Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010909 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 4.8e-31 137.1 65 100.0
CSS0000811 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 7.1e-27 123.2 65 92.3
CSS0021964 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 3.0e-25 117.9 88 70.5
CSS0015848 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 4.0e-22 107.5 52 96.2
CSS0020415 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 5.8e-21 103.6 52 92.3
CSS0031271 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 1.7e-20 102.1 65 81.5
Actinidia11670 Actinidia chinensis HOM05D003451 ORTHO05D003918 1.1e-19 99.4 58 82.8
CSS0003600 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 2.5e-19 98.2 49 95.9
CSS0013826 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 2.5e-19 98.2 58 82.8
CSS0014106 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 2.5e-19 98.2 49 95.9
vmacro04126 Vaccinium macrocarpon HOM05D003451 ORTHO05D003918 7.1e-19 96.7 58 81.0
SalBow6G3934 Salvia bowleyana HOM05D003451 ORTHO05D003918 1.2e-18 95.9 60 75.0
Nitab4.5_0000159g0090 Nicotiana tabacum HOM05D003451 ORTHO05D003918 3.5e-18 94.4 60 75.0
Nitab4.5_0000531g0010 Nicotiana tabacum HOM05D003451 ORTHO05D003918 3.5e-18 94.4 60 75.0
Actinidia06925 Actinidia chinensis HOM05D003451 ORTHO05D003918 4.6e-18 94.0 58 77.6
MSTRG.12458 Avicennia marina HOM05D003451 ORTHO05D003918 4.6e-18 94.0 58 77.6
Oeu001483.1 Olea europaea HOM05D003451 ORTHO05D003918 1.0e-17 92.8 58 79.3
Rhsim01G0192600 Rhododendron simsii HOM05D003451 ORTHO05D003918 3.9e-17 90.9 59 74.6
MSTRG.17605 Avicennia marina HOM05D003451 ORTHO05D003918 5.1e-17 90.5 58 74.1
Migut.D00628 Erythranthe guttata HOM05D003451 ORTHO05D003918 6.7e-17 90.1 58 75.9
Hma1.2p1_0390F.1_g142550 Hydrangea macrophylla HOM05D003451 ORTHO05D003918 6.7e-17 90.1 58 74.1
Solyc06g065470.4 Solanum lycopersicum HOM05D003451 ORTHO05D003918 8.7e-17 89.7 51 78.4
Nitab4.5_0003158g0010 Nicotiana tabacum HOM05D003451 ORTHO05D003918 1.1e-16 89.4 59 71.2
SalBow1G0548 Salvia bowleyana HOM05D003451 ORTHO05D003918 1.1e-16 89.4 57 73.7
SalBow1G0865 Salvia bowleyana HOM05D003451 ORTHO05D003918 1.1e-16 89.4 57 73.7
SalBow1G4695 Salvia bowleyana HOM05D003451 ORTHO05D003918 1.1e-16 89.4 57 73.7
Sopen06g023960 Solanum pennellii HOM05D003451 ORTHO05D003918 1.5e-16 89.0 51 78.4
PGSC0003DMG400026119 Solanum tuberosum HOM05D003451 ORTHO05D003918 1.5e-16 89.0 51 78.4
Peaxi162Scf00268g01431 Petunia axillaris HOM05D003451 ORTHO05D003918 2.5e-16 88.2 58 72.4
