Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004269 Camellia sinensis var. sinensis HOM05D003409 ORTHO05D004015 6.4e-85 317.4 161 100.0
CSS0024632 Camellia sinensis var. sinensis HOM05D003409 ORTHO05D004015 7.3e-57 224.2 164 75.0
CSS0010821 Camellia sinensis var. sinensis HOM05D003409 ORTHO05D004015 3.0e-26 122.5 73 86.3
Rhsim06G0084600 Rhododendron simsii HOM05D003409 ORTHO05D004015 6.7e-26 121.3 73 84.9
Rhsim10G0056000 Rhododendron simsii HOM05D003409 ORTHO05D004015 6.7e-26 121.3 73 84.9
vmacro15782 Vaccinium macrocarpon HOM05D003409 ORTHO05D004015 6.7e-26 121.3 73 84.9
vmacro11609 Vaccinium macrocarpon HOM05D003409 ORTHO05D004015 1.9e-25 119.8 170 47.6
Oeu039418.1 Olea europaea HOM05D003409 ORTHO05D004015 4.3e-25 118.6 73 83.6
Dinv10352 Davidia involucrata HOM05D003409 ORTHO05D004015 7.4e-25 117.9 73 83.6
Hma1.2p1_1804F.1_g303050 Hydrangea macrophylla HOM05D003409 ORTHO05D004015 7.4e-25 117.9 73 83.6
Hma1.2p1_1804F.1_g303060 Hydrangea macrophylla HOM05D003409 ORTHO05D004015 7.4e-25 117.9 73 83.6
SalBow5G1153 Salvia bowleyana HOM05D003409 ORTHO05D004015 7.4e-25 117.9 73 83.6
unitig_578.g16234 Utricularia gibba HOM05D003409 ORTHO05D004015 7.4e-25 117.9 73 80.8
Actinidia35412 Actinidia chinensis HOM05D003409 ORTHO05D004015 9.7e-25 117.5 73 83.6
SGA_v2.0_scaffold1G00379 Striga asiatica HOM05D003409 ORTHO05D004015 9.7e-25 117.5 73 82.2
SGA_v2.0_scaffold42G15966 Striga asiatica HOM05D003409 ORTHO05D004015 9.7e-25 117.5 73 82.2
Migut.H01746 Erythranthe guttata HOM05D003409 ORTHO05D004015 1.7e-24 116.7 73 82.2
Sabra16G0242500 Salix brachista HOM05D003409 ORTHO05D004015 1.7e-24 116.7 73 80.8
Actinidia37139 Actinidia chinensis HOM05D003409 ORTHO05D004015 2.2e-24 116.3 73 82.2
Lj1A892G90 Lonicera japonica HOM05D003409 ORTHO05D004015 2.2e-24 116.3 73 82.2
Cpa.g.sc12.127 Carica papaya HOM05D003409 ORTHO05D004015 4.8e-24 115.2 73 82.2
TPR.G17957 Trifolium pratense HOM05D003409 ORTHO05D004015 4.8e-24 115.2 142 50.0
GSVIVG01014717001 Vitis vinifera HOM05D003409 ORTHO05D004015 4.8e-24 115.2 73 82.2
Potri.001G369600 Populus trichocarpa HOM05D003409 ORTHO05D004015 6.3e-24 114.8 142 49.3
Sed0016663 Sechium edule HOM05D003409 ORTHO05D004015 6.3e-24 114.8 73 80.8
ClCG09G021450 Citrullus lanatus HOM05D003409 ORTHO05D004015 8.2e-24 114.4 73 80.8
Cc04_g00350 Coffea canephora HOM05D003409 ORTHO05D004015 8.2e-24 114.4 73 80.8
MELO3C024955.2 Cucumis melo HOM05D003409 ORTHO05D004015 8.2e-24 114.4 73 80.8
CsaV3_7G011550 Cucumis sativus L. HOM05D003409 ORTHO05D004015 8.2e-24 114.4 73 80.8
VMungo0540G1920 Vigna mungo HOM05D003409 ORTHO05D004015 8.2e-24 114.4 73 80.8
Oeu005478.2 Olea europaea HOM05D003409 ORTHO05D004015 1.1e-23 114.0 142 50.7
Hund01870 Selenicereus undatus HOM05D003409 ORTHO05D004015 1.1e-23 114.0 73 79.5
Sc03g0011610 Simmondsia chinensis HOM05D003409 ORTHO05D004015 1.1e-23 114.0 76 77.6
