Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0788 Ceratophyllum demersum HOM05D002182 ORTHO05D004671 6.6e-105 384.0 193 100.0
CDE06G0450 Ceratophyllum demersum HOM05D005484 ORTHO05D006761 8.3e-23 111.3 66 92.4
Lj4C830T7 Lonicera japonica HOM05D002182 ORTHO05D004671 2.8e-18 96.3 148 41.9
Migut.H00803 Erythranthe guttata HOM05D002182 ORTHO05D004671 1.8e-17 93.6 61 68.9
Oeu050090.2 Olea europaea HOM05D002182 ORTHO05D004671 3.1e-17 92.8 62 66.1
AUR62006857 Chenopodium quinoa HOM05D002182 ORTHO05D004671 1.5e-16 90.5 149 35.6
Dinv35485 Davidia involucrata HOM05D002182 ORTHO05D004671 1.5e-16 90.5 85 52.9
SGA_v2.0_scaffold54G19590 Striga asiatica HOM05D002182 ORTHO05D004671 1.5e-16 90.5 90 50.0
EL10Ac4g09621 Beta vulgaris HOM05D002182 ORTHO05D004671 3.4e-16 89.4 172 33.7
Sc16g0009510 Simmondsia chinensis HOM05D002182 ORTHO05D004671 5.8e-16 88.6 173 34.1
GSVIVG01026461001 Vitis vinifera HOM05D002182 ORTHO05D004671 9.8e-16 87.8 173 38.2
Cc07_g19240 Coffea canephora HOM05D002182 ORTHO05D004671 1.7e-15 87.0 172 33.7
Sopen05g009910 Solanum pennellii HOM05D002182 ORTHO05D004671 1.7e-15 87.0 172 35.5
Solyc05g014730.1 Solanum lycopersicum HOM05D002182 ORTHO05D004671 3.7e-15 85.9 62 62.9
FAN19G2097 Fragaria x ananassa HOM05D002182 ORTHO05D004671 4.9e-15 85.5 129 42.6
Lj1g0008046 Lotus japonicus HOM05D002182 ORTHO05D004671 4.9e-15 85.5 173 34.7
Nitab4.5_0000120g0160 Nicotiana tabacum HOM05D002182 ORTHO05D004671 4.9e-15 85.5 68 57.4
TAR376G0522 Trochodendron aralioides HOM05D002182 ORTHO05D004671 4.9e-15 85.5 61 65.6
Aqoxy5G02289 Aquilegia oxysepala HOM05D002182 ORTHO05D004671 1.1e-14 84.3 176 34.7
Ca_16979_v3 Cicer arietinum L. HOM05D002182 ORTHO05D004671 1.4e-14 84.0 61 62.3
COL.COLO4_35815 Corchorus olitorius HOM05D002182 ORTHO05D004671 1.4e-14 84.0 61 63.9
Phvul.009G154850 Phaseolus vulgaris HOM05D002182 ORTHO05D004671 1.4e-14 84.0 90 47.8
TPR.G33581 Trifolium pratense HOM05D002182 ORTHO05D004671 1.4e-14 84.0 61 62.3
Actinidia20028 Actinidia chinensis HOM05D002182 ORTHO05D004671 1.9e-14 83.6 173 36.4
Psat5g060640 Pisum sativum HOM05D002182 ORTHO05D004671 1.9e-14 83.6 173 34.1
arahy.Tifrunner.gnm1.ann1.XVSB6Y Arachis hypogaea HOM05D002182 ORTHO05D004671 4.1e-14 82.4 63 58.7
BcaB07g29709 Brassica carinata HOM05D002182 ORTHO05D004671 5.4e-14 82.0 91 45.1
Lalb_Chr11g0068591 Lupinus albus HOM05D002182 ORTHO05D004671 5.4e-14 82.0 61 62.3
Medtr3g096640 Medicago truncatula HOM05D002182 ORTHO05D004671 5.4e-14 82.0 61 59.0
