Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010977 Camellia sinensis var. sinensis HOM05D002785 ORTHO05D003042 4.4e-228 794.3 398 100.0
CSS0001492 Camellia sinensis var. sinensis HOM05D002785 ORTHO05D003042 1.5e-223 779.2 398 97.0
Actinidia11979 Actinidia chinensis HOM05D002785 ORTHO05D003042 8.8e-136 487.6 401 65.3
Dinv04045 Davidia involucrata HOM05D002785 ORTHO05D003042 1.6e-129 466.8 410 63.4
RhsimUnG0150400 Rhododendron simsii HOM05D002785 ORTHO05D003042 6.3e-126 454.9 396 60.6
vmacro05412 Vaccinium macrocarpon HOM05D002785 ORTHO05D003042 1.8e-117 426.8 398 59.8
TAR628G1592 Trochodendron aralioides HOM05D002785 ORTHO05D003042 5.6e-98 362.1 404 50.2
QL06p039535 Quercus lobata HOM05D002785 ORTHO05D003042 9.5e-98 361.3 415 51.8
Haze_15279 Corylus avellana HOM05D002785 ORTHO05D003042 3.1e-96 356.3 413 50.1
Cfa004135 Carpinus fangiana HOM05D002785 ORTHO05D003042 5.8e-95 352.1 414 49.8
Ciclev10027042m.g Citrus clementina HOM05D002785 ORTHO05D003042 3.7e-94 349.4 416 49.8
Hma1.2p1_0852F.1_g228550 Hydrangea macrophylla HOM05D002785 ORTHO05D003042 8.3e-94 348.2 342 56.7
Atru.chr3.1018 Acer truncatum HOM05D002785 ORTHO05D003042 1.4e-88 330.9 394 48.2
Sabra07G0003500 Salix brachista HOM05D002785 ORTHO05D003042 4.4e-87 325.9 415 46.0
Thecc.01G073100 Theobroma cacao HOM05D002785 ORTHO05D003042 4.4e-87 325.9 429 46.4
MD02G1186800 Malus domestica HOM05D002785 ORTHO05D003042 7.6e-87 325.1 403 47.6
Prupe.6G219900 Prunus persica HOM05D002785 ORTHO05D003042 9.9e-87 324.7 384 49.2
FAN23G1279 Fragaria x ananassa HOM05D002785 ORTHO05D003042 9.2e-85 318.2 402 45.0
Gohir.A11G214500 Gossypium hirsutum HOM05D002785 ORTHO05D003042 1.2e-84 317.8 423 46.8
Duzib147G0765 Durio zibethinus HOM05D002785 ORTHO05D003042 7.8e-84 315.1 416 47.8
GSVIVG01004304001 Vitis vinifera HOM05D002785 ORTHO05D003042 7.8e-84 315.1 386 50.5
Potri.007G004900 Populus trichocarpa HOM05D002785 ORTHO05D003042 1.0e-83 314.7 401 46.9
FvH4_1g17780 Fragaria vesca HOM05D002785 ORTHO05D003042 1.5e-82 310.8 403 45.9
RcHm_v2.0_Chr2g0108231 Rosa chinensis HOM05D002785 ORTHO05D003042 1.5e-82 310.8 409 44.5
Gorai.007G224000 Gossypium raimondii HOM05D002785 ORTHO05D003042 1.9e-82 310.5 423 46.1
COL.COLO4_11581 Corchorus olitorius HOM05D002785 ORTHO05D003042 4.3e-82 309.3 411 45.5
Gohir.D11G208900 Gossypium hirsutum HOM05D002785 ORTHO05D003042 7.3e-82 308.5 423 46.1
FAN19G3227 Fragaria x ananassa HOM05D002785 ORTHO05D003042 1.6e-81 307.4 403 45.4
Nn5g30601 Nelumbo nucifera HOM05D002785 ORTHO05D003042 2.1e-81 307.0 420 44.0
