Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0301 Ceratophyllum demersum HOM05D004922 ORTHO05D005990 1.9e-33 145.2 70 100.0
Cc01_g17260 Coffea canephora HOM05D004922 ORTHO05D005990 1.7e-26 122.1 59 98.3
Eucgr.H03678 Eucalyptus grandis HOM05D004922 ORTHO05D005990 1.7e-26 122.1 59 98.3
Phvul.002G196500 Phaseolus vulgaris HOM05D004922 ORTHO05D005990 1.7e-26 122.1 59 98.3
THA.LOC104818942 Tarenaya hassleriana HOM05D004922 ORTHO05D005990 1.7e-26 122.1 59 98.3
THA.LOC104827350 Tarenaya hassleriana HOM05D004922 ORTHO05D005990 1.7e-26 122.1 59 98.3
Actinidia35950 Actinidia chinensis HOM05D004922 ORTHO05D005990 2.9e-26 121.3 58 100.0
CAN.G500.78 Capsicum annuum HOM05D004922 ORTHO05D005990 2.9e-26 121.3 58 100.0
CDE02G4734 Ceratophyllum demersum HOM05D004922 ORTHO05D005990 2.9e-26 121.3 59 98.3
Peaxi162Scf00047g01222 Petunia axillaris HOM05D004922 ORTHO05D005990 2.9e-26 121.3 58 100.0
Peaxi162Scf00122g00811 Petunia axillaris HOM05D004922 ORTHO05D005990 2.9e-26 121.3 58 100.0
SalBow3G3780 Salvia bowleyana HOM05D004922 ORTHO05D005990 2.9e-26 121.3 58 100.0
Solyc09g091500.3 Solanum lycopersicum HOM05D004922 ORTHO05D005990 2.9e-26 121.3 58 100.0
Sopen09g034430 Solanum pennellii HOM05D004922 ORTHO05D005990 2.9e-26 121.3 58 100.0
PGSC0003DMG400029651 Solanum tuberosum HOM05D004922 ORTHO05D005990 2.9e-26 121.3 58 100.0
Atru.chr8.785 Acer truncatum HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
arahy.Tifrunner.gnm1.ann1.AXK6HV Arachis hypogaea HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
arahy.Tifrunner.gnm1.ann1.N94L43 Arachis hypogaea HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
CANSAT01G0689 Cannabis sativa HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
CANSAT01G1757 Cannabis sativa HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
Ca_18278_v3 Cicer arietinum L. HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
ClCG07G001790 Citrullus lanatus HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
COL.COLO4_37469 Corchorus olitorius HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
Dinv04668 Davidia involucrata HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
Duzib138G1451 Durio zibethinus HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
Glyma.08G082700 Glycine max HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
Gohir.A07G155600 Gossypium hirsutum HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
Gohir.A11G136000 Gossypium hirsutum HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
Gohir.D11G142400 Gossypium hirsutum HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
Gorai.001G185300 Gossypium raimondii HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
Gorai.007G152700 Gossypium raimondii HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
Hma1.2p1_1061F.1_g253320 Hydrangea macrophylla HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
Manes.12G042100 Manihot esculenta HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
Manes.13G044200 Manihot esculenta HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
Medtr4g094600 Medicago truncatula HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
