Gene: AT1G30610

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G30610
  • Transcript Identifier AT1G30610.2
  • Gene Type Coding gene
  • Location Chr1 : 10846676-10850517 : positive

Gene Family Information

  • ID HOM05D002785
  • #Genes/#Species 248/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G30610.2
  • symbol EMB2279
  • Alias EMB88,EMBRYO DEFECTIVE 88
  • full_name EMBRYO DEFECTIVE 2279
  • uniprot Q9SA76

Descriptions

  • Description pentatricopeptide (PPR) repeat-containing protein
  • Computational description EMBRYO DEFECTIVE 2279 (EMB2279); INVOLVED IN: suspensor development, embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G67570.1); Has 17514 Blast hits to 7499 proteins in 222 species: Archae - 1; Bacteria - 12; Metazoa - 167; Fungi - 55; Plants - 16537; Viruses - 1; Other Eukaryotes - 741 (source: NCBI BLink).
  • Computational description EMBRYO DEFECTIVE 2279 (EMB2279); FUNCTIONS IN: binding; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G67570.1).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009658
IMP
IBA
IEA
Gene Ontologychloroplast organization1 2
GO:0009658
IEA
InterProchloroplast organization
GO:0009793
IMP
TAS, NAS
Gene Ontologyembryo development ending in seed dormancy3 4
GO:0010098
IMP
Gene Ontologysuspensor development
GO:0010239
IMP
Gene Ontologychloroplast mRNA processing2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IDA
Gene OntologymRNA binding5
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA
ISM, IBA
Gene Ontologychloroplast1 2
GO:0009536
IEA
GOA Databaseplastid

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002885 Pentatricopeptide repeat
IPR044645 Pentatricopeptide repeat-containing protein DG1/EMB2279-like
IPR011990 Tetratricopeptide-like helical domain superfamily
Mapman id Description
16.11.5.10 RNA processing.organelle machinery.post-transcriptional gene expression regulation.plastidial mRNA processing factor (SOT5)