CiPaw.11G205600 Carya illinoinensis HOM05D003409 ORTHO05D004015 1.4e-23 113.6 73 79.5
Manes.11G044000 Manihot esculenta HOM05D003409 ORTHO05D004015 1.4e-23 113.6 73 79.5
Hund01871 Selenicereus undatus HOM05D003409 ORTHO05D004015 1.4e-23 113.6 73 78.1
Aqoxy1G01862 Aquilegia oxysepala HOM05D003409 ORTHO05D004015 1.8e-23 113.2 73 80.8
Haze_09846 Corylus avellana HOM05D003409 ORTHO05D004015 1.8e-23 113.2 73 79.5
DCAR_017070 Daucus carota HOM05D003409 ORTHO05D004015 1.8e-23 113.2 73 78.1
Dinv40878 Davidia involucrata HOM05D003409 ORTHO05D004015 1.8e-23 113.2 73 79.5
Phvul.006G059200 Phaseolus vulgaris HOM05D003409 ORTHO05D004015 1.8e-23 113.2 73 79.5
arahy.Tifrunner.gnm1.ann1.K9VFVK Arachis hypogaea HOM05D003409 ORTHO05D004015 2.4e-23 112.8 73 79.5
arahy.Tifrunner.gnm1.ann1.PKXG4Q Arachis hypogaea HOM05D003409 ORTHO05D004015 2.4e-23 112.8 73 79.5
Nn4g24629 Nelumbo nucifera HOM05D003409 ORTHO05D004015 2.4e-23 112.8 73 79.5
PSO210G2179 Papaver somniferum HOM05D003409 ORTHO05D004015 2.4e-23 112.8 73 79.5
PSO210G5345 Papaver somniferum HOM05D003409 ORTHO05D004015 2.4e-23 112.8 73 79.5
Lj6g0020357 Lotus japonicus HOM05D003409 ORTHO05D004015 3.1e-23 112.5 73 79.5
Atru.chr2.3736 Acer truncatum HOM05D003409 ORTHO05D004015 4.1e-23 112.1 73 79.5
Atru.chr2.3741 Acer truncatum HOM05D003409 ORTHO05D004015 4.1e-23 112.1 73 79.5
Psat5g165320 Pisum sativum HOM05D003409 ORTHO05D004015 4.1e-23 112.1 142 49.3
CANSAT11G2129 Cannabis sativa HOM05D003409 ORTHO05D004015 5.3e-23 111.7 73 78.1
ATR0751G119 Amborella trichopoda HOM05D003409 ORTHO05D004015 6.9e-23 111.3 73 78.1
Ca_12445_v3 Cicer arietinum L. HOM05D003409 ORTHO05D004015 6.9e-23 111.3 138 51.4
Ciclev10007740m.g Citrus clementina HOM05D003409 ORTHO05D004015 9.1e-23 110.9 73 78.1
PSO478G4279 Papaver somniferum HOM05D003409 ORTHO05D004015 9.1e-23 110.9 73 78.1
Peaxi162Scf00057g02234 Petunia axillaris HOM05D003409 ORTHO05D004015 9.1e-23 110.9 161 46.0
Prupe.8G036800 Prunus persica HOM05D003409 ORTHO05D004015 9.1e-23 110.9 73 76.7
PGSC0003DMG400022346 Solanum tuberosum HOM05D003409 ORTHO05D004015 9.1e-23 110.9 73 79.5
Lalb_Chr15g0082251 Lupinus albus HOM05D003409 ORTHO05D004015 1.2e-22 110.5 73 76.7
Medtr3g460700 Medicago truncatula HOM05D003409 ORTHO05D004015 1.2e-22 110.5 142 49.3
TWI38G2383 Tripterygium wilfordii HOM05D003409 ORTHO05D004015 1.2e-22 110.5 73 79.5
TWI39G0812 Tripterygium wilfordii HOM05D003409 ORTHO05D004015 1.2e-22 110.5 73 79.5
Glyma.08G332000 Glycine max HOM05D003409 ORTHO05D004015 1.5e-22 110.2 142 47.9
Lalb_Chr20g0114091 Lupinus albus HOM05D003409 ORTHO05D004015 1.5e-22 110.2 76 73.7
CAN.G424.40 Capsicum annuum HOM05D003409 ORTHO05D004015 2.0e-22 109.8 73 78.1
Eucgr.C03787 Eucalyptus grandis HOM05D003409 ORTHO05D004015 2.0e-22 109.8 72 79.2
