Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 1.0e-245 853.2 514 100.0
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 1.6e-243 845.9 514 99.2
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 9.7e-236 820.1 514 95.5
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 2.2e-235 818.9 514 94.2
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 6.3e-235 817.4 514 94.6
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 2.6e-233 812.0 512 94.7
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 2.9e-232 808.5 514 93.0
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 8.5e-232 807.0 514 88.5
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 2.1e-230 802.4 514 92.4
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 1.0e-229 800.0 514 93.4
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 3.0e-229 798.5 513 93.2
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 9.7e-228 793.5 514 92.2
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 1.3e-227 793.1 513 92.0
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 2.8e-227 792.0 512 91.6
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 3.1e-226 788.5 514 91.2
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 5.3e-226 787.7 514 92.8
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 5.3e-226 787.7 514 91.1
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 9.1e-226 786.9 514 91.1
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 1.2e-225 786.6 514 89.9
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 1.5e-225 786.2 514 89.5
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 2.0e-225 785.8 514 92.4
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 2.6e-225 785.4 514 92.2
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 4.5e-225 784.6 514 89.9
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 4.5e-225 784.6 514 91.6
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 5.9e-225 784.3 514 90.9
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 7.7e-225 783.9 513 89.5
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 1.0e-224 783.5 512 91.8
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 1.3e-224 783.1 513 89.5
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 1.7e-224 782.7 514 90.9
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 2.9e-224 781.9 514 89.1
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 2.9e-224 781.9 513 89.3
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 1.1e-223 780.0 514 90.7
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 1.4e-223 779.6 513 89.5
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 1.9e-223 779.2 514 90.5
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 1.9e-223 779.2 512 91.2
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 2.5e-223 778.9 513 90.8
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 2.5e-223 778.9 511 90.6
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 5.5e-223 777.7 511 90.6
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 9.4e-223 776.9 514 90.5
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 2.7e-222 775.4 514 85.4
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 3.6e-222 775.0 510 87.5
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 6.1e-222 774.2 536 87.1
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 1.0e-221 773.5 514 84.0
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 1.0e-221 773.5 510 86.7
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 1.8e-221 772.7 513 90.6
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 2.3e-221 772.3 510 90.0
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 2.3e-221 772.3 514 88.3
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 5.1e-221 771.2 511 91.6
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 5.1e-221 771.2 507 91.3
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 6.7e-221 770.8 510 86.1
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 6.7e-221 770.8 511 85.9
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 1.1e-220 770.0 514 89.5
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 3.3e-220 768.5 511 90.4
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 4.4e-220 768.1 512 90.6
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 5.7e-220 767.7 504 90.1
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 9.7e-220 766.9 514 87.9
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 1.3e-219 766.5 513 89.5
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 1.3e-219 766.5 510 89.6
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 1.3e-219 766.5 513 87.3
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 1.3e-219 766.5 504 90.5
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 2.8e-219 765.4 514 85.2
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 3.7e-219 765.0 514 88.7
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 3.1e-218 761.9 504 88.1
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 7.0e-218 760.8 511 87.7
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 7.0e-218 760.8 514 89.5
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 2.0e-217 759.2 509 84.1
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 2.0e-217 759.2 504 89.7
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 2.6e-217 758.8 512 90.4
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 2.6e-217 758.8 514 88.1
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 4.5e-217 758.1 527 78.0
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 1.7e-216 756.1 511 84.0
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 8.5e-216 753.8 514 84.2
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 1.6e-214 749.6 513 83.2
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 1.0e-213 746.9 514 88.1
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 1.0e-213 746.9 515 86.8
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 1.4e-213 746.5 535 81.1
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 3.9e-213 745.0 514 83.1