Phvul.003G234700 Phaseolus vulgaris HOM05D002785 ORTHO05D003042 8.1e-81 305.1 404 46.3
CsaV3_6G044150 Cucumis sativus L. HOM05D002785 ORTHO05D003042 1.4e-80 304.3 390 46.2
CiPaw.02G002000 Carya illinoinensis HOM05D002785 ORTHO05D003042 5.2e-80 302.4 414 46.4
ClCG01G017610 Citrullus lanatus HOM05D002785 ORTHO05D003042 8.9e-80 301.6 392 47.4
Lj4g0009360 Lotus japonicus HOM05D002785 ORTHO05D003042 8.9e-80 301.6 412 44.9
VMungo0251G0681 Vigna mungo HOM05D002785 ORTHO05D003042 8.9e-80 301.6 407 45.9
Glyma.05G105933 Glycine max HOM05D002785 ORTHO05D003042 1.2e-79 301.2 393 47.1
PSO017G1191 Papaver somniferum HOM05D002785 ORTHO05D003042 2.0e-79 300.4 398 44.7
MELO3C007638.2 Cucumis melo HOM05D002785 ORTHO05D003042 3.4e-79 299.7 391 45.3
PSO170G3422 Papaver somniferum HOM05D002785 ORTHO05D003042 5.8e-79 298.9 398 44.5
Glyma.17G160600 Glycine max HOM05D002785 ORTHO05D003042 1.7e-78 297.4 397 45.8
Solyc02g092310.4 Solanum lycopersicum HOM05D002785 ORTHO05D003042 2.9e-78 296.6 398 42.7
Nitab4.5_0004025g0050 Nicotiana tabacum HOM05D002785 ORTHO05D003042 8.4e-78 295.0 405 44.0
Sed0017824 Sechium edule HOM05D002785 ORTHO05D003042 8.4e-78 295.0 392 46.4
Sopen02g036880 Solanum pennellii HOM05D002785 ORTHO05D003042 1.9e-77 293.9 399 43.1
Lj7A99T39 Lonicera japonica HOM05D002785 ORTHO05D003042 7.1e-77 292.0 272 58.5
FAN28G1616 Fragaria x ananassa HOM05D002785 ORTHO05D003042 1.6e-76 290.8 279 53.4
Ca_22104_v3 Cicer arietinum L. HOM05D002785 ORTHO05D003042 2.1e-76 290.4 402 43.5
Manes.13G111300 Manihot esculenta HOM05D002785 ORTHO05D003042 2.7e-76 290.0 409 42.8
Cc07_g07130 Coffea canephora HOM05D002785 ORTHO05D003042 4.6e-76 289.3 407 43.5
Nitab4.5_0000142g0100 Nicotiana tabacum HOM05D002785 ORTHO05D003042 1.7e-75 287.3 404 43.6
PGSC0003DMG400021442 Solanum tuberosum HOM05D002785 ORTHO05D003042 3.0e-75 286.6 397 42.1
HanXRQChr12g0373011 Helianthus annuus HOM05D002785 ORTHO05D003042 5.1e-75 285.8 400 45.5
Aqoxy5G00864 Aquilegia oxysepala HOM05D002785 ORTHO05D003042 1.1e-74 284.6 395 42.8
Lalb_Chr05g0225851 Lupinus albus HOM05D002785 ORTHO05D003042 2.5e-74 283.5 240 61.7
CAN.G1075.41 Capsicum annuum HOM05D002785 ORTHO05D003042 7.3e-74 282.0 397 43.1
ECA232G4547 Erigeron canadensis HOM05D002785 ORTHO05D003042 9.6e-74 281.6 399 44.4
Medtr4g097120 Medicago truncatula HOM05D002785 ORTHO05D003042 3.6e-73 279.6 406 43.1
Lalb_Chr04g0261651 Lupinus albus HOM05D002785 ORTHO05D003042 1.4e-72 277.7 395 44.6