Nitab4.5_0002789g0050 Nicotiana tabacum HOM05D003409 ORTHO05D004015 2.0e-22 109.8 73 78.1
Solyc02g079415.1 Solanum lycopersicum HOM05D003409 ORTHO05D004015 2.0e-22 109.8 73 78.1
Solyc07g052110.4 Solanum lycopersicum HOM05D003409 ORTHO05D004015 2.0e-22 109.8 73 78.1
Sopen02g024220 Solanum pennellii HOM05D003409 ORTHO05D004015 2.0e-22 109.8 73 78.1
Sopen07g025740 Solanum pennellii HOM05D003409 ORTHO05D004015 2.0e-22 109.8 73 78.1
THA.LOC104817712 Tarenaya hassleriana HOM05D003409 ORTHO05D004015 2.0e-22 109.8 73 78.1
Cfa016917 Carpinus fangiana HOM05D003409 ORTHO05D004015 2.6e-22 109.4 142 48.6
Glyma.18G075000 Glycine max HOM05D003409 ORTHO05D004015 3.4e-22 109.0 142 47.2
QL08p003492 Quercus lobata HOM05D003409 ORTHO05D004015 3.4e-22 109.0 142 47.9
RcHm_v2.0_Chr4g0408681 Rosa chinensis HOM05D003409 ORTHO05D004015 3.4e-22 109.0 73 75.3
PGR083G1781 Punica granatum HOM05D003409 ORTHO05D004015 4.5e-22 108.6 73 75.3
FvH4_4g11570 Fragaria vesca HOM05D003409 ORTHO05D004015 7.7e-22 107.8 73 74.0
FAN04G1394 Fragaria x ananassa HOM05D003409 ORTHO05D004015 7.7e-22 107.8 73 74.0
FAN07G2833 Fragaria x ananassa HOM05D003409 ORTHO05D004015 7.7e-22 107.8 73 74.0
FAN12G1033 Fragaria x ananassa HOM05D003409 ORTHO05D004015 7.7e-22 107.8 73 74.0
FAN12G3679 Fragaria x ananassa HOM05D003409 ORTHO05D004015 7.7e-22 107.8 73 74.0
FAN17G0359 Fragaria x ananassa HOM05D003409 ORTHO05D004015 7.7e-22 107.8 73 74.0
FAN17G1343 Fragaria x ananassa HOM05D003409 ORTHO05D004015 7.7e-22 107.8 73 74.0
FAN22G0308 Fragaria x ananassa HOM05D003409 ORTHO05D004015 7.7e-22 107.8 73 74.0
HanXRQChr11g0342791 Helianthus annuus HOM05D003409 ORTHO05D004015 1.0e-21 107.5 73 76.7
Lsat_1_v5_gn_2_49000 Lactuca sativa HOM05D003409 ORTHO05D004015 1.0e-21 107.5 73 76.7
AL7G26290 Arabidopsis lyrata HOM05D003409 ORTHO05D004015 2.2e-21 106.3 73 76.7
Carub.0007s1427 Capsella rubella HOM05D003409 ORTHO05D004015 2.2e-21 106.3 73 76.7
AT4G26600 Arabidopsis thaliana HOM05D003409 ORTHO05D004015 2.9e-21 105.9 73 75.3
EL10Ac4g07529 Beta vulgaris HOM05D003409 ORTHO05D004015 2.9e-21 105.9 73 74.0
CARHR234180 Cardamine hirsuta HOM05D003409 ORTHO05D004015 2.9e-21 105.9 73 76.7
ECA248G0890 Erigeron canadensis HOM05D003409 ORTHO05D004015 2.9e-21 105.9 73 74.0
AUR62017142 Chenopodium quinoa HOM05D003409 ORTHO05D004015 3.8e-21 105.5 69 75.4
AUR62035665 Chenopodium quinoa HOM05D003409 ORTHO05D004015 3.8e-21 105.5 69 75.4
Carub.0008s1625 Capsella rubella HOM05D003409 ORTHO05D004015 6.5e-21 104.8 73 75.3
CiPaw.12G139700 Carya illinoinensis HOM05D003409 ORTHO05D004015 6.5e-21 104.8 73 75.3
Aa31LG3G11830 Aethionema arabicum HOM05D003409 ORTHO05D004015 8.5e-21 104.4 73 75.3
AL8G31480 Arabidopsis lyrata HOM05D003409 ORTHO05D004015 8.5e-21 104.4 73 74.0
AT5G55920 Arabidopsis thaliana HOM05D003409 ORTHO05D004015 8.5e-21 104.4 73 74.0
