Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G1151 Ceratophyllum demersum HOM05D005565 ORTHO05D006950 7.4e-152 540.8 338 100.0
Aqoxy1G01543 Aquilegia oxysepala HOM05D005565 ORTHO05D006950 1.2e-77 294.3 401 53.6
RcHm_v2.0_Chr5g0015891 Rosa chinensis HOM05D005565 ORTHO05D006950 2.0e-72 276.9 394 50.5
TAR626G1362 Trochodendron aralioides HOM05D005565 ORTHO05D006950 1.3e-71 274.2 398 51.3
Prupe.4G089800 Prunus persica HOM05D005565 ORTHO05D006950 1.9e-70 270.4 395 50.1
Dinv06439 Davidia involucrata HOM05D005565 ORTHO05D006950 5.5e-70 268.9 389 51.4
MBI10_g00722_MAGBIO Magnolia biondii HOM05D005565 ORTHO05D006950 7.1e-70 268.5 394 57.1
Duzib192G0128 Durio zibethinus HOM05D005565 ORTHO05D006950 2.7e-69 266.5 391 53.5
Cpa.g.sc17.91 Carica papaya HOM05D005565 ORTHO05D006950 1.0e-68 264.6 400 53.2
Gorai.011G004100 Gossypium raimondii HOM05D005565 ORTHO05D006950 1.3e-68 264.2 392 51.8
QL05p061027 Quercus lobata HOM05D005565 ORTHO05D006950 1.3e-68 264.2 397 49.1
Thecc.06G001100 Theobroma cacao HOM05D005565 ORTHO05D006950 3.0e-68 263.1 389 52.2
Nn3g20239 Nelumbo nucifera HOM05D005565 ORTHO05D006950 3.9e-68 262.7 399 51.1
VMungo0251G3128 Vigna mungo HOM05D005565 ORTHO05D006950 8.7e-68 261.5 387 48.6
Gohir.A10G003700 Gossypium hirsutum HOM05D005565 ORTHO05D006950 1.1e-67 261.2 394 52.8
PSO675G3222 Papaver somniferum HOM05D005565 ORTHO05D006950 1.1e-67 261.2 404 53.0
HPP92_019891 Vanilla planifolia HOM05D005565 ORTHO05D006950 1.9e-67 260.4 394 50.0
FAN11G0475 Fragaria x ananassa HOM05D005565 ORTHO05D006950 7.4e-67 258.5 394 49.0
Atru.chr10.872 Acer truncatum HOM05D005565 ORTHO05D006950 9.6e-67 258.1 394 51.5
FAN21G3355 Fragaria x ananassa HOM05D005565 ORTHO05D006950 1.3e-66 257.7 391 47.3
Cfa000824 Carpinus fangiana HOM05D005565 ORTHO05D006950 1.6e-66 257.3 390 49.5
Sc17g0004650 Simmondsia chinensis HOM05D005565 ORTHO05D006950 2.8e-66 256.5 403 51.4
FvH4_3g10030 Fragaria vesca HOM05D005565 ORTHO05D006950 4.8e-66 255.8 394 48.7
FAN16G1178 Fragaria x ananassa HOM05D005565 ORTHO05D006950 4.8e-66 255.8 398 49.7
CsaV3_6G052300 Cucumis sativus L. HOM05D005565 ORTHO05D006950 8.2e-66 255.0 386 48.2
MD05G1274000 Malus domestica HOM05D005565 ORTHO05D006950 8.2e-66 255.0 398 47.7
CANSAT35G0106 Cannabis sativa HOM05D005565 ORTHO05D006950 1.4e-65 254.2 390 47.4
Aa31LG6G11740 Aethionema arabicum HOM05D005565 ORTHO05D006950 1.8e-65 253.8 390 50.3
PSO541G0264 Papaver somniferum HOM05D005565 ORTHO05D006950 2.4e-65 253.4 404 52.2
Glyma.07G224200 Glycine max HOM05D005565 ORTHO05D006950 4.0e-65 252.7 393 48.1
Phvul.002G100900 Phaseolus vulgaris HOM05D005565 ORTHO05D006950 6.9e-65 251.9 386 47.2