TPR.G24212 Trifolium pratense HOM05D002785 ORTHO05D003042 6.9e-72 275.4 394 42.6
arahy.Tifrunner.gnm1.ann1.3N2T9Z Arachis hypogaea HOM05D002785 ORTHO05D003042 1.2e-71 274.6 393 43.5
arahy.Tifrunner.gnm1.ann1.DHZ284 Arachis hypogaea HOM05D002785 ORTHO05D003042 1.2e-71 274.6 396 44.2
Eucgr.H02309 Eucalyptus grandis HOM05D002785 ORTHO05D003042 1.5e-71 274.2 407 42.5
Hund16403 Selenicereus undatus HOM05D002785 ORTHO05D003042 2.0e-71 273.9 391 40.2
DCAR_027182 Daucus carota HOM05D002785 ORTHO05D003042 3.4e-71 273.1 418 41.4
SGA_v2.0_scaffold15G07462 Striga asiatica HOM05D002785 ORTHO05D003042 6.4e-70 268.9 385 44.2
EL10Ac6g15614 Beta vulgaris HOM05D002785 ORTHO05D003042 1.9e-69 267.3 391 41.4
ATR1153G029 Amborella trichopoda HOM05D002785 ORTHO05D003042 2.4e-69 266.9 385 42.9
ECA232G0485 Erigeron canadensis HOM05D002785 ORTHO05D003042 4.2e-69 266.2 390 43.6
Peaxi162Scf00548g00537 Petunia axillaris HOM05D002785 ORTHO05D003042 7.1e-69 265.4 302 49.0
THA.LOC104821203 Tarenaya hassleriana HOM05D002785 ORTHO05D003042 9.3e-69 265.0 387 41.1
Sc03g0002420 Simmondsia chinensis HOM05D002785 ORTHO05D003042 2.3e-67 260.4 389 43.2
Lsat_1_v5_gn_4_161581 Lactuca sativa HOM05D002785 ORTHO05D003042 1.5e-66 257.7 302 48.3
C03p59620 Brassica napus HOM05D002785 ORTHO05D003042 8.1e-65 251.9 253 50.6
PGR102G1548 Punica granatum HOM05D002785 ORTHO05D003042 1.5e-63 247.7 244 55.7
Psat4g081600 Pisum sativum HOM05D002785 ORTHO05D003042 3.4e-63 246.5 299 47.5
CARHR280020 Cardamine hirsuta HOM05D002785 ORTHO05D003042 4.5e-63 246.1 283 47.7
Sp2g29080 Schrenkiella parvula HOM05D002785 ORTHO05D003042 1.3e-62 244.6 281 47.7
AT5G67570 Arabidopsis thaliana HOM05D002785 ORTHO05D003042 1.7e-62 244.2 231 54.1
BcaB02g09912 Brassica carinata HOM05D002785 ORTHO05D003042 2.9e-62 243.4 282 46.5
Carub.0008s2690 Capsella rubella HOM05D002785 ORTHO05D003042 2.9e-62 243.4 231 53.2
BcaNung05861 Brassica carinata HOM05D002785 ORTHO05D003042 8.4e-62 241.9 280 46.4
AL8G43730 Arabidopsis lyrata HOM05D002785 ORTHO05D003042 1.1e-61 241.5 230 53.5
A06p32850 Brassica napus HOM05D002785 ORTHO05D003042 2.4e-61 240.4 279 46.6
BraA06t26217Z Brassica rapa HOM05D002785 ORTHO05D003042 2.4e-61 240.4 279 46.6
HPP92_024499 Vanilla planifolia HOM05D002785 ORTHO05D003042 1.2e-60 238.0 228 52.2
Migut.H00344 Erythranthe guttata HOM05D002785 ORTHO05D003042 3.5e-60 236.5 284 47.5
Thhalv10003664m.g Eutrema salsugineum HOM05D002785 ORTHO05D003042 5.6e-58 229.2 245 47.8
CDE06G2475 Ceratophyllum demersum HOM05D002785 ORTHO05D003042 6.5e-54 215.7 387 37.5