Prupe.4G275500 Prunus persica HOM05D002182 ORTHO05D004671 5.4e-14 82.0 173 34.7
CAN.G163.2 Capsicum annuum HOM05D002182 ORTHO05D004671 7.1e-14 81.6 172 34.9
CiPaw.04G079900 Carya illinoinensis HOM05D002182 ORTHO05D004671 7.1e-14 81.6 155 36.1
QL10p041326 Quercus lobata HOM05D002182 ORTHO05D004671 9.2e-14 81.3 85 48.2
AL8G41160 Arabidopsis lyrata HOM05D002182 ORTHO05D004671 1.2e-13 80.9 91 42.9
arahy.Tifrunner.gnm1.ann1.K5KUZ3 Arachis hypogaea HOM05D002182 ORTHO05D004671 1.2e-13 80.9 61 59.0
Nn5g28440 Nelumbo nucifera HOM05D002182 ORTHO05D004671 1.2e-13 80.9 173 34.1
Gohir.A11G057700 Gossypium hirsutum HOM05D002182 ORTHO05D004671 1.6e-13 80.5 61 63.9
Gohir.D11G061900 Gossypium hirsutum HOM05D002182 ORTHO05D004671 1.6e-13 80.5 61 63.9
Gorai.007G066700 Gossypium raimondii HOM05D002182 ORTHO05D004671 1.6e-13 80.5 61 63.9
CSS0041549 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D004671 2.1e-13 80.1 161 32.3
ClCG10G017010 Citrullus lanatus HOM05D002182 ORTHO05D004671 2.1e-13 80.1 61 57.4
Carub.0008s2470 Capsella rubella HOM05D002182 ORTHO05D004671 2.7e-13 79.7 173 32.9
MELO3C009682.2 Cucumis melo HOM05D002182 ORTHO05D004671 2.7e-13 79.7 61 59.0
FAN26G0537 Fragaria x ananassa HOM05D002182 ORTHO05D004671 2.7e-13 79.7 75 53.3
BcaC03g18232 Brassica carinata HOM05D002182 ORTHO05D004671 3.5e-13 79.3 173 31.8
A02p43050 Brassica napus HOM05D002182 ORTHO05D004671 3.5e-13 79.3 91 42.9
Duzib264G0915 Durio zibethinus HOM05D002182 ORTHO05D004671 3.5e-13 79.3 173 35.8
FvH4_1g24710 Fragaria vesca HOM05D002182 ORTHO05D004671 3.5e-13 79.3 91 46.2
AT5G63920 Arabidopsis thaliana HOM05D002182 ORTHO05D004671 6.0e-13 78.6 173 30.6
CsaV3_3G039390 Cucumis sativus L. HOM05D002182 ORTHO05D004671 6.0e-13 78.6 61 57.4
Lsat_1_v5_gn_1_78841 Lactuca sativa HOM05D002182 ORTHO05D004671 7.8e-13 78.2 69 47.8
Thecc.01G137400 Theobroma cacao HOM05D002182 ORTHO05D004671 7.8e-13 78.2 173 33.5
TWI79G1433 Tripterygium wilfordii HOM05D002182 ORTHO05D004671 7.8e-13 78.2 173 31.8
VMungo1309G0220 Vigna mungo HOM05D002182 ORTHO05D004671 1.7e-12 77.0 90 45.6
ECA248G2894 Erigeron canadensis HOM05D002182 ORTHO05D004671 2.3e-12 76.6 61 50.8
Ah.06g191020 Amaranthus hybridus HOM05D002182 ORTHO05D004671 3.9e-12 75.9 175 32.0
Potri.005G067100 Populus trichocarpa HOM05D002182 ORTHO05D004671 3.9e-12 75.9 61 57.4
Sabra05G0055200 Salix brachista HOM05D002182 ORTHO05D004671 3.9e-12 75.9 61 57.4
Aa31LG1G17970 Aethionema arabicum HOM05D002182 ORTHO05D004671 5.1e-12 75.5 109 39.4