Lj1A1162G46 Lonicera japonica HOM05D005565 ORTHO05D006950 1.2e-64 251.1 392 50.8
TWI53G0754 Tripterygium wilfordii HOM05D005565 ORTHO05D006950 1.5e-64 250.8 389 51.7
CiPaw.10G085900 Carya illinoinensis HOM05D005565 ORTHO05D006950 2.0e-64 250.4 391 49.9
CSS0026797 Camellia sinensis var. sinensis HOM05D005565 ORTHO05D006950 3.4e-64 249.6 394 55.8
Zm00001eb315350 Zea mays HOM05D005565 ORTHO05D006950 3.4e-64 249.6 389 45.8
Sp1g26320 Schrenkiella parvula HOM05D005565 ORTHO05D006950 7.6e-64 248.4 390 47.7
CANSAT35G0536 Cannabis sativa HOM05D005565 ORTHO05D006950 1.0e-63 248.1 390 46.7
Actinidia13472 Actinidia chinensis HOM05D005565 ORTHO05D006950 2.2e-63 246.9 391 47.8
AT1G30480 Arabidopsis thaliana HOM05D005565 ORTHO05D006950 2.9e-63 246.5 396 46.7
Carub.0001s2870 Capsella rubella HOM05D005565 ORTHO05D006950 8.4e-63 245.0 397 46.3
MELO3C007079.2 Cucumis melo HOM05D005565 ORTHO05D006950 1.1e-62 244.6 406 47.8
Zm00001eb376390 Zea mays HOM05D005565 ORTHO05D006950 1.1e-62 244.6 389 43.7
ClCG01G025100 Citrullus lanatus HOM05D005565 ORTHO05D006950 1.9e-62 243.8 388 50.5
PGR083G1318 Punica granatum HOM05D005565 ORTHO05D006950 1.9e-62 243.8 398 52.8
THA.LOC104812687 Tarenaya hassleriana HOM05D005565 ORTHO05D006950 3.2e-62 243.0 389 48.3
SEGI_17605 Sequoiadendron giganteum HOM05D005565 ORTHO05D006950 7.1e-62 241.9 413 48.2
A09p35980 Brassica napus HOM05D005565 ORTHO05D006950 9.3e-62 241.5 368 50.3
BraA09t39122Z Brassica rapa HOM05D005565 ORTHO05D006950 9.3e-62 241.5 368 50.3
arahy.Tifrunner.gnm1.ann1.V3UUHR Arachis hypogaea HOM05D005565 ORTHO05D006950 1.2e-61 241.1 406 49.0
Thhalv10007861m.g Eutrema salsugineum HOM05D005565 ORTHO05D006950 1.6e-61 240.7 402 48.5
Rhsim13G0120300 Rhododendron simsii HOM05D005565 ORTHO05D006950 1.6e-61 240.7 383 49.1
CARHR029890 Cardamine hirsuta HOM05D005565 ORTHO05D006950 2.1e-61 240.4 389 45.5
Lsat_1_v5_gn_1_117781 Lactuca sativa HOM05D005565 ORTHO05D006950 2.1e-61 240.4 405 49.6
Medtr4g083380 Medicago truncatula HOM05D005565 ORTHO05D006950 2.1e-61 240.4 398 47.2
arahy.Tifrunner.gnm1.ann1.59WFQY Arachis hypogaea HOM05D005565 ORTHO05D006950 6.0e-61 238.8 406 48.8
ATR0165G027 Amborella trichopoda HOM05D005565 ORTHO05D006950 1.0e-60 238.0 416 51.0
C03p76800 Brassica napus HOM05D005565 ORTHO05D006950 1.0e-60 238.0 388 47.7
Ca_18788_v3 Cicer arietinum L. HOM05D005565 ORTHO05D006950 1.0e-60 238.0 394 41.6
A08p24410 Brassica napus HOM05D005565 ORTHO05D006950 1.8e-60 237.3 391 46.3
vmacro03395 Vaccinium macrocarpon HOM05D005565 ORTHO05D006950 1.8e-60 237.3 393 46.8
DCAR_027864 Daucus carota HOM05D005565 ORTHO05D006950 1.1e-59 234.6 397 45.8