Aa31LG1G16120 Aethionema arabicum HOM05D002785 ORTHO05D003042 9.3e-53 211.8 280 42.5
SalBow3G1040 Salvia bowleyana HOM05D002785 ORTHO05D003042 1.4e-48 198.0 282 43.3
Zm00001eb065550 Zea mays HOM05D002785 ORTHO05D003042 1.3e-46 191.4 289 40.1
FvH4_1g17891 Fragaria vesca HOM05D002785 ORTHO05D003042 1.7e-46 191.0 270 44.4
SEGI_12126 Sequoiadendron giganteum HOM05D002785 ORTHO05D003042 5.0e-46 189.5 389 30.6
unitig_0.g501 Utricularia gibba HOM05D002785 ORTHO05D003042 1.9e-45 187.6 184 54.9
SEGI_41190 Sequoiadendron giganteum HOM05D002785 ORTHO05D003042 5.9e-39 166.0 207 41.5
TWI63G0524 Tripterygium wilfordii HOM05D002785 ORTHO05D003042 4.4e-26 123.2 228 29.8
ATR0165G017 Amborella trichopoda HOM05D002785 ORTHO05D003042 1.4e-24 118.2 205 36.1
Atru.chr3.2242 Acer truncatum HOM05D002785 ORTHO05D003042 1.0e-22 112.1 238 31.5
CANSAT35G1290 Cannabis sativa HOM05D002785 ORTHO05D003042 1.9e-21 107.8 238 30.3
Migut.M01943 Erythranthe guttata HOM05D002785 ORTHO05D003042 3.2e-21 107.1 201 32.3
Nn3g20311 Nelumbo nucifera HOM05D002785 ORTHO05D003042 1.6e-20 104.8 204 29.4
PSO675G7541 Papaver somniferum HOM05D002785 ORTHO05D003042 2.3e-19 100.9 209 29.2
Os01g0674700 Oryza sativa ssp. japonica HOM05D002785 ORTHO05D003042 4.0e-19 100.1 210 30.5
vmacro03460 Vaccinium macrocarpon HOM05D002785 ORTHO05D003042 5.2e-19 99.8 203 29.6
GSVIVG01021752001 Vitis vinifera HOM05D002785 ORTHO05D003042 8.8e-19 99.0 258 27.5
PSO675G2450 Papaver somniferum HOM05D002785 ORTHO05D003042 1.1e-18 98.6 209 28.2
arahy.Tifrunner.gnm1.ann1.NB2J4N Arachis hypogaea HOM05D002785 ORTHO05D003042 1.5e-18 98.2 208 28.4
DCAR_007810 Daucus carota HOM05D002785 ORTHO05D003042 2.0e-18 97.8 208 27.4
MD05G1264100 Malus domestica HOM05D002785 ORTHO05D003042 2.6e-18 97.4 204 27.9
Mapoly0090s0080 Marchantia polymorpha HOM05D002785 ORTHO05D003042 4.4e-18 96.7 230 28.3
THA.LOC104812694 Tarenaya hassleriana HOM05D002785 ORTHO05D003042 4.4e-18 96.7 238 26.5
Sed0027329 Sechium edule HOM05D002785 ORTHO05D003042 5.7e-18 96.3 234 26.9
ClCG01G008850 Citrullus lanatus HOM05D002785 ORTHO05D003042 7.5e-18 95.9 234 26.9
Carub.0001s2887 Capsella rubella HOM05D002785 ORTHO05D003042 2.2e-17 94.4 232 27.2
AUR62017862 Chenopodium quinoa HOM05D002785 ORTHO05D003042 2.2e-17 94.4 229 26.6
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 2.8e-17 94.0 213 26.3
arahy.Tifrunner.gnm1.ann1.WQB6IM Arachis hypogaea HOM05D002785 ORTHO05D003042 2.8e-17 94.0 208 27.9
Ciclev10014133m.g Citrus clementina HOM05D002785 ORTHO05D003042 2.8e-17 94.0 241 24.9
