Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 0.0e+00 1804.6 907 100.0
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 0.0e+00 1717.6 909 93.9
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1670.2 908 92.0
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1665.6 909 91.7
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1662.1 910 90.7
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1649.0 908 90.1
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1643.6 907 89.7
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1640.2 907 89.6
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 0.0e+00 1637.9 909 88.0
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 0.0e+00 1632.5 909 87.8
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1629.4 914 87.4
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1621.3 911 88.8
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1620.9 909 90.0
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 0.0e+00 1612.4 913 87.2
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 0.0e+00 1607.4 912 86.4
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 0.0e+00 1603.2 911 86.9
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1602.4 907 87.7
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 0.0e+00 1600.1 908 86.6
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1599.3 908 86.9
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1596.6 917 86.5
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 0.0e+00 1596.6 936 84.9
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 0.0e+00 1592.8 912 85.7
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1590.1 912 85.2
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1589.7 912 84.5
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1588.9 913 86.6
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1588.2 917 85.3
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1587.8 912 84.4
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1587.4 911 85.9
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1586.2 907 86.3
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 0.0e+00 1585.1 915 85.8
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1583.2 909 84.0
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 0.0e+00 1581.6 913 85.4
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 0.0e+00 1581.6 912 84.3
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1581.2 907 86.1
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1580.1 909 83.9
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1578.9 912 85.7
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 0.0e+00 1577.8 909 86.0
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1576.2 912 85.0
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1575.1 908 83.8
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1574.3 912 82.8
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 0.0e+00 1570.8 908 83.7
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1570.4 908 83.6
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 0.0e+00 1569.3 913 85.8
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1568.5 909 85.7
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1566.6 908 83.5
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1562.7 910 84.6
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1562.0 915 83.6
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 0.0e+00 1561.6 914 83.4
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 0.0e+00 1560.4 913 82.1
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 0.0e+00 1559.7 911 81.8
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 0.0e+00 1559.7 914 83.3
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1553.5 929 81.9
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1551.6 916 83.4
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 0.0e+00 1551.2 908 82.0
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1550.4 909 83.7
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 0.0e+00 1550.0 912 83.7
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1549.3 915 83.0
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1547.7 919 82.9
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1545.4 915 82.6
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 0.0e+00 1544.6 911 82.8
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1544.3 920 84.0
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 0.0e+00 1542.3 912 81.0
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1540.0 917 83.4
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1539.6 917 83.4
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1538.5 917 82.4
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1536.2 915 82.1
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 0.0e+00 1535.8 914 83.8
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 0.0e+00 1532.7 908 83.0
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 0.0e+00 1522.7 908 81.4
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1521.5 908 83.0
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 0.0e+00 1521.1 910 81.3
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1513.0 911 80.5
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1508.8 934 78.8
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 0.0e+00 1505.3 914 81.2
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1503.8 871 82.9
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 0.0e+00 1493.0 919 81.1
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1492.6 938 79.5
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 0.0e+00 1492.2 1137 68.8
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1490.3 908 81.6
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 0.0e+00 1486.1 910 81.5
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1481.1 912 81.1
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1479.2 912 80.8
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1474.5 934 79.1
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 0.0e+00 1471.8 916 78.8
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 0.0e+00 1471.4 921 79.5
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1471.1 934 78.7
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 0.0e+00 1471.1 934 78.7
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1469.9 912 78.7
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 0.0e+00 1469.1 923 79.1
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 0.0e+00 1469.1 907 79.6
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1467.6 829 86.0
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 0.0e+00 1460.7 918 79.2
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 0.0e+00 1458.4 924 78.7
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1453.7 863 82.5