Migut.N02344 Erythranthe guttata HOM05D003451 ORTHO05D003918 4.3e-16 87.4 58 70.7
HanXRQChr13g0401231 Helianthus annuus HOM05D003451 ORTHO05D003918 4.3e-16 87.4 58 72.4
GSVIVG01026504001 Vitis vinifera HOM05D003451 ORTHO05D003918 4.3e-16 87.4 58 74.1
Nn7g36360 Nelumbo nucifera HOM05D003451 ORTHO05D003918 5.7e-16 87.0 58 74.1
SGA_v2.0_scaffold3G01477 Striga asiatica HOM05D003451 ORTHO05D003918 7.4e-16 86.7 59 69.5
DCAR_019964 Daucus carota HOM05D003451 ORTHO05D003918 9.6e-16 86.3 58 74.1
TAR369G0018 Trochodendron aralioides HOM05D003451 ORTHO05D003918 9.6e-16 86.3 58 74.1
unitig_699.g19138 Utricularia gibba HOM05D003451 ORTHO05D003918 1.6e-15 85.5 57 71.9
Cc01_g05030 Coffea canephora HOM05D003451 ORTHO05D003918 2.1e-15 85.1 58 70.7
HanXRQChr11g0351591 Helianthus annuus HOM05D003451 ORTHO05D003918 2.1e-15 85.1 58 70.7
Lsat_1_v5_gn_1_49181 Lactuca sativa HOM05D003451 ORTHO05D003918 2.8e-15 84.7 58 70.7
Lsat_1_v5_gn_6_25861 Lactuca sativa HOM05D003451 ORTHO05D003918 2.8e-15 84.7 58 69.0
Lj2A624G28 Lonicera japonica HOM05D003451 ORTHO05D003918 2.8e-15 84.7 58 70.7
Lj5C793G3 Lonicera japonica HOM05D003451 ORTHO05D003918 2.8e-15 84.7 58 70.7
unitig_27.g25002 Utricularia gibba HOM05D003451 ORTHO05D003918 3.7e-15 84.3 57 70.2
Dinv22160 Davidia involucrata HOM05D003451 ORTHO05D003918 6.3e-15 83.6 57 71.9
Dinv36234 Davidia involucrata HOM05D003451 ORTHO05D003918 6.3e-15 83.6 58 70.7
ECA233G6223 Erigeron canadensis HOM05D003451 ORTHO05D003918 6.3e-15 83.6 58 69.0
Nn2g15160 Nelumbo nucifera HOM05D003451 ORTHO05D003918 6.3e-15 83.6 58 67.2
TAR623G1024 Trochodendron aralioides HOM05D003451 ORTHO05D003918 6.3e-15 83.6 58 70.7
HPP92_003156 Vanilla planifolia HOM05D003451 ORTHO05D003918 6.3e-15 83.6 58 70.7
Lj7A514T32 Lonicera japonica HOM05D003451 ORTHO05D003918 1.1e-14 82.8 58 69.0
HanXRQChr01g0029351 Helianthus annuus HOM05D003451 ORTHO05D003918 2.4e-14 81.6 53 71.7
CDE09G0232 Ceratophyllum demersum HOM05D003451 ORTHO05D003918 3.1e-14 81.3 58 67.2
PSO541G4141 Papaver somniferum HOM05D003451 ORTHO05D003918 3.1e-14 81.3 58 69.0
PSO675G7264 Papaver somniferum HOM05D003451 ORTHO05D003918 3.1e-14 81.3 58 69.0
Sed0009927 Sechium edule HOM05D003451 ORTHO05D003918 5.3e-14 80.5 56 67.9
Sc09g0000810 Simmondsia chinensis HOM05D003451 ORTHO05D003918 5.3e-14 80.5 60 65.0
Os05g0140500 Oryza sativa ssp. japonica HOM05D003451 ORTHO05D003918 6.9e-14 80.1 58 67.2
Eucgr.J00743 Eucalyptus grandis HOM05D003451 ORTHO05D003918 1.2e-13 79.3 62 66.1