MD15G1134700 Malus domestica HOM05D002182 ORTHO05D004671 5.1e-12 75.5 173 31.8
Thhalv10003618m.g Eutrema salsugineum HOM05D002182 ORTHO05D004671 6.6e-12 75.1 91 41.8
Ah.06g191010 Amaranthus hybridus HOM05D002617 ORTHO05D009035 1.1e-11 74.3 175 31.4
Glyma.06G155600 Glycine max HOM05D002182 ORTHO05D004671 1.1e-11 74.3 61 59.0
RcHm_v2.0_Chr2g0122231 Rosa chinensis HOM05D002182 ORTHO05D004671 1.1e-11 74.3 61 55.7
Atru.chr4.980 Acer truncatum HOM05D002182 ORTHO05D004671 1.5e-11 73.9 153 36.6
Cfa002178 Carpinus fangiana HOM05D002182 ORTHO05D004671 1.5e-11 73.9 85 44.7
PSO443G0075 Papaver somniferum HOM05D002182 ORTHO05D004671 1.5e-11 73.9 61 55.7
Sp2g26990 Schrenkiella parvula HOM05D002182 ORTHO05D004671 1.9e-11 73.6 173 30.1
HanXRQChr01g0016921 Helianthus annuus HOM05D002182 ORTHO05D004671 2.5e-11 73.2 63 49.2
PSO384G2582 Papaver somniferum HOM05D002182 ORTHO05D004671 3.3e-11 72.8 173 30.1
BraA02t09226Z Brassica rapa HOM05D002182 ORTHO05D004671 7.3e-11 71.6 100 39.0
HPP92_005922 Vanilla planifolia HOM05D002182 ORTHO05D004671 9.5e-11 71.2 62 51.6
ATR1001G007 Amborella trichopoda HOM05D002182 ORTHO05D004671 2.1e-10 70.1 60 53.3
Pp3c21_9710 Physcomitrium patens HOM05D002182 ORTHO05D004671 2.1e-10 70.1 60 55.0
AagrBONN_evm.TU.Sc2ySwM_228.5819 Anthoceros agrestis HOM05D002182 ORTHO05D004671 2.8e-10 69.7 61 55.7
Eucgr.H05141 Eucalyptus grandis HOM05D002182 ORTHO05D004671 2.8e-10 69.7 60 51.7
SEGI_16368 Sequoiadendron giganteum HOM05D002182 ORTHO05D004671 2.8e-10 69.7 48 62.5
CANSAT01G2275 Cannabis sativa HOM05D002182 ORTHO05D004671 3.6e-10 69.3 203 29.6
DCAR_023889 Daucus carota HOM05D002182 ORTHO05D004671 3.6e-10 69.3 49 59.2
PGR102G1182 Punica granatum HOM05D002182 ORTHO05D004671 3.6e-10 69.3 61 52.5
unitig_62.g23374 Utricularia gibba HOM05D002182 ORTHO05D004671 8.1e-10 68.2 54 55.6
Ciclev10003112m.g Citrus clementina HOM05D002182 ORTHO05D004671 2.3e-09 66.6 61 54.1
Medtr2g084565 Medicago truncatula HOM05D005484 ORTHO05D006761 6.8e-09 65.1 68 52.9
arahy.Tifrunner.gnm1.ann1.TP1LAH Arachis hypogaea HOM05D005484 ORTHO05D006761 8.9e-09 64.7 102 39.2
Hund21801 Selenicereus undatus HOM05D002182 ORTHO05D004671 8.9e-09 64.7 49 55.1
Glyma.12G180000 Glycine max HOM05D005484 ORTHO05D006761 2.0e-08 63.5 40 72.5
Glyma.13G320800 Glycine max HOM05D005484 ORTHO05D006761 2.0e-08 63.5 40 72.5
MBI01_g19332_MAGBIO Magnolia biondii HOM05D002731 ORTHO05D003073 2.0e-08 63.5 37 83.8
Sc06g0008870 Simmondsia chinensis HOM05D005484 ORTHO05D006761 2.0e-08 63.5 37 78.4
