ah.10g024870 Amaranthus hybridus HOM05D005498 ORTHO05D006719 4.8e-67 258.8 153 90.8
unitig_8.g3047 Utricularia gibba HOM05D005498 ORTHO05D006719 7.2e-63 245.0 290 54.5
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 3.4e-52 209.5 271 47.2
AagrBONN_evm.TU.Sc2ySwM_362.2343 Anthoceros agrestis HOM05D005498 ORTHO05D006719 1.1e-50 204.5 206 54.4
Gorai.007G212800 Gossypium raimondii HOM05D005498 ORTHO05D006719 7.0e-50 201.8 170 63.5
Phvul.009G235000 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 1.0e-48 198.0 187 65.2
DCAR_021388 Daucus carota HOM05D005498 ORTHO05D006719 2.3e-48 196.8 125 81.6
Oeu027824.1 Olea europaea HOM05D005498 ORTHO05D006719 6.6e-48 195.3 289 47.1
SMO203G0044 Selaginella moellendorffii HOM05D005498 ORTHO05D006719 3.3e-47 193.0 153 71.2
Gorai.006G052400 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.5e-44 184.1 153 66.0
Gohir.D11G198700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 9.5e-39 164.9 170 56.5
Gohir.D13G071700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.2e-36 157.9 170 54.1
Gohir.D13G083750 Gossypium hirsutum HOM05D005498 ORTHO05D006719 4.4e-36 156.0 181 51.9
PRCOL_00001779 Prasinoderma coloniale HOM05D005498 ORTHO05D006719 4.3e-31 139.4 245 38.0
Gorai.010G065400 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.4e-29 134.4 105 64.8
Ah.10g024860 Amaranthus hybridus HOM05D005498 ORTHO05D006719 4.0e-29 132.9 136 62.5
FAN12G0959 Fragaria x ananassa HOM05D005498 ORTHO05D006719 2.6e-28 130.2 67 91.0
Cpa.g.sc38.27 Carica papaya HOM05D005498 ORTHO05D006719 5.1e-24 115.9 142 56.3
RcHm_v2.0_Chr4g0427471 Rosa chinensis HOM05D000753 ORTHO05D006719 1.8e-21 107.5 137 56.9
MELO3C026686.2 Cucumis melo HOM05D005498 ORTHO05D006719 8.6e-16 88.6 105 56.2
arahy.Tifrunner.gnm1.ann1.UV1K7Q Arachis hypogaea HOM05D005498 ORTHO05D006719 1.5e-15 87.8 73 58.9
PSO591G0416 Papaver somniferum HOM05D005498 ORTHO05D006719 1.4e-13 81.3 71 66.2
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 8.4e-11 72.0 42 78.6
CBR_g3778 Chara braunii HOM05D005498 ORTHO05D006719 1.3e-06 58.2 40 70.0
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 4.8e-06 56.2 172 28.5
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 4.8e-06 56.2 77 54.5


User provided reference genes

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