Rhsim13G0217600 Rhododendron simsii HOM05D006939 ORTHO05D008616 1.5e-13 79.0 48 79.2
THA.LOC104817916 Tarenaya hassleriana HOM05D003451 ORTHO05D003918 1.5e-13 79.0 60 65.0
PGR102G1026 Punica granatum HOM05D003451 ORTHO05D003918 2.6e-13 78.2 60 66.7
Aqoxy2G00229 Aquilegia oxysepala HOM05D003451 ORTHO05D003918 3.4e-13 77.8 58 62.1
ClCG03G013000 Citrullus lanatus HOM05D003451 ORTHO05D003918 3.4e-13 77.8 56 66.1
MELO3C015160.2 Cucumis melo HOM05D003451 ORTHO05D003918 3.4e-13 77.8 56 66.1
CsaV3_1G043070 Cucumis sativus L. HOM05D003451 ORTHO05D003918 3.4e-13 77.8 56 66.1
Gohir.A09G110960 Gossypium hirsutum HOM05D003451 ORTHO05D003918 3.4e-13 77.8 60 66.7
Hund07469 Selenicereus undatus HOM05D003451 ORTHO05D003918 3.4e-13 77.8 53 64.2
Gohir.D09G107600 Gossypium hirsutum HOM05D003451 ORTHO05D003918 4.5e-13 77.4 60 66.7
PSO384G4628 Papaver somniferum HOM05D003451 ORTHO05D003918 4.5e-13 77.4 58 63.8
Sopen11g008970 Solanum pennellii HOM05D000006 ORTHO05D000001 4.5e-13 77.4 48 70.8
Manes.14G004400 Manihot esculenta HOM05D003451 ORTHO05D003918 5.9e-13 77.0 56 66.1
THA.LOC104816872 Tarenaya hassleriana HOM05D003451 ORTHO05D003918 5.9e-13 77.0 59 64.4
Duzib168G0102 Durio zibethinus HOM05D003451 ORTHO05D003918 7.6e-13 76.6 60 65.0
Gohir.A05G073100 Gossypium hirsutum HOM05D003451 ORTHO05D003918 7.6e-13 76.6 60 65.0
Atru.chr3.2648 Acer truncatum HOM05D003451 ORTHO05D003918 1.0e-12 76.3 60 65.0
Gohir.D05G076000 Gossypium hirsutum HOM05D003451 ORTHO05D003918 1.0e-12 76.3 60 65.0
Gorai.009G077300 Gossypium raimondii HOM05D003451 ORTHO05D003918 1.0e-12 76.3 60 65.0
PSO339G2767 Papaver somniferum HOM05D003451 ORTHO05D003918 1.3e-12 75.9 58 62.1
Ciclev10016808m.g Citrus clementina HOM05D003451 ORTHO05D003918 1.7e-12 75.5 60 65.0
COL.COLO4_37539 Corchorus olitorius HOM05D003451 ORTHO05D003918 1.7e-12 75.5 60 65.0
Duzib170G0373 Durio zibethinus HOM05D003451 ORTHO05D003918 1.7e-12 75.5 60 63.3
Gorai.006G125200 Gossypium raimondii HOM05D003451 ORTHO05D003918 1.7e-12 75.5 59 66.1
SEGI_06162 Sequoiadendron giganteum HOM05D003451 ORTHO05D003918 1.7e-12 75.5 49 71.4
TWI32G0677 Tripterygium wilfordii HOM05D003451 ORTHO05D003918 1.7e-12 75.5 60 65.0
TWI60G0042 Tripterygium wilfordii HOM05D003451 ORTHO05D003918 1.7e-12 75.5 60 65.0
Thecc.09G245200 Theobroma cacao HOM05D003451 ORTHO05D003918 3.8e-12 74.3 60 65.0
Hund07468 Selenicereus undatus HOM05D003451 ORTHO05D003918 5.0e-12 73.9 58 62.1
Gohir.A13G218200 Gossypium hirsutum HOM05D003451 ORTHO05D003918 6.5e-12 73.6 60 63.3
