Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 5.5e-184 647.5 332 100.0
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 4.3e-136 488.4 330 73.9
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 6.7e-129 464.5 332 70.5
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 4.3e-128 461.8 330 71.2
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 1.4e-126 456.8 329 69.9
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 1.4e-126 456.8 328 70.7
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 1.2e-125 453.8 329 69.3
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 5.8e-125 451.4 329 69.6
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 1.3e-124 450.3 330 68.8
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 6.4e-124 448.0 329 69.0
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 1.9e-123 446.4 325 68.3
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 1.9e-123 446.4 330 69.1
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 3.5e-122 442.2 332 67.5
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 3.5e-122 442.2 336 67.9
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 6.0e-122 441.4 332 68.1
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 7.9e-122 441.0 347 66.9
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 1.8e-121 439.9 332 68.7
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 3.0e-121 439.1 330 65.8
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 5.1e-121 438.3 328 65.5
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 6.7e-121 438.0 330 67.9
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 8.7e-121 437.6 330 67.0
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 1.9e-120 436.4 330 65.8
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 4.3e-120 435.3 330 66.7
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 5.6e-120 434.9 322 68.3
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 5.6e-120 434.9 330 66.1
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 1.3e-119 433.7 329 68.7
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 2.1e-119 433.0 328 65.9
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 2.8e-119 432.6 330 66.7
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 1.8e-118 429.9 331 67.1
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 4.0e-118 428.7 328 64.0
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 5.3e-118 428.3 327 66.4
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 5.3e-118 428.3 329 64.1
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 6.9e-118 427.9 332 65.1
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 9.0e-118 427.6 332 67.8
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.2e-117 427.2 332 67.5
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 1.2e-117 427.2 329 64.7
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 1.5e-117 426.8 329 63.8
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 2.6e-117 426.0 332 67.5
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 2.6e-117 426.0 331 64.0
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 2.6e-117 426.0 329 67.5
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 3.4e-117 425.6 294 71.8
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 3.4e-117 425.6 332 67.2
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 3.4e-117 425.6 330 64.8
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 4.5e-117 425.2 337 63.5
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 5.8e-117 424.9 329 65.0
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 7.6e-117 424.5 332 67.5
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 7.6e-117 424.5 331 65.9
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 1.0e-116 424.1 326 66.6
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 1.3e-116 423.7 329 64.1
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 2.2e-116 422.9 331 66.2
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 2.2e-116 422.9 329 64.4
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 2.9e-116 422.5 361 60.9
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 3.8e-116 422.2 328 64.0
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 3.8e-116 422.2 329 65.0
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 6.5e-116 421.4 331 65.3
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 1.1e-115 420.6 330 63.3
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 1.4e-115 420.2 329 65.7
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 1.4e-115 420.2 330 63.6
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 2.5e-115 419.5 329 63.8
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 2.5e-115 419.5 330 63.0
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 4.2e-115 418.7 331 65.6
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 4.2e-115 418.7 331 65.9
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 1.2e-114 417.2 338 63.0
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 1.2e-114 417.2 329 65.3
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 1.6e-114 416.8 330 63.6
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 2.1e-114 416.4 331 65.9
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 2.7e-114 416.0 330 63.0
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 4.6e-114 415.2 329 64.1
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 4.6e-114 415.2 329 62.6
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 4.6e-114 415.2 329 63.2
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 6.0e-114 414.8 329 62.0
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 1.3e-113 413.7 354 61.6
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 3.9e-113 412.1 330 62.1
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 3.3e-112 409.1 361 59.6
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 4.3e-112 408.7 331 62.8
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 5.7e-112 408.3 338 60.9
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 7.4e-112 407.9 325 65.2
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 1.6e-111 406.8 327 64.5
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 8.2e-111 404.4 329 63.5
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 5.3e-110 401.7 329 61.7
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 2.6e-109 399.4 330 60.0
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 4.5e-109 398.7 330 60.3
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 4.5e-109 398.7 330 61.2
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 7.6e-109 397.9 331 61.3
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 7.6e-109 397.9 402 55.7
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 7.6e-109 397.9 277 71.5
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 1.0e-108 397.5 327 63.9
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 2.2e-108 396.4 330 60.6
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 3.8e-108 395.6 330 60.3
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 1.1e-107 394.0 330 62.4
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.9e-107 393.3 331 60.7
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 5.5e-107 391.7 333 58.9
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 1.2e-106 390.6 330 59.7
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 2.1e-106 389.8 343 58.6
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 2.7e-106 389.4 330 59.1
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 3.6e-106 389.0 326 61.7
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 3.6e-106 389.0 329 61.1
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.0e-105 387.5 325 61.2
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 3.9e-105 385.6 330 58.8
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 1.2e-101 374.0 323 58.2
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 5.9e-101 371.7 214 89.3
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 7.7e-101 371.3 329 57.8
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 2.2e-100 369.8 292 63.4
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 8.5e-100 367.9 329 58.4
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 4.2e-99 365.5 329 60.2
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 1.4e-97 360.5 329 57.1
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 2.0e-96 356.7 336 56.0
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 1.7e-92 343.6 329 55.6
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 2.2e-84 316.6 322 55.0
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 5.0e-84 315.5 333 52.3
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 1.0e-81 307.8 325 49.8
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 6.7e-81 305.1 327 50.5
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 9.7e-80 301.2 276 57.6
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.8e-78 297.0 327 50.8
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 9.1e-78 294.7 331 49.8
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 4.5e-77 292.4 330 51.2
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 2.2e-76 290.0 177 80.2
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 2.9e-76 289.7 314 47.8
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 4.2e-75 285.8 325 49.2
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 1.9e-67 260.4 200 63.5
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 5.5e-67 258.8 287 47.4
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 5.2e-57 225.7 308 40.9
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.3e-55 221.1 198 57.6
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 1.7e-55 220.7 188 62.2
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 2.2e-55 220.3 325 41.5
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 4.1e-54 216.1 271 47.6
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 6.0e-53 212.2 139 69.8
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.9e-51 207.2 333 40.2
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 5.2e-49 199.1 133 72.2
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 2.0e-48 197.2 161 60.9
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 6.4e-47 192.2 131 67.9
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 2.4e-46 190.3 270 40.4
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 9.2e-46 188.3 135 68.9
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 3.5e-45 186.4 184 52.2
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.7e-44 184.1 131 69.5
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 1.4e-38 164.5 172 47.1
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 3.2e-38 163.3 128 63.3
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 6.6e-36 155.6 139 54.7
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 1.5e-35 154.5 241 36.5
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 1.5e-35 154.5 199 43.7
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.9e-35 154.1 182 45.1
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 4.7e-34 149.4 115 65.2
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 1.4e-33 147.9 89 75.3
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 2.6e-32 143.7 152 50.0
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 7.6e-32 142.1 139 45.3
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 1.9e-30 137.5 147 51.0
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 1.0e-28 131.7 126 50.0
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 1.0e-28 131.7 82 67.1
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 1.0e-28 131.7 176 39.8
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 1.3e-28 131.3 117 59.0
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.6e-26 124.4 119 52.1
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 5.3e-25 119.4 148 45.9
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 3.9e-20 103.2 68 70.6
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 3.6e-18 96.7 198 37.9
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 2.8e-10 70.5 90 43.3
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 2.8e-10 70.5 90 43.3
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 4.8e-10 69.7 75 48.0
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 1.9e-06 57.8 61 55.7
SalBow2G0531 Salvia bowleyana HOM05D004465 ORTHO05D351996 7.1e-06 55.8 33 72.7


User provided reference genes

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