SalBow8G1087 Salvia bowleyana HOM05D002785 ORTHO05D003042 2.8e-17 94.0 201 28.9
SalBow8G2824 Salvia bowleyana HOM05D002785 ORTHO05D003042 2.8e-17 94.0 201 28.9
HPP92_013191 Vanilla planifolia HOM05D002785 ORTHO05D003042 2.8e-17 94.0 206 29.6
Ca_10009_v3 Cicer arietinum L. HOM05D002785 ORTHO05D003042 3.7e-17 93.6 169 33.1
QL05p064786 Quercus lobata HOM05D002785 ORTHO05D003042 3.7e-17 93.6 232 27.2
Sp1g26510 Schrenkiella parvula HOM05D002785 ORTHO05D003042 4.8e-17 93.2 159 31.4
CsaV3_1G037710 Cucumis sativus L. HOM05D002785 ORTHO05D003042 1.1e-16 92.0 227 25.6
MBI18_g27150_MAGBIO Magnolia biondii HOM05D002785 ORTHO05D003042 1.1e-16 92.0 241 29.9
EL10Ac6g15330 Beta vulgaris HOM05D002785 ORTHO05D003042 1.8e-16 91.3 206 25.7
Rhsim13G0125900 Rhododendron simsii HOM05D002785 ORTHO05D003042 3.1e-16 90.5 205 29.8
AT1G30610 Arabidopsis thaliana HOM05D002785 ORTHO05D003042 5.3e-16 89.7 181 29.3
C05p29670 Brassica napus HOM05D002785 ORTHO05D003042 5.3e-16 89.7 229 27.5
BolC5t31696H Brassica oleracea HOM05D002785 ORTHO05D003042 5.3e-16 89.7 229 27.5
CARHR030050 Cardamine hirsuta HOM05D002785 ORTHO05D003042 5.3e-16 89.7 159 31.4
CiPaw.10G110800 Carya illinoinensis HOM05D002785 ORTHO05D003042 5.3e-16 89.7 233 26.6
Dinv05937 Davidia involucrata HOM05D002785 ORTHO05D003042 5.3e-16 89.7 167 31.7
Thhalv10006701m.g Eutrema salsugineum HOM05D002785 ORTHO05D003042 5.3e-16 89.7 160 30.6
Manes.14G126700 Manihot esculenta HOM05D002785 ORTHO05D003042 5.3e-16 89.7 203 26.6
FAN21G2235 Fragaria x ananassa HOM05D002785 ORTHO05D003042 9.1e-16 89.0 205 26.8
AL1G44660 Arabidopsis lyrata HOM05D002785 ORTHO05D003042 1.2e-15 88.6 181 28.7
MELO3C021816.2 Cucumis melo HOM05D002785 ORTHO05D003042 1.6e-15 88.2 231 25.1
A09p35810 Brassica napus HOM05D002785 ORTHO05D003042 2.0e-15 87.8 229 27.1
BraA09t39104Z Brassica rapa HOM05D002785 ORTHO05D003042 2.0e-15 87.8 229 27.1
Medtr0001s0430 Medicago truncatula HOM05D002785 ORTHO05D003042 2.0e-15 87.8 170 30.6
TPR.G9829 Trifolium pratense HOM05D002785 ORTHO05D003042 3.5e-15 87.0 170 31.2
BcaNung05822 Brassica carinata HOM05D002785 ORTHO05D003042 4.5e-15 86.7 158 31.0
BcaB07g32701 Brassica carinata HOM05D002785 ORTHO05D003042 7.7e-15 85.9 159 30.2
Lj1C1157G2 Lonicera japonica HOM05D002785 ORTHO05D003042 7.7e-15 85.9 229 26.2
Sc02g0003170 Simmondsia chinensis HOM05D002785 ORTHO05D003042 7.7e-15 85.9 209 25.4
AUR62014930 Chenopodium quinoa HOM05D002785 ORTHO05D003042 2.2e-14 84.3 147 29.3