Phvul.001G007400 Phaseolus vulgaris HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
Psat7g092040 Pisum sativum HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
PGR044G2430 Punica granatum HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
QL09p007931 Quercus lobata HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
QL09p044611 Quercus lobata HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
RcHm_v2.0_Chr2g0121221 Rosa chinensis HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
Sed0006654 Sechium edule HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
Sed0024440 Sechium edule HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
Thecc.01G228800 Theobroma cacao HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
TPR.G1594 Trifolium pratense HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
TPR.G4933 Trifolium pratense HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
TWI09G0408 Tripterygium wilfordii HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
TWI59G0402 Tripterygium wilfordii HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
TAR365G0710 Trochodendron aralioides HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
TAR636G3017 Trochodendron aralioides HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 96.6
GSVIVG01029076001 Vitis vinifera HOM05D004922 ORTHO05D005990 3.8e-26 120.9 59 98.3
Gohir.D07G162000 Gossypium hirsutum HOM05D004922 ORTHO05D005990 5.0e-26 120.6 59 94.9
EL10Ac4g08876 Beta vulgaris HOM05D004922 ORTHO05D005990 6.5e-26 120.2 58 98.3
CSS0022478 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 6.5e-26 120.2 58 98.3
CSS0038803 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 6.5e-26 120.2 58 98.3
Cpa.g.sc3.67 Carica papaya HOM05D004922 ORTHO05D005990 6.5e-26 120.2 59 94.9
CiPaw.03G151500 Carya illinoinensis HOM05D004922 ORTHO05D005990 6.5e-26 120.2 58 98.3
Nn7g37520 Nelumbo nucifera HOM05D004922 ORTHO05D005990 6.5e-26 120.2 58 98.3
PSO210G2196 Papaver somniferum HOM05D004922 ORTHO05D005990 6.5e-26 120.2 59 96.6
PSO591G0020 Papaver somniferum HOM05D004922 ORTHO05D005990 6.5e-26 120.2 59 96.6
PSO832G2289 Papaver somniferum HOM05D004922 ORTHO05D005990 6.5e-26 120.2 59 96.6
Prupe.8G205100 Prunus persica HOM05D004922 ORTHO05D005990 6.5e-26 120.2 59 96.6
SEGI_22867 Sequoiadendron giganteum HOM05D004922 ORTHO05D005990 6.5e-26 120.2 59 96.6
Aa31LG5G17580 Aethionema arabicum HOM05D004922 ORTHO05D005990 8.5e-26 119.8 59 94.9
Aqoxy1G00374 Aquilegia oxysepala HOM05D004922 ORTHO05D005990 8.5e-26 119.8 59 96.6
CSS0043203 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 8.5e-26 119.8 59 94.9
Dinv19219 Davidia involucrata HOM05D004922 ORTHO05D005990 8.5e-26 119.8 59 94.9
Duzib133G0821 Durio zibethinus HOM05D004922 ORTHO05D005990 8.5e-26 119.8 59 94.9
Lalb_Chr07g0188871 Lupinus albus HOM05D004922 ORTHO05D005990 8.5e-26 119.8 59 94.9
Lalb_Chr11g0067741 Lupinus albus HOM05D004922 ORTHO05D005990 8.5e-26 119.8 59 94.9
HPP92_027867 Vanilla planifolia HOM05D004922 ORTHO05D005990 8.5e-26 119.8 59 94.9
Ah.06g191400 Amaranthus hybridus HOM05D004922 ORTHO05D005990 1.1e-25 119.4 58 98.3