Sp7g24560 Schrenkiella parvula HOM05D003409 ORTHO05D004015 1.1e-20 104.0 73 75.3
BcaB08g35958 Brassica carinata HOM05D003409 ORTHO05D004015 1.4e-20 103.6 73 75.3
BcaC04g20188 Brassica carinata HOM05D003409 ORTHO05D004015 1.4e-20 103.6 73 75.3
BcaC09g50636 Brassica carinata HOM05D003409 ORTHO05D004015 1.4e-20 103.6 73 75.3
BcaNung02400 Brassica carinata HOM05D003409 ORTHO05D004015 1.4e-20 103.6 73 75.3
A01p17840 Brassica napus HOM05D003409 ORTHO05D004015 1.4e-20 103.6 73 75.3
C01p22640 Brassica napus HOM05D003409 ORTHO05D004015 1.4e-20 103.6 73 75.3
C09p46870 Brassica napus HOM05D003409 ORTHO05D004015 1.4e-20 103.6 73 75.3
BolC1t02194H Brassica oleracea HOM05D003409 ORTHO05D004015 1.4e-20 103.6 73 75.3
BolC9t57537H Brassica oleracea HOM05D003409 ORTHO05D004015 1.4e-20 103.6 73 75.3
MD04G1044800 Malus domestica HOM05D003409 ORTHO05D004015 1.9e-20 103.2 73 72.6
SEGI_08867 Sequoiadendron giganteum HOM05D003409 ORTHO05D004015 1.9e-20 103.2 73 72.6
Aa31LG5G11970 Aethionema arabicum HOM05D003409 ORTHO05D004015 2.5e-20 102.8 73 74.0
BcaB05g22238 Brassica carinata HOM05D003409 ORTHO05D004015 2.5e-20 102.8 73 74.0
A02p09450 Brassica napus HOM05D003409 ORTHO05D004015 2.5e-20 102.8 73 74.0
BolC2t07681H Brassica oleracea HOM05D003409 ORTHO05D004015 2.5e-20 102.8 73 74.0
BraA02t06009Z Brassica rapa HOM05D003409 ORTHO05D004015 2.5e-20 102.8 73 74.0
BraA01t01740Z Brassica rapa HOM05D003409 ORTHO05D004015 3.2e-20 102.4 73 74.0
BraA10t43407Z Brassica rapa HOM05D003409 ORTHO05D004015 3.2e-20 102.4 73 74.0
Duzib213G0349 Durio zibethinus HOM05D003409 ORTHO05D004015 3.2e-20 102.4 73 72.6
Gohir.A13G131500 Gossypium hirsutum HOM05D003409 ORTHO05D004015 3.2e-20 102.4 73 72.6
Gorai.013G151300 Gossypium raimondii HOM05D003409 ORTHO05D004015 3.2e-20 102.4 73 72.6
Sp6g17770 Schrenkiella parvula HOM05D003409 ORTHO05D004015 3.2e-20 102.4 73 72.6
Thecc.07G009800 Theobroma cacao HOM05D003409 ORTHO05D004015 3.2e-20 102.4 73 72.6
A10p13110 Brassica napus HOM05D003409 ORTHO05D004015 4.2e-20 102.1 73 72.6
CARHR269290 Cardamine hirsuta HOM05D003409 ORTHO05D004015 4.2e-20 102.1 78 67.9
Thhalv10024758m.g Eutrema salsugineum HOM05D003409 ORTHO05D004015 4.2e-20 102.1 73 74.0
Gohir.D13G135000 Gossypium hirsutum HOM05D003409 ORTHO05D004015 4.2e-20 102.1 73 72.6
C02p15740 Brassica napus HOM05D003409 ORTHO05D004015 5.5e-20 101.7 73 72.6
SMO367G0604 Selaginella moellendorffii HOM05D003409 ORTHO05D004015 5.5e-20 101.7 78 65.4
Thhalv10012859m.g Eutrema salsugineum HOM05D003409 ORTHO05D004015 9.4e-20 100.9 73 72.6
COL.COLO4_07725 Corchorus olitorius HOM05D003409 ORTHO05D004015 1.2e-19 100.5 73 71.2
CBR_g8798 Chara braunii HOM05D003409 ORTHO05D004015 2.7e-19 99.4 73 68.5
Gohir.A01G093200 Gossypium hirsutum HOM05D003409 ORTHO05D004015 3.6e-19 99.0 73 69.9
Gohir.D01G077700 Gossypium hirsutum HOM05D003409 ORTHO05D004015 3.6e-19 99.0 73 69.9