SHI20681 Sapria himalayana HOM05D005565 ORTHO05D006950 2.5e-59 233.4 388 44.3
Potri.001G372600 Populus trichocarpa HOM05D005565 ORTHO05D006950 2.1e-58 230.3 399 42.4
MD10G1253700 Malus domestica HOM05D005565 ORTHO05D006950 2.8e-58 229.9 311 47.6
Psat7g132960 Pisum sativum HOM05D005565 ORTHO05D006950 2.8e-58 229.9 386 44.8
MSTRG.14795 Avicennia marina HOM05D005565 ORTHO05D006950 6.3e-58 228.8 403 50.9
Lj4g0020694 Lotus japonicus HOM05D005565 ORTHO05D006950 6.3e-58 228.8 398 44.5
BcaNung05265 Brassica carinata HOM05D005565 ORTHO05D006950 1.1e-57 228.0 362 43.6
AUR62042519 Chenopodium quinoa HOM05D005565 ORTHO05D006950 1.1e-57 228.0 343 49.0
Sed0002078 Sechium edule HOM05D005565 ORTHO05D006950 1.8e-57 227.3 386 47.7
Oeu041100.1 Olea europaea HOM05D005565 ORTHO05D006950 2.4e-57 226.9 403 49.1
BcaNung05264 Brassica carinata HOM05D005565 ORTHO05D006950 3.1e-57 226.5 384 51.3
BolC3t19934H Brassica oleracea HOM05D005565 ORTHO05D006950 4.1e-57 226.1 384 51.3
Potri.011G098100 Populus trichocarpa HOM05D005565 ORTHO05D006950 6.9e-57 225.3 339 46.3
Glyma.20G024100 Glycine max HOM05D005565 ORTHO05D006950 9.0e-57 224.9 399 44.1
HanXRQChr01g0003371 Helianthus annuus HOM05D005565 ORTHO05D006950 9.0e-57 224.9 410 41.0
EL10Ac8g19576 Beta vulgaris HOM05D005565 ORTHO05D006950 1.5e-56 224.2 410 49.8
Hma1.2p1_0333F.1_g128300 Hydrangea macrophylla HOM05D005565 ORTHO05D006950 2.6e-56 223.4 407 46.9
Sabra11G0084800 Salix brachista HOM05D005565 ORTHO05D006950 2.6e-56 223.4 427 44.0
ECA240G3173 Erigeron canadensis HOM05D005565 ORTHO05D006950 4.5e-56 222.6 395 49.4
Manes.06G055100 Manihot esculenta HOM05D005565 ORTHO05D006950 5.9e-56 222.2 388 47.9
Cc09_g08070 Coffea canephora HOM05D005565 ORTHO05D006950 7.6e-56 221.9 409 48.2
Sabra11G0091000 Salix brachista HOM05D005565 ORTHO05D006950 7.6e-56 221.9 427 43.8
COL.COLO4_26828 Corchorus olitorius HOM05D005565 ORTHO05D006950 2.9e-55 219.9 390 40.3
Eucgr.D00186 Eucalyptus grandis HOM05D005565 ORTHO05D006950 8.5e-55 218.4 400 41.5
Manes.14G122600 Manihot esculenta HOM05D005565 ORTHO05D006950 2.1e-53 213.8 382 41.6
Pp3c2_18610 Physcomitrium patens HOM05D005565 ORTHO05D006950 6.1e-53 212.2 419 44.2
Os01g0526100 Oryza sativa ssp. japonica HOM05D005565 ORTHO05D006950 7.9e-53 211.8 320 43.1
CAN.G954.26 Capsicum annuum HOM05D005565 ORTHO05D006950 1.0e-52 211.5 395 45.3
SGA_v2.0_scaffold1G00240 Striga asiatica HOM05D005565 ORTHO05D006950 3.9e-52 209.5 402 45.3
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 8.7e-52 208.4 393 42.2
CDE10G1222 Ceratophyllum demersum HOM05D005565 ORTHO05D006950 1.1e-51 208.0 336 48.2
Sabra16G0245100 Salix brachista HOM05D005565 ORTHO05D006950 3.3e-51 206.5 454 36.8