Gorai.013G253000 Gossypium raimondii HOM05D003451 ORTHO05D003918 6.5e-12 73.6 60 63.3
EL10Ac4g10211 Beta vulgaris HOM05D003451 ORTHO05D003918 8.4e-12 73.2 58 60.3
Gohir.D13G221900 Gossypium hirsutum HOM05D003451 ORTHO05D003918 1.9e-11 72.0 60 61.7
Manes.06G162200 Manihot esculenta HOM05D003451 ORTHO05D003918 1.9e-11 72.0 56 62.5
Zm00001eb417640 Zea mays HOM05D003451 ORTHO05D003918 1.9e-11 72.0 61 59.0
Ah.06g193890 Amaranthus hybridus HOM05D003451 ORTHO05D003918 2.5e-11 71.6 61 60.7
Cpa.g.sc84.26 Carica papaya HOM05D003451 ORTHO05D003918 2.5e-11 71.6 60 61.7
Nitab4.5_0003160g0010 Nicotiana tabacum HOM05D003451 ORTHO05D003918 2.5e-11 71.6 47 72.3
TWI34G0098 Tripterygium wilfordii HOM05D003451 ORTHO05D003918 2.5e-11 71.6 60 61.7
Pp3c11_21740 Physcomitrium patens HOM05D003451 ORTHO05D003918 4.2e-11 70.9 58 60.3
QL01p004066 Quercus lobata HOM05D003451 ORTHO05D003918 4.2e-11 70.9 58 60.3
AL1G59400 Arabidopsis lyrata HOM05D003451 ORTHO05D003918 7.2e-11 70.1 60 56.7
AUR62039863 Chenopodium quinoa HOM05D003451 ORTHO05D003918 7.2e-11 70.1 57 57.9
THA.LOC104811180 Tarenaya hassleriana HOM05D003451 ORTHO05D003918 7.2e-11 70.1 60 56.7
Ah.04g162060 Amaranthus hybridus HOM05D003451 ORTHO05D003918 9.3e-11 69.7 58 58.6
Pp3c7_3000 Physcomitrium patens HOM05D003451 ORTHO05D003918 1.2e-10 69.3 58 58.6
CARHR041670 Cardamine hirsuta HOM05D003451 ORTHO05D003918 1.6e-10 68.9 56 62.5
BcaB04g17193 Brassica carinata HOM05D003451 ORTHO05D003918 2.1e-10 68.6 61 57.4
BcaC08g43315 Brassica carinata HOM05D003451 ORTHO05D003918 2.1e-10 68.6 60 58.3
A06p02460 Brassica napus HOM05D003451 ORTHO05D003918 2.1e-10 68.6 60 58.3
C06p06630 Brassica napus HOM05D003451 ORTHO05D003918 2.1e-10 68.6 60 58.3
BolC6t35776H Brassica oleracea HOM05D003451 ORTHO05D003918 2.1e-10 68.6 60 58.3
BraA06t23452Z Brassica rapa HOM05D003451 ORTHO05D003918 2.1e-10 68.6 60 58.3
Mapoly0141s0030 Marchantia polymorpha HOM05D003451 ORTHO05D003918 2.1e-10 68.6 61 55.7
CSS0010395 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 2.7e-10 68.2 35 91.4
CiPaw.14G116900 Carya illinoinensis HOM05D003451 ORTHO05D003918 2.7e-10 68.2 58 58.6
Aa31LG10G3250 Aethionema arabicum HOM05D003451 ORTHO05D003918 3.5e-10 67.8 60 58.3
ATR0021G055 Amborella trichopoda HOM05D003451 ORTHO05D003918 3.5e-10 67.8 59 61.0
BcaB07g33596 Brassica carinata HOM05D003451 ORTHO05D003918 3.5e-10 67.8 60 56.7
CiPaw.13G154800 Carya illinoinensis HOM05D003451 ORTHO05D003918 3.5e-10 67.8 58 56.9
Dinv39631 Davidia involucrata HOM05D003451 ORTHO05D003918 3.5e-10 67.8 57 57.9
