Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000135 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D017531 5.5e-68 260.8 125 100.0
CSS0041549 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D004671 6.1e-59 230.7 123 91.1
Dinv35485 Davidia involucrata HOM05D002182 ORTHO05D004671 1.7e-48 196.1 117 79.5
Actinidia20028 Actinidia chinensis HOM05D002182 ORTHO05D004671 6.3e-48 194.1 118 78.8
Potri.005G067100 Populus trichocarpa HOM05D002182 ORTHO05D004671 2.0e-46 189.1 120 74.2
Cfa002178 Carpinus fangiana HOM05D002182 ORTHO05D004671 6.5e-45 184.1 126 70.6
CiPaw.04G079900 Carya illinoinensis HOM05D002182 ORTHO05D004671 1.5e-44 183.0 120 73.3
GSVIVG01026461001 Vitis vinifera HOM05D002182 ORTHO05D004671 2.5e-44 182.2 128 71.9
Thecc.01G137400 Theobroma cacao HOM05D002182 ORTHO05D004671 3.2e-44 181.8 123 70.7
MD15G1134700 Malus domestica HOM05D002182 ORTHO05D004671 4.2e-44 181.4 118 72.9
vmacro12745 Vaccinium macrocarpon HOM05D002182 ORTHO05D004671 2.1e-43 179.1 122 73.0
Haze_25328 Corylus avellana HOM05D002182 ORTHO05D017531 3.6e-43 178.3 120 71.7
TWI79G1433 Tripterygium wilfordii HOM05D002182 ORTHO05D004671 4.7e-43 177.9 120 71.7
Duzib264G0915 Durio zibethinus HOM05D002182 ORTHO05D004671 1.8e-42 176.0 117 69.2
Rhsim10G0124100 Rhododendron simsii HOM05D002182 ORTHO05D004671 1.8e-42 176.0 120 71.7
COL.COLO4_35815 Corchorus olitorius HOM05D002182 ORTHO05D004671 5.2e-42 174.5 120 69.2
VMungo1309G0220 Vigna mungo HOM05D002182 ORTHO05D004671 1.5e-41 172.9 123 69.9
Phvul.009G154850 Phaseolus vulgaris HOM05D002182 ORTHO05D004671 4.4e-41 171.4 123 67.5
Glyma.06G155600 Glycine max HOM05D002182 ORTHO05D004671 5.7e-41 171.0 123 66.7
Lalb_Chr11g0068591 Lupinus albus HOM05D002182 ORTHO05D004671 1.3e-40 169.9 123 68.3
Atru.chr4.980 Acer truncatum HOM05D002182 ORTHO05D004671 2.8e-40 168.7 121 67.8
ClCG10G017010 Citrullus lanatus HOM05D002182 ORTHO05D004671 4.8e-40 167.9 128 64.8
arahy.Tifrunner.gnm1.ann1.K5KUZ3 Arachis hypogaea HOM05D002182 ORTHO05D004671 3.1e-39 165.2 119 66.4
Gohir.D11G061900 Gossypium hirsutum HOM05D002182 ORTHO05D004671 3.1e-39 165.2 117 67.5
Gorai.007G066700 Gossypium raimondii HOM05D002182 ORTHO05D004671 3.1e-39 165.2 117 67.5
Oeu050090.2 Olea europaea HOM05D002182 ORTHO05D004671 1.2e-38 163.3 117 69.2
arahy.Tifrunner.gnm1.ann1.XVSB6Y Arachis hypogaea HOM05D002182 ORTHO05D004671 2.0e-38 162.5 119 65.5
Sabra05G0055200 Salix brachista HOM05D002182 ORTHO05D004671 3.5e-38 161.8 168 51.8
Prupe.4G275500 Prunus persica HOM05D002182 ORTHO05D004671 7.7e-38 160.6 118 66.1
Gohir.A11G057700 Gossypium hirsutum HOM05D002182 ORTHO05D004671 2.9e-37 158.7 117 65.0
Sc16g0009510 Simmondsia chinensis HOM05D002182 ORTHO05D004671 5.0e-37 157.9 115 66.1
Cc07_g19240 Coffea canephora HOM05D002182 ORTHO05D004671 6.5e-37 157.5 116 69.0
