Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1867.8 959 100.0
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1649.8 961 88.6
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 0.0e+00 1629.8 963 87.0
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1624.8 961 87.1
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 0.0e+00 1617.1 915 87.0
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1610.9 962 84.3
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 0.0e+00 1607.0 963 84.9
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 0.0e+00 1605.5 961 84.2
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 0.0e+00 1598.6 917 86.5
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 0.0e+00 1594.3 963 83.9
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 0.0e+00 1590.1 915 84.6
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1589.7 962 83.7
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1586.6 969 85.1
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 0.0e+00 1584.7 987 82.4
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 0.0e+00 1582.4 962 83.9
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1580.8 961 84.3
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1580.1 961 84.1
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1578.9 963 83.8
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1578.9 959 82.7
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1578.9 961 82.5
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 0.0e+00 1577.8 962 83.0
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1577.8 963 83.5
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1575.8 963 83.4
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1575.8 966 83.2
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1575.5 963 84.0
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 0.0e+00 1574.7 960 84.1
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1573.9 964 83.2
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1573.9 963 83.5
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1573.5 961 83.6
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1573.5 961 82.1
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 0.0e+00 1572.4 964 83.0
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 0.0e+00 1571.6 969 82.7
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1571.2 961 81.2
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1571.2 978 82.2
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 0.0e+00 1571.2 963 82.5
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1570.8 961 83.1
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1570.8 964 83.2
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 0.0e+00 1569.7 966 83.2
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1567.0 971 82.0
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1565.1 963 81.9
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 0.0e+00 1564.7 915 83.7
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1564.3 963 83.2
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1563.9 961 82.5
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1563.9 960 82.0
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1563.9 964 82.7
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 0.0e+00 1560.8 966 82.7
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 0.0e+00 1560.0 963 81.3
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 0.0e+00 1559.3 962 82.0
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1558.9 962 82.3
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1558.1 964 81.2
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1557.7 961 82.4
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 0.0e+00 1556.6 962 81.8
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 0.0e+00 1555.0 962 81.3
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1550.8 962 81.1
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1550.8 959 81.2
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1550.4 962 82.2
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 0.0e+00 1547.3 963 81.3
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 0.0e+00 1547.3 1185 70.8
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 0.0e+00 1544.6 963 81.1
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 0.0e+00 1544.3 965 80.5
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1542.3 961 81.1
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1541.2 984 80.5
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 0.0e+00 1538.9 962 80.6
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 0.0e+00 1538.5 960 81.0
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 0.0e+00 1536.9 962 81.0
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1536.5 916 82.6
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1536.5 962 81.3
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1534.2 965 81.5
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1534.2 964 81.4
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1533.5 962 82.4
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1533.5 955 82.4
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 0.0e+00 1527.7 968 81.7
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1522.3 923 80.2
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1521.5 962 80.4
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1510.4 969 80.4
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1501.5 969 78.6
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 0.0e+00 1495.7 958 79.4
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 0.0e+00 1494.6 922 81.3
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1492.6 991 75.8
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 0.0e+00 1488.4 960 79.4
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 0.0e+00 1486.5 964 78.7
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1478.0 831 87.6
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1474.5 967 77.1
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 0.0e+00 1471.4 961 78.8
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1471.4 967 78.3
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1471.1 909 82.5
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 0.0e+00 1469.1 842 84.9
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 0.0e+00 1465.7 972 77.6
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1463.4 985 76.9
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 0.0e+00 1463.0 974 76.6
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1457.2 986 76.9
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 0.0e+00 1457.2 986 76.9
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 0.0e+00 1452.2 971 76.8
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 0.0e+00 1443.3 970 76.4