Migut.H01333 Erythranthe guttata HOM05D005565 ORTHO05D006950 4.3e-51 206.1 396 46.5
Oeu015183.1 Olea europaea HOM05D005565 ORTHO05D006950 5.7e-51 205.7 402 47.8
AL1G44510 Arabidopsis lyrata HOM05D005565 ORTHO05D006950 1.8e-49 200.7 399 46.1
Peaxi162Scf00670g00348 Petunia axillaris HOM05D005565 ORTHO05D006950 1.8e-49 200.7 406 47.3
Mapoly0023s0048 Marchantia polymorpha HOM05D005565 ORTHO05D006950 2.6e-48 196.8 450 42.4
Sopen02g018950 Solanum pennellii HOM05D005565 ORTHO05D006950 2.6e-48 196.8 410 40.2
PGSC0003DMG400021191 Solanum tuberosum HOM05D005565 ORTHO05D006950 1.7e-47 194.1 406 40.1
Solyc02g069790.3 Solanum lycopersicum HOM05D005565 ORTHO05D006950 6.5e-47 192.2 412 39.8
SGA_v2.0_scaffold223G42860 Striga asiatica HOM05D005565 ORTHO05D006950 8.5e-47 191.8 399 44.1
Lalb_Chr05g0219831 Lupinus albus HOM05D005565 ORTHO05D006950 2.7e-45 186.8 336 39.0
FAN25G2018 Fragaria x ananassa HOM05D005565 ORTHO05D006950 3.6e-45 186.4 99 87.9
GSVIVG01021628001 Vitis vinifera HOM05D005565 ORTHO05D006950 1.4e-44 184.5 99 87.9
BcaB07g32657 Brassica carinata HOM05D005565 ORTHO05D006950 2.0e-43 180.6 114 77.2
C05p29480 Brassica napus HOM05D005565 ORTHO05D006950 2.0e-43 180.6 114 77.2
BolC5t31678H Brassica oleracea HOM05D005565 ORTHO05D006950 2.0e-43 180.6 114 77.2
Haze_05809 Corylus avellana HOM05D005565 ORTHO05D006950 7.4e-43 178.7 97 86.6
AagrBONN_evm.TU.Sc2ySwM_228.4814 Anthoceros agrestis HOM05D005565 ORTHO05D006950 1.4e-41 174.5 372 40.1
Hma1.2p1_0333F.1_g128290 Hydrangea macrophylla HOM05D005565 ORTHO05D006950 9.1e-41 171.8 97 83.5
BraA08t34396Z Brassica rapa HOM05D005565 ORTHO05D006950 1.2e-40 171.4 112 75.9
SMO351G0200 Selaginella moellendorffii HOM05D005565 ORTHO05D006950 2.6e-40 170.2 305 44.3
Nitab4.5_0004596g0030 Nicotiana tabacum HOM05D005565 ORTHO05D006950 3.4e-40 169.9 102 76.5
BcaC01g00198 Brassica carinata HOM05D005565 ORTHO05D006950 7.7e-40 168.7 112 75.0
Nitab4.5_0002719g0090 Nicotiana tabacum HOM05D005565 ORTHO05D006950 1.0e-39 168.3 114 71.1
BcaB07g32658 Brassica carinata HOM05D005565 ORTHO05D006950 1.7e-39 167.5 97 79.4
CBR_g29718 Chara braunii HOM05D005565 ORTHO05D006950 2.1e-37 160.6 463 37.4
BcaB07g32683 Brassica carinata HOM05D005565 ORTHO05D006950 9.7e-35 151.8 350 38.9
C07p15100 Brassica napus HOM05D005565 ORTHO05D006950 1.8e-33 147.5 98 75.5
Cre11.g467591 Chlamydomonas reinhardtii HOM05D005565 ORTHO05D006950 4.8e-26 122.9 95 61.1
Haze_26712 Corylus avellana HOM05D005565 ORTHO05D006950 1.4e-25 121.3 116 55.2
MCO12G324 Micromonas commoda HOM05D005565 ORTHO05D006950 1.8e-25 120.9 95 55.8
vmacro03441 Vaccinium macrocarpon HOM05D005565 ORTHO05D006950 5.9e-24 115.9 66 84.8