CANSAT01G2275 Cannabis sativa HOM05D002182 ORTHO05D004671 1.1e-36 156.8 117 66.7
Hund21801 Selenicereus undatus HOM05D002182 ORTHO05D004671 1.1e-36 156.8 118 61.9
TAR376G0522 Trochodendron aralioides HOM05D002182 ORTHO05D004671 2.5e-36 155.6 121 64.5
RcHm_v2.0_Chr2g0122231 Rosa chinensis HOM05D002182 ORTHO05D004671 4.2e-36 154.8 117 65.0
Lj1g0008046 Lotus japonicus HOM05D002182 ORTHO05D004671 7.2e-36 154.1 123 61.0
Manes.13G078050 Manihot esculenta HOM05D002182 ORTHO05D004671 1.6e-35 152.9 118 66.9
Ca_16979_v3 Cicer arietinum L. HOM05D002182 ORTHO05D004671 2.8e-35 152.1 127 59.1
CsaV3_3G039390 Cucumis sativus L. HOM05D002182 ORTHO05D004671 8.0e-35 150.6 136 56.6
FvH4_1g24710 Fragaria vesca HOM05D002182 ORTHO05D004671 8.0e-35 150.6 117 61.5
TPR.G33581 Trifolium pratense HOM05D002182 ORTHO05D004671 8.0e-35 150.6 124 58.9
MELO3C009682.2 Cucumis melo HOM05D002182 ORTHO05D004671 2.0e-33 146.0 136 55.1
Eucgr.H05141 Eucalyptus grandis HOM05D002182 ORTHO05D004671 2.6e-33 145.6 120 60.8
Aqoxy5G02289 Aquilegia oxysepala HOM05D002182 ORTHO05D004671 4.4e-33 144.8 129 59.7
Migut.H00803 Erythranthe guttata HOM05D002182 ORTHO05D004671 4.4e-33 144.8 117 61.5
ATR1001G007 Amborella trichopoda HOM05D002182 ORTHO05D004671 9.8e-33 143.7 120 57.5
EL10Ac4g09621 Beta vulgaris HOM05D002182 ORTHO05D004671 4.9e-32 141.4 118 58.5
Nitab4.5_0001277g0010 Nicotiana tabacum HOM05D002182 ORTHO05D004671 4.9e-32 141.4 116 60.3
Medtr3g096640 Medicago truncatula HOM05D002182 ORTHO05D004671 1.4e-31 139.8 145 52.4
THA.LOC104818422 Tarenaya hassleriana HOM05D002182 ORTHO05D004671 7.0e-31 137.5 115 58.3
CAN.G163.2 Capsicum annuum HOM05D002182 ORTHO05D004671 9.2e-31 137.1 116 61.2
ECA248G2894 Erigeron canadensis HOM05D002182 ORTHO05D004671 2.7e-30 135.6 117 58.1
Sed0010212 Sechium edule HOM05D002182 ORTHO05D004671 2.7e-30 135.6 121 56.2
C02p63020 Brassica napus HOM05D002182 ORTHO05D017531 3.5e-30 135.2 132 52.3
AL8G41160 Arabidopsis lyrata HOM05D002182 ORTHO05D004671 4.5e-30 134.8 116 54.3
Sopen05g009910 Solanum pennellii HOM05D002182 ORTHO05D004671 1.7e-29 132.9 118 58.5
A02p43050 Brassica napus HOM05D002182 ORTHO05D004671 3.8e-29 131.7 122 53.3
BraA02t09226Z Brassica rapa HOM05D002182 ORTHO05D004671 5.0e-29 131.3 122 53.3
Sp2g26990 Schrenkiella parvula HOM05D002182 ORTHO05D004671 5.0e-29 131.3 124 51.6
Thhalv10003618m.g Eutrema salsugineum HOM05D002182 ORTHO05D004671 6.6e-29 131.0 125 51.2
BcaB07g29709 Brassica carinata HOM05D002182 ORTHO05D004671 8.6e-29 130.6 121 52.1
Nn5g28440 Nelumbo nucifera HOM05D002182 ORTHO05D004671 1.5e-28 129.8 122 53.3
Solyc05g014720.4 Solanum lycopersicum HOM05D002182 ORTHO05D004671 1.5e-28 129.8 116 55.2
HanXRQChr01g0016921 Helianthus annuus HOM05D002182 ORTHO05D004671 3.3e-28 128.6 121 54.5