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 0.0e+00 1441.8 964 74.9
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 0.0e+00 1441.0 980 76.2
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 0.0e+00 1432.9 966 75.3
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1431.0 964 76.1
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 0.0e+00 1428.3 983 75.7
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 0.0e+00 1427.2 961 73.9
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 0.0e+00 1421.8 964 75.3
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1418.7 969 75.3
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 0.0e+00 1404.4 930 74.9
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1399.8 961 73.5
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1399.4 726 95.6
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 0.0e+00 1397.9 961 71.6
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1379.4 921 75.2
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 0.0e+00 1358.6 902 74.8
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1348.6 913 71.7
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1338.6 784 84.8
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 0.0e+00 1334.3 786 84.2
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 0.0e+00 1330.1 962 69.4
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 0.0e+00 1244.2 924 66.2
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1236.1 982 67.7
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1219.1 785 74.6
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1214.1 690 87.5
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 0.0e+00 1159.8 993 60.8
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 0.0e+00 1140.2 986 58.9
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 0.0e+00 1139.4 959 63.4
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 0.0e+00 1119.8 724 79.7
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 0.0e+00 1117.4 971 59.4
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 3.4e-303 1045.0 664 79.5
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.3e-286 989.9 787 61.0
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 2.0e-282 976.1 673 75.8
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 6.5e-278 961.1 594 81.5
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 9.5e-261 904.0 562 80.4
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 2.5e-245 852.8 525 80.6
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 7.3e-237 824.7 600 71.3
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 3.4e-218 762.7 441 87.8
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 4.2e-216 755.7 502 74.9
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 6.1e-191 672.2 386 84.7
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.4e-187 661.0 408 83.8
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 1.3e-180 637.9 1036 38.4
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 9.5e-152 542.0 415 64.3
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 1.7e-145 521.2 416 61.1
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 1.4e-142 511.5 824 38.3
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 2.3e-126 457.6 480 54.6
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 3.3e-120 437.2 253 82.2
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 2.8e-119 434.1 223 91.9
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 4.8e-111 406.8 1056 28.5
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 4.6e-106 390.2 279 68.1
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 3.3e-104 384.0 849 32.6
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 6.9e-94 349.7 251 71.3
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 1.5e-93 348.6 253 66.4
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 1.5e-93 348.6 253 66.4
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 1.9e-88 331.6 365 44.9
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 5.5e-83 313.5 286 59.1
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 7.0e-62 243.4 148 77.0
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 7.2e-51 206.8 174 51.7
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 9.4e-51 206.5 149 63.8
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 9.4e-51 206.5 149 63.8
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 1.7e-47 195.7 139 64.7
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 3.5e-45 188.0 118 75.4
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 2.9e-44 184.9 103 85.4
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 2.5e-43 181.8 170 53.5
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 2.1e-42 178.7 243 46.9
CSS0019611 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D019539 3.6e-42 177.9 130 83.1
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 8.3e-39 166.8 99 78.8
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 9.2e-38 163.3 141 48.9
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 6.6e-36 157.1 76 94.7
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.9e-35 155.6 76 93.4
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.5e-35 155.2 75 96.0
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 9.5e-35 153.3 131 64.9
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.2e-34 152.9 76 92.1
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 1.2e-34 152.9 111 69.4
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.8e-33 149.1 78 88.5
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.3e-33 148.7 74 93.2
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 4.0e-33 147.9 88 81.8
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 5.2e-33 147.5 98 74.5
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 1.7e-31 142.5 138 51.4
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 2.4e-30 138.7 122 59.0
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 6.6e-28 130.6 78 80.8
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 4.3e-27 127.9 65 92.3
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 5.2e-25 120.9 99 56.6
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 1.7e-23 115.9 130 51.5
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 3.2e-22 111.7 129 46.5
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 8.1e-18 97.1 268 27.2
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 5.8e-16 90.9 82 56.1
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 5.4e-14 84.3 56 71.4
Pp3c9_21930 Physcomitrium patens HOM05D003791 ORTHO05D308914 2.8e-10 72.0 189 29.6
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 8.1e-10 70.5 46 60.9
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 7.6e-08 63.9 42 66.7
HanXRQChr15g0465621 Helianthus annuus HOM05D003791 ORTHO05D019539 9.2e-06 57.0 56 46.4


User provided reference genes

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