Glyma.05G127900 Glycine max HOM05D004922 ORTHO05D005990 1.1e-25 119.4 59 94.9
Nitab4.5_0002920g0030 Nicotiana tabacum HOM05D004922 ORTHO05D005990 1.1e-25 119.4 58 98.3
Nitab4.5_0003904g0020 Nicotiana tabacum HOM05D004922 ORTHO05D005990 1.1e-25 119.4 58 98.3
Actinidia39954 Actinidia chinensis HOM05D004922 ORTHO05D005990 1.4e-25 119.0 57 100.0
CiPaw.04G107000 Carya illinoinensis HOM05D004922 ORTHO05D005990 1.4e-25 119.0 58 96.6
Haze_24774 Corylus avellana HOM05D004922 ORTHO05D005990 1.4e-25 119.0 58 96.6
ECA236G1627 Erigeron canadensis HOM05D004922 ORTHO05D005990 1.4e-25 119.0 59 94.9
Lj4g0004779 Lotus japonicus HOM05D004922 ORTHO05D005990 1.4e-25 119.0 59 94.9
Rhsim02G0053600 Rhododendron simsii HOM05D004922 ORTHO05D005990 1.4e-25 119.0 58 98.3
Sc05g0002390 Simmondsia chinensis HOM05D004922 ORTHO05D005990 1.4e-25 119.0 58 96.6
MELO3C018062.2 Cucumis melo HOM05D004922 ORTHO05D005990 1.9e-25 118.6 59 94.9
CsaV3_3G028790 Cucumis sativus L. HOM05D004922 ORTHO05D005990 1.9e-25 118.6 59 94.9
FvH4_1g24390 Fragaria vesca HOM05D004922 ORTHO05D005990 2.5e-25 118.2 59 93.2
FAN19G2048 Fragaria x ananassa HOM05D004922 ORTHO05D005990 2.5e-25 118.2 59 93.2
FAN23G2197 Fragaria x ananassa HOM05D004922 ORTHO05D005990 2.5e-25 118.2 59 93.2
FAN26G0321 Fragaria x ananassa HOM05D004922 ORTHO05D005990 2.5e-25 118.2 59 93.2
FAN26G0401 Fragaria x ananassa HOM05D004922 ORTHO05D005990 2.5e-25 118.2 59 93.2
FAN28G0422 Fragaria x ananassa HOM05D004922 ORTHO05D005990 2.5e-25 118.2 59 93.2
MD05G1178700 Malus domestica HOM05D004922 ORTHO05D005990 2.5e-25 118.2 58 96.6
Ciclev10022785m.g Citrus clementina HOM05D004922 ORTHO05D005990 3.2e-25 117.9 59 93.2
Migut.D00519 Erythranthe guttata HOM05D004922 ORTHO05D005990 3.2e-25 117.9 59 93.2
AT5G48870 Arabidopsis thaliana HOM05D004922 ORTHO05D005990 4.2e-25 117.5 59 93.2
Thhalv10005202m.g Eutrema salsugineum HOM05D004922 ORTHO05D005990 4.2e-25 117.5 59 93.2
Lalb_Chr13g0291421 Lupinus albus HOM05D004922 ORTHO05D005990 4.2e-25 117.5 59 93.2
Carub.0008s0859 Capsella rubella HOM05D004922 ORTHO05D005990 5.5e-25 117.1 59 91.5
Migut.N00343 Erythranthe guttata HOM05D004922 ORTHO05D005990 5.5e-25 117.1 58 94.8
HanXRQChr04g0110651 Helianthus annuus HOM05D004922 ORTHO05D005990 5.5e-25 117.1 59 93.2
HanXRQChr10g0287281 Helianthus annuus HOM05D004922 ORTHO05D005990 5.5e-25 117.1 59 93.2
Lsat_1_v5_gn_8_90161 Lactuca sativa HOM05D004922 ORTHO05D005990 5.5e-25 117.1 59 93.2
Pp3c1_36020 Physcomitrium patens HOM05D004922 ORTHO05D005990 5.5e-25 117.1 57 96.5
SMO118G0467 Selaginella moellendorffii HOM05D004922 ORTHO05D005990 5.5e-25 117.1 59 93.2
AagrBONN_evm.TU.Sc2ySwM_228.5635 Anthoceros agrestis HOM05D004922 ORTHO05D005990 7.2e-25 116.7 59 93.2
MD10G1167200 Malus domestica HOM05D004922 ORTHO05D005990 7.2e-25 116.7 58 94.8
Potri.001G277900 Populus trichocarpa HOM05D004922 ORTHO05D005990 7.2e-25 116.7 58 94.8
Potri.009G072500 Populus trichocarpa HOM05D004922 ORTHO05D005990 7.2e-25 116.7 58 94.8
Sabra09G0054700 Salix brachista HOM05D004922 ORTHO05D005990 7.2e-25 116.7 58 94.8
Sabra16G0171900 Salix brachista HOM05D004922 ORTHO05D005990 7.2e-25 116.7 58 94.8
AL8G22040 Arabidopsis lyrata HOM05D004922 ORTHO05D005990 1.6e-24 115.5 59 91.5