CANSAT54G1907 Cannabis sativa HOM05D003451 ORTHO05D003918 4.6e-10 67.4 61 57.4
Cfa009811 Carpinus fangiana HOM05D003451 ORTHO05D003918 4.6e-10 67.4 58 56.9
Haze_23175 Corylus avellana HOM05D003451 ORTHO05D003918 4.6e-10 67.4 58 56.9
Potri.009G051000 Populus trichocarpa HOM05D003451 ORTHO05D003918 6.1e-10 67.0 60 58.3
Sabra06G0033600 Salix brachista HOM05D003451 ORTHO05D003918 6.1e-10 67.0 53 62.3
Zm00001eb062000 Zea mays HOM05D003451 ORTHO05D003918 6.1e-10 67.0 42 69.0
BcaC01g01279 Brassica carinata HOM05D003451 ORTHO05D003918 7.9e-10 66.6 61 55.7
A08p02680 Brassica napus HOM05D003451 ORTHO05D003918 7.9e-10 66.6 61 55.7
C03p90160 Brassica napus HOM05D003451 ORTHO05D003918 7.9e-10 66.6 61 55.7
BolC3t21338H Brassica oleracea HOM05D003451 ORTHO05D003918 7.9e-10 66.6 61 55.7
BraA08t32308Z Brassica rapa HOM05D003451 ORTHO05D003918 7.9e-10 66.6 61 55.7
RcHm_v2.0_Chr5g0053031 Rosa chinensis HOM05D003451 ORTHO05D003918 7.9e-10 66.6 61 55.7
Cre12.g526750 Chlamydomonas reinhardtii HOM05D003451 ORTHO05D003918 1.0e-09 66.2 46 67.4
Sp1g38150 Schrenkiella parvula HOM05D003451 ORTHO05D003918 1.0e-09 66.2 60 55.0
SGA_v2.0_scaffold42G16078 Striga asiatica HOM05D003451 ORTHO05D003918 1.0e-09 66.2 48 66.7
BcaC08g43919 Brassica carinata HOM05D003451 ORTHO05D003918 1.3e-09 65.9 60 53.3
C06p13130 Brassica napus HOM05D003451 ORTHO05D003918 1.3e-09 65.9 60 53.3
BolC6t36469H Brassica oleracea HOM05D003451 ORTHO05D003918 1.3e-09 65.9 60 53.3
FAN25G3146 Fragaria x ananassa HOM05D003451 ORTHO05D003918 1.3e-09 65.9 61 52.5
A05p19520 Brassica napus HOM05D003451 ORTHO05D003918 1.8e-09 65.5 60 53.3
CBR_g6624 Chara braunii HOM05D003451 ORTHO05D003918 1.8e-09 65.5 61 54.1
BcaB02g11254 Brassica carinata HOM05D003451 ORTHO05D003918 2.3e-09 65.1 60 53.3
Thhalv10011787m.g Eutrema salsugineum HOM05D003451 ORTHO05D003918 2.3e-09 65.1 58 55.2
Os03g0809900 Oryza sativa ssp. japonica HOM05D003451 ORTHO05D003918 2.3e-09 65.1 48 58.3
Carub.0001s4036 Capsella rubella HOM05D003451 ORTHO05D003918 3.0e-09 64.7 73 49.3
BraA05t20856Z Brassica rapa HOM05D003451 ORTHO05D003918 3.9e-09 64.3 60 51.7
Ca_24487_v3 Cicer arietinum L. HOM05D003451 ORTHO05D003918 3.9e-09 64.3 60 56.7
FvH4_3g28440 Fragaria vesca HOM05D003451 ORTHO05D003918 3.9e-09 64.3 61 52.5
FAN11G2798 Fragaria x ananassa HOM05D003451 ORTHO05D003918 3.9e-09 64.3 61 52.5
FAN16G1931 Fragaria x ananassa HOM05D003451 ORTHO05D003918 3.9e-09 64.3 61 52.5
FAN21G2060 Fragaria x ananassa HOM05D003451 ORTHO05D003918 3.9e-09 64.3 50 60.0