Gorai.002G102200 Gossypium raimondii HOM05D003409 ORTHO05D004015 3.6e-19 99.0 73 69.9
Nitab4.5_0000160g0180 Nicotiana tabacum HOM05D003409 ORTHO05D004015 4.7e-19 98.6 102 55.9
AagrBONN_evm.TU.Sc2ySwM_117.3404 Anthoceros agrestis HOM05D003409 ORTHO05D004015 6.1e-19 98.2 73 67.1
Pp3c1_15210 Physcomitrium patens HOM05D003409 ORTHO05D004015 3.9e-18 95.5 73 65.8
Mapoly0034s0108 Marchantia polymorpha HOM05D003409 ORTHO05D004015 6.7e-18 94.7 73 64.4
HPP92_010888 Vanilla planifolia HOM05D003409 ORTHO05D004015 8.8e-18 94.4 73 67.1
HPP92_010890 Vanilla planifolia HOM05D003409 ORTHO05D004015 8.8e-18 94.4 73 67.1
MCO14G316 Micromonas commoda HOM05D003409 ORTHO05D004015 1.1e-17 94.0 78 65.4
Eucgr.F02036 Eucalyptus grandis HOM05D003409 ORTHO05D004015 1.7e-16 90.1 142 43.7
Zm00001eb189070 Zea mays HOM05D003409 ORTHO05D004015 4.8e-16 88.6 73 63.0
BcaC03g15509 Brassica carinata HOM05D003409 ORTHO05D004015 6.3e-16 88.2 69 66.7
BcaC07g37821 Brassica carinata HOM05D003409 ORTHO05D004015 6.3e-16 88.2 69 66.7
A02p19390 Brassica napus HOM05D003409 ORTHO05D004015 8.2e-16 87.8 69 66.7
Zm00001eb253180 Zea mays HOM05D003409 ORTHO05D004015 1.1e-15 87.4 73 61.6
C03p85060 Brassica napus HOM05D003409 ORTHO05D004015 1.8e-15 86.7 69 65.2
BolC2t10305H Brassica oleracea HOM05D003409 ORTHO05D004015 1.8e-15 86.7 69 65.2
PRCOL_00002474 Prasinoderma coloniale HOM05D003409 ORTHO05D004015 1.8e-15 86.7 73 60.3
Lsat_1_v5_gn_1_7960 Lactuca sativa HOM05D003409 ORTHO05D004015 3.1e-15 85.9 73 67.1
Os02g0724600 Oryza sativa ssp. japonica HOM05D003409 ORTHO05D004015 3.1e-15 85.9 73 60.3
Os09g0551300 Oryza sativa ssp. japonica HOM05D003409 ORTHO05D004015 3.1e-15 85.9 73 60.3
Cre06.g273413 Chlamydomonas reinhardtii HOM05D003409 ORTHO05D004015 4.1e-15 85.5 73 60.3
C08p21680 Brassica napus HOM05D003409 ORTHO05D004015 1.0e-13 80.9 71 63.4
BolC8t48208H Brassica oleracea HOM05D003409 ORTHO05D004015 1.0e-13 80.9 69 63.8
A09p23650 Brassica napus HOM05D003409 ORTHO05D004015 1.3e-13 80.5 69 62.3
C02p15590 Brassica napus HOM05D003409 ORTHO05D004015 1.7e-13 80.1 97 51.5
Cfa025549 Carpinus fangiana HOM05D003409 ORTHO05D004015 6.5e-13 78.2 85 50.6
MBI14_g18948_MAGBIO Magnolia biondii HOM05D003409 ORTHO05D004015 1.2e-11 73.9 43 83.7
CAN.G618.4 Capsicum annuum HOM05D003409 ORTHO05D004015 2.7e-11 72.8 44 79.5
CDE07G1104 Ceratophyllum demersum HOM05D003409 ORTHO05D004015 8.0e-11 71.2 122 39.3
CAN.G1245.14 Capsicum annuum HOM05D003487 ORTHO05D000140 1.8e-10 70.1 43 79.1
BcaC07g39178 Brassica carinata HOM05D003409 ORTHO05D004015 5.7e-09 65.1 43 74.4
SGA_v2.0_scaffold332G48953 Striga asiatica HOM05D003409 ORTHO05D011352 1.1e-07 60.8 39 79.5
TAR383G0304 Trochodendron aralioides HOM05D003409 ORTHO05D004015 7.0e-07 58.2 33 84.8


User provided reference genes

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