CARHR182850 Cardamine hirsuta HOM05D004922 ORTHO05D005990 1.6e-24 115.5 58 93.1
Mapoly0016s0054 Marchantia polymorpha HOM05D004922 ORTHO05D005990 1.6e-24 115.5 59 91.5
Sp2g19260 Schrenkiella parvula HOM05D004922 ORTHO05D005990 1.6e-24 115.5 58 93.1
BcaB04g19588 Brassica carinata HOM05D004922 ORTHO05D005990 3.6e-24 114.4 58 93.1
Os05g0389300 Oryza sativa ssp. japonica HOM05D004922 ORTHO05D005990 6.1e-24 113.6 57 94.7
Zm00001eb287110 Zea mays HOM05D004922 ORTHO05D005990 6.1e-24 113.6 57 94.7
Zm00001eb350780 Zea mays HOM05D004922 ORTHO05D005990 6.1e-24 113.6 57 94.7
unitig_22.g5302 Utricularia gibba HOM05D004922 ORTHO05D005990 7.9e-24 113.2 59 88.1
BcaB07g30046 Brassica carinata HOM05D004922 ORTHO05D005990 2.3e-23 111.7 58 93.1
BcaC03g17679 Brassica carinata HOM05D004922 ORTHO05D005990 2.3e-23 111.7 58 93.1
BcaC04g23758 Brassica carinata HOM05D004922 ORTHO05D005990 2.3e-23 111.7 58 93.1
A02p37760 Brassica napus HOM05D004922 ORTHO05D005990 2.3e-23 111.7 58 93.1
A09p04660 Brassica napus HOM05D004922 ORTHO05D005990 2.3e-23 111.7 58 93.1
C02p56860 Brassica napus HOM05D004922 ORTHO05D005990 2.3e-23 111.7 58 93.1
C09p04970 Brassica napus HOM05D004922 ORTHO05D005990 2.3e-23 111.7 58 93.1
BolC2t11755H Brassica oleracea HOM05D004922 ORTHO05D005990 2.3e-23 111.7 58 93.1
BraA02t08759Z Brassica rapa HOM05D004922 ORTHO05D005990 2.3e-23 111.7 58 93.1
BraA09t36102Z Brassica rapa HOM05D004922 ORTHO05D005990 2.3e-23 111.7 58 93.1
BolC9t53426H Brassica oleracea HOM05D004922 ORTHO05D005990 3.0e-23 111.3 58 91.4
DCAR_000537 Daucus carota HOM05D004922 ORTHO05D005990 3.9e-23 110.9 53 98.1
unitig_8.g3754 Utricularia gibba HOM05D004922 ORTHO05D005990 3.9e-23 110.9 59 86.4
MCO15G079 Micromonas commoda HOM05D004922 ORTHO05D005990 1.5e-22 109.0 59 81.4
Oeu016707.1 Olea europaea HOM05D004922 ORTHO05D005990 5.7e-22 107.1 51 100.0
ATR0580G296 Amborella trichopoda HOM05D004922 ORTHO05D005990 6.3e-21 103.6 49 100.0
PRCOL_00003510 Prasinoderma coloniale HOM05D004922 ORTHO05D005990 6.3e-21 103.6 57 77.2
SGA_v2.0_scaffold8G04653 Striga asiatica HOM05D004922 ORTHO05D005990 1.1e-20 102.8 66 77.3
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 1.8e-20 102.1 60 85.0
MD10G1019300 Malus domestica HOM05D004922 ORTHO05D005990 1.8e-20 102.1 51 94.1
Atru.chr10.1425 Acer truncatum HOM05D004922 ORTHO05D005990 5.3e-20 100.5 52 90.4
Hund05521 Selenicereus undatus HOM05D004922 ORTHO05D005990 9.1e-20 99.8 48 97.9
HPP92_006337 Vanilla planifolia HOM05D004922 ORTHO05D005990 1.1e-14 82.8 59 72.9
Haze_26353 Corylus avellana HOM05D004922 ORTHO05D005990 2.0e-14 82.0 57 59.6
AUR62033984 Chenopodium quinoa HOM05D004922 ORTHO05D005990 4.5e-11 70.9 34 97.1
DCAR_023130 Daucus carota HOM05D004922 ORTHO05D005990 1.3e-10 69.3 34 94.1
MD00G1053800 Malus domestica HOM05D004922 ORTHO05D005990 2.2e-10 68.6 34 94.1
CARHR182860 Cardamine hirsuta HOM05D004922 ORTHO05D005990 3.8e-10 67.8 48 72.9
EL10Ac1g01454 Beta vulgaris HOM05D004922 ORTHO05D005990 3.2e-09 64.7 29 100.0
HanXRQChr11g0331491 Helianthus annuus HOM05D004922 ORTHO05D005990 4.2e-09 64.3 33 90.9


User provided reference genes

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