MBI18_g10581_MAGBIO Magnolia biondii HOM05D005565 ORTHO05D006950 3.2e-22 110.2 314 39.5
Gohir.D10G003700 Gossypium hirsutum HOM05D005565 ORTHO05D006950 1.2e-19 101.7 296 41.9
Haze_05807 Corylus avellana HOM05D005565 ORTHO05D006950 4.8e-18 96.3 314 36.9
SGA_v2.0_scaffold22G09881 Striga asiatica HOM05D005565 ORTHO05D006950 4.8e-18 96.3 99 49.5
CBR_g23080 Chara braunii HOM05D005565 ORTHO05D006950 1.4e-17 94.7 133 41.4
Dinv23083 Davidia involucrata HOM05D005565 ORTHO05D006950 1.8e-17 94.4 120 49.2
TPR.G34068 Trifolium pratense HOM05D005565 ORTHO05D006950 5.9e-16 89.4 186 47.8
PRCOL_00005056 Prasinoderma coloniale HOM05D005565 ORTHO05D006950 1.6e-13 81.3 102 43.1
BcaC01g00197 Brassica carinata HOM05D005565 ORTHO05D006950 2.0e-11 74.3 219 49.3
CBR_g28574 Chara braunii HOM05D000409 ORTHO05D001956 4.5e-08 63.2 111 36.0
Ciclev10018985m.g Citrus clementina HOM05D000565 ORTHO05D003973 7.8e-08 62.4 119 39.5
SMO201G0011 Selaginella moellendorffii HOM05D001563 ORTHO05D001956 2.3e-07 60.8 75 42.7
CBR_g28575 Chara braunii HOM05D001563 ORTHO05D001956 2.9e-07 60.5 97 34.0
CBR_g28571 Chara braunii HOM05D001563 ORTHO05D001956 5.0e-07 59.7 95 34.7
Mapoly0038s0101 Marchantia polymorpha HOM05D001563 ORTHO05D001956 1.1e-06 58.5 79 36.7
SEGI_21623 Sequoiadendron giganteum HOM05D001563 ORTHO05D001956 1.1e-06 58.5 79 36.7
SGA_v2.0_scaffold2G01114 Striga asiatica HOM05D001563 ORTHO05D001956 2.5e-06 57.4 79 32.9
HanXRQChr09g0262121 Helianthus annuus HOM05D001563 ORTHO05D001956 3.3e-06 57.0 79 34.2
HanXRQChr11g0324861 Helianthus annuus HOM05D001563 ORTHO05D001956 3.3e-06 57.0 75 34.7
Lsat_1_v5_gn_4_153381 Lactuca sativa HOM05D001563 ORTHO05D012319 3.3e-06 57.0 80 33.8
SEGI_35596 Sequoiadendron giganteum HOM05D001563 ORTHO05D001956 3.3e-06 57.0 76 39.5
SMO348G0102 Selaginella moellendorffii HOM05D001563 ORTHO05D001956 4.3e-06 56.6 109 31.2
Actinidia36546 Actinidia chinensis HOM05D001563 ORTHO05D001956 5.6e-06 56.2 79 34.2
Dinv26814 Davidia involucrata HOM05D001563 ORTHO05D001956 5.6e-06 56.2 91 30.8
ECA232G1424 Erigeron canadensis HOM05D001563 ORTHO05D001956 5.6e-06 56.2 79 34.2
SEGI_22204 Sequoiadendron giganteum HOM05D001563 ORTHO05D001956 5.6e-06 56.2 95 32.6
AagrBONN_evm.TU.Sc2ySwM_117.747 Anthoceros agrestis HOM05D001563 ORTHO05D001956 7.3e-06 55.8 79 35.4
Lalb_Chr01g0000001 Lupinus albus HOM05D001563 ORTHO05D001956 7.3e-06 55.8 95 30.5
Oeu007445.5 Olea europaea HOM05D001563 ORTHO05D001956 9.5e-06 55.5 95 31.6
SGA_v2.0_scaffold221G42757 Striga asiatica HOM05D001563 ORTHO05D001956 9.5e-06 55.5 91 30.8


User provided reference genes

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