Lalb_Chr09g0320421 Lupinus albus HOM05D003451 ORTHO05D003918 3.9e-09 64.3 60 55.0
Psat2g186200 Pisum sativum HOM05D003451 ORTHO05D003918 3.9e-09 64.3 60 56.7
TPR.G37988 Trifolium pratense HOM05D003451 ORTHO05D003918 3.9e-09 64.3 60 56.7
arahy.Tifrunner.gnm1.ann1.KKL1UE Arachis hypogaea HOM05D003451 ORTHO05D003918 6.7e-09 63.5 61 52.5
arahy.Tifrunner.gnm1.ann1.ZE8HJS Arachis hypogaea HOM05D003451 ORTHO05D003918 6.7e-09 63.5 61 52.5
Zm00001eb267400 Zea mays HOM05D001283 ORTHO05D001109 6.7e-09 63.5 47 61.7
Glyma.01G227300 Glycine max HOM05D003451 ORTHO05D003918 8.7e-09 63.2 60 55.0
Glyma.11G015500 Glycine max HOM05D003451 ORTHO05D003918 8.7e-09 63.2 60 55.0
Phvul.002G034400 Phaseolus vulgaris HOM05D003451 ORTHO05D003918 8.7e-09 63.2 60 55.0
Sabra16G0156600 Salix brachista HOM05D003451 ORTHO05D003918 8.7e-09 63.2 63 54.0
SMO144G0212 Selaginella moellendorffii HOM05D003451 ORTHO05D003918 8.7e-09 63.2 56 55.4
Zm00001eb109210 Zea mays HOM05D003451 ORTHO05D003918 8.7e-09 63.2 48 58.3
Zm00001eb207160 Zea mays HOM05D003451 ORTHO05D003918 8.7e-09 63.2 48 58.3
AT1G51510 Arabidopsis thaliana HOM05D003451 ORTHO05D003918 1.1e-08 62.8 51 56.9
Lalb_Chr16g0376831 Lupinus albus HOM05D003451 ORTHO05D003918 1.5e-08 62.4 60 51.7
Potri.006G048300 Populus trichocarpa HOM05D003451 ORTHO05D003918 1.5e-08 62.4 53 58.5
AagrBONN_evm.TU.Sc2ySwM_344.5320 Anthoceros agrestis HOM05D003451 ORTHO05D003918 1.9e-08 62.0 58 53.4
VMungo1215G1947 Vigna mungo HOM05D003451 ORTHO05D003918 2.5e-08 61.6 53 56.6
LjContig00222g0014229 Lotus japonicus HOM05D003451 ORTHO05D003918 3.3e-08 61.2 60 53.3
QL07p002699 Quercus lobata HOM05D003451 ORTHO05D003918 3.3e-08 61.2 47 57.4
MD03G1171900 Malus domestica HOM05D003451 ORTHO05D003918 5.7e-08 60.5 59 52.5
MD11G1189700 Malus domestica HOM05D003451 ORTHO05D003918 5.7e-08 60.5 59 52.5
Medtr5g008890 Medicago truncatula HOM05D003451 ORTHO05D003918 5.7e-08 60.5 58 53.4
Prupe.4G255000 Prunus persica HOM05D003451 ORTHO05D003918 5.7e-08 60.5 50 60.0
Potri.001G255600 Populus trichocarpa HOM05D003451 ORTHO05D003918 1.3e-07 59.3 60 53.3
COL.COLO4_05419 Corchorus olitorius HOM05D003451 ORTHO05D003918 6.3e-07 57.0 49 55.1
MD12G1080200 Malus domestica HOM05D003451 ORTHO05D003918 8.2e-07 56.6 69 46.4
PRCOL_00005338 Prasinoderma coloniale HOM05D003451 ORTHO05D003918 5.3e-06 53.9 53 45.3
Pp3c20_17650 Physcomitrium patens HOM05D003451 ORTHO05D003918 6.9e-06 53.5 46 56.5


User provided reference genes

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