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 3.9e-213 745.0 514 83.1
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 8.8e-213 743.8 511 81.6
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 1.1e-212 743.4 511 82.4
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 1.5e-212 743.0 511 84.7
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 1.3e-211 740.0 514 87.5
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 4.1e-210 734.9 511 84.9
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 1.6e-209 733.0 500 85.6
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 1.6e-209 733.0 514 77.2
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 2.0e-209 732.6 542 79.2
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 4.5e-209 731.5 509 84.9
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 4.5e-209 731.5 509 84.9
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 7.7e-209 730.7 511 84.5
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.0e-208 730.3 509 88.0
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 3.2e-207 725.3 485 89.1
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 6.1e-206 721.1 514 82.1
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 1.8e-205 719.5 514 84.0
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 2.3e-205 719.2 514 81.5
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 1.5e-204 716.5 557 78.8
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 1.5e-204 716.5 464 96.3
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 4.1e-202 708.4 511 84.5
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 2.7e-201 705.7 520 81.9
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 2.7e-201 705.7 514 82.9
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 5.5e-199 698.0 535 79.3
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 2.7e-198 695.7 514 74.3
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 2.3e-197 692.6 484 86.4
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 1.1e-194 683.7 551 70.4
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 7.7e-193 677.6 525 80.4
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 5.5e-191 671.4 468 88.2
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 6.1e-190 667.9 511 73.2
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 4.0e-189 665.2 513 82.7
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 1.5e-180 636.7 435 86.4
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 1.6e-177 626.7 430 90.7
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 3.9e-176 622.1 428 88.3
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 1.1e-162 577.4 414 87.9
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 1.5e-156 557.0 511 66.1
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 7.8e-153 544.7 511 66.9
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 2.2e-139 500.0 269 90.0
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 9.3e-130 468.0 254 90.9
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 1.8e-128 463.8 322 86.6
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 3.8e-123 446.0 311 80.4
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 1.9e-114 417.2 385 60.8
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 4.4e-103 379.4 210 91.4
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 9.7e-103 378.3 210 91.0
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 4.5e-92 342.8 365 74.0
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 6.8e-80 302.4 257 81.3
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 1.2e-76 291.6 520 49.8
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 3.5e-68 263.5 175 86.3
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 2.4e-61 240.7 134 91.8
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 1.7e-59 234.6 526 34.0
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 8.9e-48 195.7 99 88.9
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 2.5e-42 177.6 150 61.3
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 9.6e-42 175.6 254 40.6
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 1.1e-37 162.2 80 92.5
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 1.1e-34 152.1 238 45.4
SEGI_19922 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 7.3e-34 149.4 80 93.8
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 1.3e-30 138.7 137 59.1
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 1.7e-30 138.3 299 30.8
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 1.9e-29 134.8 106 67.0
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 1.5e-26 125.2 70 85.7
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 1.1e-24 119.0 69 82.6
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 9.0e-24 115.9 64 82.8
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 9.0e-24 115.9 64 82.8
TPR.G15252 Trifolium pratense HOM05D004842 ORTHO05D005929 7.9e-20 102.8 50 90.0
Duzib211G0352 Durio zibethinus HOM05D004842 ORTHO05D005929 1.0e-19 102.4 56 80.4
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 3.9e-19 100.5 56 78.6
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 8.1e-17 92.8 73 61.6
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 8.1e-17 92.8 73 61.6
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 3.1e-16 90.9 47 93.6
ECA238G3245 Erigeron canadensis HOM05D000757 ORTHO05D000622 4.0e-16 90.5 44 88.6
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 7.6e-15 86.3 44 84.1
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 1.0e-14 85.9 126 42.1
Sed0018019 Sechium edule HOM05D004842 ORTHO05D005929 1.6e-12 78.6 105 44.8
TPR.G33759 Trifolium pratense HOM05D004842 ORTHO05D005929 1.6e-12 78.6 134 75.4
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 5.1e-11 73.6 36 86.1
Oeu002300.1 Olea europaea HOM05D004842 ORTHO05D005929 2.6e-07 61.2 60 56.7
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 2.2e-06 58.2 35 71.4
TPR.G36494 Trifolium pratense HOM05D009291 ORTHO05D010716 5.0e-06 57.0 29 79.3


User provided reference genes

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