MSTRG.7571 Avicennia marina HOM05D002785 ORTHO05D003042 2.9e-14 84.0 205 26.3
SEGI_20519 Sequoiadendron giganteum HOM05D002785 ORTHO05D003042 6.5e-14 82.8 93 44.1
Lj3g0000529 Lotus japonicus HOM05D002785 ORTHO05D003042 1.1e-13 82.0 139 32.4
Lalb_Chr19g0140081 Lupinus albus HOM05D002785 ORTHO05D003042 1.9e-13 81.3 137 30.7
Peaxi162Scf00195g00522 Petunia axillaris HOM05D002785 ORTHO05D003042 7.2e-13 79.3 205 26.3
Pp3c10_24670 Physcomitrium patens HOM05D002785 ORTHO05D003042 1.6e-12 78.2 176 25.6
Pp3c10_24680 Physcomitrium patens HOM05D002785 ORTHO05D003042 1.6e-12 78.2 176 25.6
BcaC05g27084 Brassica carinata HOM05D002785 ORTHO05D003042 2.1e-12 77.8 132 33.3
Glyma.11G110600 Glycine max HOM05D002785 ORTHO05D003042 2.7e-12 77.4 212 23.6
Phvul.011G017600 Phaseolus vulgaris HOM05D002785 ORTHO05D003042 4.7e-12 76.6 154 27.9
Oeu008977.1 Olea europaea HOM05D002785 ORTHO05D003042 1.8e-11 74.7 146 27.4
Pp3c23_13490 Physcomitrium patens HOM05D002785 ORTHO05D003042 1.8e-11 74.7 194 23.7
Aa31LG6G11850 Aethionema arabicum HOM05D002785 ORTHO05D003042 2.3e-11 74.3 158 28.5
CSS0011878 Camellia sinensis var. sinensis HOM05D002785 ORTHO05D003042 3.0e-11 73.9 124 30.6
VMungo1127G0626 Vigna mungo HOM05D002785 ORTHO05D003042 4.0e-11 73.6 147 27.2
Aqoxy4G00056 Aquilegia oxysepala HOM05D002785 ORTHO05D003042 1.5e-10 71.6 253 23.7
BcaC01g04060 Brassica carinata HOM05D002785 ORTHO05D003042 2.0e-10 71.2 125 30.4
Sed0002443 Sechium edule HOM05D002785 ORTHO05D003042 4.4e-10 70.1 122 29.5
TAR624G1304 Trochodendron aralioides HOM05D002785 ORTHO05D003042 1.3e-09 68.6 229 23.1
CDE05G2152 Ceratophyllum demersum HOM05D002785 ORTHO05D003042 3.7e-09 67.0 140 27.1
C03p45510 Brassica napus HOM05D002785 ORTHO05D003042 4.8e-09 66.6 88 35.2
SGA_v2.0_scaffold298G47642 Striga asiatica HOM05D002785 ORTHO05D000003 4.8e-09 66.6 201 25.9
TAR624G1101 Trochodendron aralioides HOM05D002785 ORTHO05D003042 6.3e-09 66.2 229 23.1
ECA234G1849 Erigeron canadensis HOM05D002785 ORTHO05D003042 2.4e-08 64.3 204 22.5
Lsat_1_v5_gn_4_51020 Lactuca sativa HOM05D002785 ORTHO05D003042 3.1e-08 63.9 214 22.9
QL07p012105 Quercus lobata HOM05D002785 ORTHO05D000077 7.0e-08 62.8 186 24.7
PGR083G1445 Punica granatum HOM05D002785 ORTHO05D003042 4.5e-07 60.1 202 24.8
Potri.001G459900 Populus trichocarpa HOM05D002785 ORTHO05D003042 7.7e-07 59.3 203 21.7
HanXRQChr03g0090051 Helianthus annuus HOM05D002785 ORTHO05D003042 2.2e-06 57.8 235 22.1


User provided reference genes

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