Os03g0684400 Oryza sativa ssp. japonica HOM05D005484 ORTHO05D006761 2.6e-08 63.2 37 81.1
Zm00001eb005010 Zea mays HOM05D002182 ORTHO05D004671 2.6e-08 63.2 92 38.0
arahy.Tifrunner.gnm1.ann1.9XN6EE Arachis hypogaea HOM05D005484 ORTHO05D006761 3.4e-08 62.8 102 39.2
Ca_01692_v3 Cicer arietinum L. HOM05D005484 ORTHO05D006761 3.4e-08 62.8 66 50.0
Ca_30938_v3 Cicer arietinum L. HOM05D005484 ORTHO05D006761 3.4e-08 62.8 66 50.0
Manes.13G078050 Manihot esculenta HOM05D002182 ORTHO05D004671 3.4e-08 62.8 167 31.1
Mapoly0113s0011 Marchantia polymorpha HOM05D002182 ORTHO05D004671 3.4e-08 62.8 88 37.5
VMungo1080G0291 Vigna mungo HOM05D005484 ORTHO05D006761 3.4e-08 62.8 40 72.5
Zm00001eb053210 Zea mays HOM05D005484 ORTHO05D006761 3.4e-08 62.8 68 52.9
Nitab4.5_0001277g0030 Nicotiana tabacum HOM05D002182 ORTHO05D004671 4.4e-08 62.4 48 58.3
Os03g0165000 Oryza sativa ssp. japonica HOM05D002182 ORTHO05D004671 4.4e-08 62.4 60 51.7
Nn2g13932 Nelumbo nucifera HOM05D005484 ORTHO05D006761 5.8e-08 62.0 37 75.7
Psat5g253880 Pisum sativum HOM05D005484 ORTHO05D006761 5.8e-08 62.0 36 77.8
SMO114G0082 Selaginella moellendorffii HOM05D002182 ORTHO05D004671 5.8e-08 62.0 51 54.9
TPR.G32384 Trifolium pratense HOM05D005484 ORTHO05D006761 5.8e-08 62.0 53 60.4
COL.COLO4_19256 Corchorus olitorius HOM05D005484 ORTHO05D006761 7.6e-08 61.6 37 75.7
Phvul.005G128800 Phaseolus vulgaris HOM05D005484 ORTHO05D006761 7.6e-08 61.6 63 55.6
vmacro12745 Vaccinium macrocarpon HOM05D002182 ORTHO05D004671 7.6e-08 61.6 46 58.7
MBI07_g47060_MAGBIO Magnolia biondii HOM05D002182 ORTHO05D004671 9.9e-08 61.2 49 55.1
Manes.11G155200 Manihot esculenta HOM05D005484 ORTHO05D006761 9.9e-08 61.2 40 70.0
CBR_g74 Chara braunii HOM05D002182 ORTHO05D004671 1.3e-07 60.8 60 45.0
Lalb_Chr22g0350511 Lupinus albus HOM05D005484 ORTHO05D006761 1.3e-07 60.8 37 73.0
CiPaw.14G105100 Carya illinoinensis HOM05D005484 ORTHO05D006761 1.7e-07 60.5 37 73.0
Lj3g0024733 Lotus japonicus HOM05D005484 ORTHO05D006761 1.7e-07 60.5 69 49.3
QL01p014158 Quercus lobata HOM05D005484 ORTHO05D006761 1.7e-07 60.5 37 73.0
Sed0010212 Sechium edule HOM05D002182 ORTHO05D004671 1.7e-07 60.5 163 32.5
AUR62000512 Chenopodium quinoa HOM05D002182 ORTHO05D004671 2.2e-07 60.1 262 24.4
Ciclev10028468m.g Citrus clementina HOM05D005484 ORTHO05D006761 2.2e-07 60.1 37 73.0
Oeu026994.1 Olea europaea HOM05D005484 ORTHO05D006761 2.2e-07 60.1 66 51.5
Atru.chr3.3424 Acer truncatum HOM05D005484 ORTHO05D006761 2.9e-07 59.7 60 53.3
ATR0665G031 Amborella trichopoda HOM05D005484 ORTHO05D006761 2.9e-07 59.7 37 75.7