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 0.0e+00 1450.6 912 77.6
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 0.0e+00 1449.5 929 78.0
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 0.0e+00 1447.6 909 78.4
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 0.0e+00 1444.9 907 76.5
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 0.0e+00 1444.5 930 77.8
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 0.0e+00 1442.2 830 83.3
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 0.0e+00 1417.1 916 75.7
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 0.0e+00 1415.6 909 77.3
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1415.2 907 74.9
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1409.4 908 78.3
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 0.0e+00 1397.9 906 74.8
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1390.2 907 74.2
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1386.7 911 75.7
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 0.0e+00 1355.5 879 75.5
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 0.0e+00 1337.8 912 70.4
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 0.0e+00 1334.3 786 83.5
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1334.3 738 86.3
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1295.8 726 87.1
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 0.0e+00 1266.9 915 68.1
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1216.4 739 78.1
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1209.9 686 87.2
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1204.5 933 65.6
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 0.0e+00 1153.3 950 61.4
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 0.0e+00 1147.5 906 65.5
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 0.0e+00 1136.7 940 59.1
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 0.0e+00 1123.2 916 60.8
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 0.0e+00 1102.0 674 80.7
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 1.6e-294 1016.1 619 79.3
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 2.9e-283 978.8 781 61.6
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 2.0e-276 956.1 621 76.2
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 8.1e-270 934.1 549 81.6
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.4e-266 922.5 561 83.1
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 2.2e-251 872.8 521 83.5
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 3.5e-241 839.0 599 73.6
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 3.9e-224 782.3 497 77.7
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 1.5e-210 737.3 388 90.5
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.1e-194 684.5 386 86.8
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 3.2e-181 639.8 354 85.3
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 1.1e-176 624.8 1023 38.0
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 9.9e-151 538.5 410 64.9
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 1.6e-148 531.2 411 62.8
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 5.1e-139 499.6 817 37.9
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 3.5e-132 476.9 480 57.1
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 6.9e-120 436.0 253 83.0
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 6.5e-118 429.5 223 90.1
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 4.2e-109 400.2 1052 28.3
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.8e-107 394.8 851 33.4
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 3.7e-105 387.1 279 67.7
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 3.1e-96 357.5 249 71.9
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 5.5e-93 346.7 253 65.6
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 5.5e-93 346.7 253 65.6
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 1.6e-92 345.1 365 47.1
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 2.5e-85 321.2 296 59.5
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 1.5e-61 242.3 148 77.0
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.7e-54 218.8 174 55.2
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 1.3e-49 202.6 149 62.4
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 1.3e-49 202.6 149 62.4
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 4.1e-48 197.6 118 80.5
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 1.0e-46 193.0 139 63.3
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 8.6e-46 189.9 238 49.2
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 2.5e-45 188.3 103 87.4
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 4.3e-45 187.6 154 60.4
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 2.1e-39 168.7 131 67.2
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 4.6e-39 167.5 99 78.8
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 1.5e-37 162.5 111 72.1
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 1.8e-35 155.6 134 51.5
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 5.3e-35 154.1 76 89.5
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.5e-34 152.5 76 88.2
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.5e-34 152.5 75 90.7
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 9.9e-34 149.8 76 86.8
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 4.9e-33 147.5 88 81.8
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 8.4e-33 146.7 114 69.3
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.4e-32 146.0 78 83.3
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.4e-32 146.0 74 87.8
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 1.5e-29 136.0 110 59.1
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 3.3e-29 134.8 78 83.3
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 9.6e-29 133.3 136 52.9
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 1.4e-27 129.4 123 53.7
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.5e-26 125.9 65 89.2
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 1.1e-24 119.8 121 51.2
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 9.3e-24 116.7 130 52.3
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 2.0e-18 99.0 280 26.4
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 1.2e-15 89.7 82 56.1
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 1.1e-13 83.2 56 71.4
CSS0019611 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D019539 9.0e-11 73.6 134 47.8
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 7.6e-10 70.5 46 63.0
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 3.2e-08 65.1 42 69.0
HanXRQChr15g0465621 Helianthus annuus HOM05D003791 ORTHO05D019539 3.2e-08 65.1 71 47.9
Pp3c9_21930 Physcomitrium patens HOM05D003791 ORTHO05D308914 5.5e-08 64.3 48 60.4


User provided reference genes

Program Settings