Ah.06g191020 Amaranthus hybridus HOM05D002182 ORTHO05D004671 4.3e-28 128.3 129 49.6
AT5G63920 Arabidopsis thaliana HOM05D002182 ORTHO05D004671 7.3e-28 127.5 119 51.3
CDE09G0036 Ceratophyllum demersum HOM05D000218 ORTHO05D000125 1.6e-27 126.3 124 53.2
Carub.0008s2470 Capsella rubella HOM05D002182 ORTHO05D004671 2.1e-27 125.9 121 51.2
BcaC03g18232 Brassica carinata HOM05D002182 ORTHO05D004671 8.0e-27 124.0 122 50.8
MBI07_g43314_MAGBIO Magnolia biondii HOM05D002182 ORTHO05D004671 1.0e-26 123.6 109 55.0
PGR102G1182 Punica granatum HOM05D002182 ORTHO05D004671 1.2e-25 120.2 119 52.9
Aa31LG1G17970 Aethionema arabicum HOM05D002182 ORTHO05D004671 1.5e-25 119.8 111 55.0
Ah.06g191010 Amaranthus hybridus HOM05D002617 ORTHO05D009035 2.0e-25 119.4 124 49.2
Psat5g060640 Pisum sativum HOM05D002182 ORTHO05D004671 2.6e-25 119.0 96 60.4
FAN26G1134 Fragaria x ananassa HOM05D002182 ORTHO05D004671 1.6e-22 109.8 109 55.0
Zm00001eb005010 Zea mays HOM05D002182 ORTHO05D004671 1.3e-21 106.7 122 46.7
PSO384G2582 Papaver somniferum HOM05D002182 ORTHO05D004671 1.5e-20 103.2 135 46.7
HPP92_005917 Vanilla planifolia HOM05D002182 ORTHO05D004671 1.5e-20 103.2 118 49.2
Cpa.g.c33573 Carica papaya HOM05D002182 ORTHO05D017531 1.9e-20 102.8 76 69.7
PSO443G0075 Papaver somniferum HOM05D002182 ORTHO05D004671 1.9e-20 102.8 137 45.3
Os03g0165000 Oryza sativa ssp. japonica HOM05D002182 ORTHO05D004671 9.5e-20 100.5 129 42.6
SGA_v2.0_scaffold54G19590 Striga asiatica HOM05D002182 ORTHO05D004671 8.0e-19 97.4 105 52.4
Lj4C830T7 Lonicera japonica HOM05D002182 ORTHO05D004671 4.4e-17 91.7 80 60.0
AUR62006857 Chenopodium quinoa HOM05D002182 ORTHO05D004671 2.2e-16 89.4 76 57.9
Pp3c21_9710 Physcomitrium patens HOM05D002182 ORTHO05D004671 8.3e-16 87.4 147 39.5
Mapoly0113s0011 Marchantia polymorpha HOM05D002182 ORTHO05D004671 2.1e-14 82.8 135 37.0
SHI36070 Sapria himalayana HOM05D002182 ORTHO05D004671 3.3e-12 75.5 72 58.3
FAN19G2097 Fragaria x ananassa HOM05D002182 ORTHO05D004671 9.5e-12 73.9 38 84.2
Lsat_1_v5_gn_1_78841 Lactuca sativa HOM05D002182 ORTHO05D004671 2.1e-11 72.8 45 64.4
BolC3t18503H Brassica oleracea HOM05D002182 ORTHO05D017531 2.8e-11 72.4 77 49.4
unitig_62.g23375 Utricularia gibba HOM05D002182 ORTHO05D004671 2.3e-10 69.3 106 39.6
SEGI_24428 Sequoiadendron giganteum HOM05D002182 ORTHO05D017531 5.8e-09 64.7 116 42.2
AagrBONN_evm.TU.Sc2ySwM_228.5819 Anthoceros agrestis HOM05D002182 ORTHO05D004671 2.9e-08 62.4 52 50.0
A06p30540 Brassica napus HOM05D002182 ORTHO05D017531 2.4e-07 59.3 79 48.1
BraA06t26003Z Brassica rapa HOM05D002182 ORTHO05D017531 2.4e-07 59.3 79 48.1
FAN23G2071 Fragaria x ananassa HOM05D002182 ORTHO05D004671 4.6e-06 55.1 31 71.0
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 7.8e-06 54.3 138 32.6


User provided reference genes

Program Settings