CANSAT64G0117 Cannabis sativa HOM05D005484 ORTHO05D006761 2.9e-07 59.7 55 56.4
CANSAT64G0716 Cannabis sativa HOM05D005484 ORTHO05D006761 2.9e-07 59.7 55 56.4
Eucgr.J00410 Eucalyptus grandis HOM05D005484 ORTHO05D006761 2.9e-07 59.7 68 52.9
SGA_v2.0_scaffold466G52019 Striga asiatica HOM05D005484 ORTHO05D006761 2.9e-07 59.7 93 40.9
Actinidia07200 Actinidia chinensis HOM05D005484 ORTHO05D006761 3.7e-07 59.3 37 73.0
THA.LOC104799526 Tarenaya hassleriana HOM05D005484 ORTHO05D006761 3.7e-07 59.3 37 70.3
TAR623G0584 Trochodendron aralioides HOM05D005484 ORTHO05D006761 3.7e-07 59.3 124 37.1
GSVIVG01031426001 Vitis vinifera HOM05D005484 ORTHO05D006761 3.7e-07 59.3 107 39.3
Cfa010112 Carpinus fangiana HOM05D005484 ORTHO05D006761 4.9e-07 58.9 37 73.0
FAN23G2071 Fragaria x ananassa HOM05D002182 ORTHO05D004671 4.9e-07 58.9 164 33.5
SalBow3G0456 Salvia bowleyana HOM05D005484 ORTHO05D006761 4.9e-07 58.9 37 73.0
Gohir.D13G228400 Gossypium hirsutum HOM05D005484 ORTHO05D006761 6.4e-07 58.5 68 45.6
Sed0014392 Sechium edule HOM05D005484 ORTHO05D006761 6.4e-07 58.5 76 43.4
vmacro03234 Vaccinium macrocarpon HOM05D005484 ORTHO05D006761 6.4e-07 58.5 37 70.3
Actinidia24166 Actinidia chinensis HOM05D005484 ORTHO05D006761 8.4e-07 58.2 37 70.3
AL6G33940 Arabidopsis lyrata HOM05D005484 ORTHO05D006761 8.4e-07 58.2 36 72.2
AT5G22830 Arabidopsis thaliana HOM05D005484 ORTHO05D006761 8.4e-07 58.2 36 72.2
CSS0041747 Camellia sinensis var. sinensis HOM05D005484 ORTHO05D006761 8.4e-07 58.2 37 73.0
Carub.0006s2055 Capsella rubella HOM05D005484 ORTHO05D006761 8.4e-07 58.2 36 72.2
CARHR190740 Cardamine hirsuta HOM05D005484 ORTHO05D006761 8.4e-07 58.2 36 72.2
Aa31LG1G12880 Aethionema arabicum HOM05D005484 ORTHO05D006761 1.1e-06 57.8 69 47.8
Gohir.A13G223600 Gossypium hirsutum HOM05D005484 ORTHO05D006761 1.1e-06 57.8 68 45.6
Lj2A998T22 Lonicera japonica HOM05D005484 ORTHO05D006761 1.1e-06 57.8 65 50.8
PGR119G0112 Punica granatum HOM05D005484 ORTHO05D006761 1.1e-06 57.8 64 46.9
Cc01_g10030 Coffea canephora HOM05D005484 ORTHO05D006761 1.4e-06 57.4 40 65.0
Rhsim13G0103500 Rhododendron simsii HOM05D005484 ORTHO05D006761 1.4e-06 57.4 78 43.6
C09p53800 Brassica napus HOM05D005484 ORTHO05D006761 1.9e-06 57.0 36 69.4
BolC9t58255H Brassica oleracea HOM05D005484 ORTHO05D006761 1.9e-06 57.0 36 69.4
FvH4_3g30160 Fragaria vesca HOM05D005484 ORTHO05D006761 2.4e-06 56.6 40 65.0
FAN11G2949 Fragaria x ananassa HOM05D005484 ORTHO05D006761 2.4e-06 56.6 40 65.0
FAN16G1757 Fragaria x ananassa HOM05D005484 ORTHO05D006761 2.4e-06 56.6 40 65.0
FAN25G3300 Fragaria x ananassa HOM05D005484 ORTHO05D006761 2.4e-06 56.6 40 65.0
Peaxi162Scf00150g00079 Petunia axillaris HOM05D005484 ORTHO05D006761 2.4e-06 56.6 40 62.5
RcHm_v2.0_Chr5g0055951 Rosa chinensis HOM05D005484 ORTHO05D006761 2.4e-06 56.6 40 65.0
Sp6g22590 Schrenkiella parvula HOM05D005484 ORTHO05D006761 2.4e-06 56.6 36 69.4
Aqoxy1G01005 Aquilegia oxysepala HOM05D005484 ORTHO05D006761 3.2e-06 56.2 80 40.0
BcaB08g36405 Brassica carinata HOM05D005484 ORTHO05D006761 3.2e-06 56.2 36 69.4
BcaC04g19603 Brassica carinata HOM05D005484 ORTHO05D006761 3.2e-06 56.2 36 69.4
A10p18190 Brassica napus HOM05D005484 ORTHO05D006761 3.2e-06 56.2 36 69.4
BraA10t43894Z Brassica rapa HOM05D005484 ORTHO05D006761 3.2e-06 56.2 36 69.4
Migut.N02528 Erythranthe guttata HOM05D005484 ORTHO05D006761 3.2e-06 56.2 69 50.7
Potri.009G151400 Populus trichocarpa HOM05D005484 ORTHO05D006761 3.2e-06 56.2 40 65.0
unitig_22.g6648 Utricularia gibba HOM05D005484 ORTHO05D006761 3.2e-06 56.2 89 42.7
Ah.01g016150 Amaranthus hybridus HOM05D005484 ORTHO05D006761 4.1e-06 55.8 37 67.6
Thhalv10013483m.g Eutrema salsugineum HOM05D005484 ORTHO05D006761 4.1e-06 55.8 36 66.7
Gorai.013G259100 Gossypium raimondii HOM05D005484 ORTHO05D006761 4.1e-06 55.8 68 44.1
Lsat_1_v5_gn_2_96860 Lactuca sativa HOM05D005484 ORTHO05D006761 4.1e-06 55.8 37 67.6
ClCG01G013990 Citrullus lanatus HOM05D005484 ORTHO05D006761 5.4e-06 55.5 37 64.9
DCAR_015491 Daucus carota HOM05D005484 ORTHO05D006761 5.4e-06 55.5 68 47.1
Lsat_1_v5_gn_6_42460 Lactuca sativa HOM05D005484 ORTHO05D006761 5.4e-06 55.5 58 50.0
TWI31G0675 Tripterygium wilfordii HOM05D005484 ORTHO05D006761 5.4e-06 55.5 113 36.3
Duzib170G0418 Durio zibethinus HOM05D005484 ORTHO05D006761 7.1e-06 55.1 53 54.7
Prupe.6G116100 Prunus persica HOM05D005484 ORTHO05D006761 7.1e-06 55.1 37 67.6
ECA233G3593 Erigeron canadensis HOM05D005484 ORTHO05D006761 9.2e-06 54.7 37 67.6
HanXRQChr14g0451871 Helianthus annuus HOM05D005484 ORTHO05D006761 9.2e-06 54.7 37 64.9
Nitab4.5_0000442g0140 Nicotiana tabacum HOM05D005484 ORTHO05D006761 9.2e-06 54.7 40 60.0
PSO063G3820 Papaver somniferum HOM05D005484 ORTHO05D006761 9.2e-06 54.7 64 42.2
PSO339G5122 Papaver somniferum HOM05D005484 ORTHO05D006761 9.2e-06 54.7 47 51.1
Sabra09G0119900 Salix brachista HOM05D005484 ORTHO05D006761 9.2e-06 54.7 36 69.4


User provided reference genes

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