Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 1.2e-180 636.3 317 100.0
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 1.2e-114 417.2 401 59.1
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 7.6e-74 281.6 396 45.5
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 1.2e-66 257.7 329 48.9
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 8.5e-65 251.5 402 41.5
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 5.5e-64 248.8 417 41.5
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 6.1e-63 245.4 400 41.8
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 3.0e-62 243.0 400 40.0
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 3.0e-62 243.0 405 42.5
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 3.3e-61 239.6 393 40.5
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 7.4e-61 238.4 396 40.9
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 9.7e-61 238.0 388 41.0
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 2.2e-60 236.9 396 40.9
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 3.7e-60 236.1 390 40.5
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 1.1e-59 234.6 387 40.6
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 5.3e-59 232.3 400 41.0
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 1.2e-58 231.1 397 40.3
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 2.0e-58 230.3 412 37.9
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 2.6e-58 229.9 395 40.0
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 2.6e-58 229.9 399 39.1
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 4.5e-58 229.2 395 40.0
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 4.5e-58 229.2 393 38.7
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 5.9e-58 228.8 412 38.8
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 7.7e-58 228.4 402 39.8
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.0e-57 228.0 405 38.8
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 1.3e-57 227.6 408 39.5
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 1.3e-57 227.6 410 40.2
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 2.2e-57 226.9 394 40.1
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 3.8e-57 226.1 427 38.9
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.9e-56 223.8 412 39.1
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 1.9e-56 223.8 381 40.2
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.5e-56 223.4 398 39.4
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 3.2e-56 223.0 398 38.7
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 4.2e-56 222.6 412 38.3
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 5.5e-56 222.2 390 38.2
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 7.2e-56 221.9 391 38.4
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 1.2e-55 221.1 390 37.9
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 1.6e-55 220.7 402 37.1
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 3.6e-55 219.5 397 38.5
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 6.1e-55 218.8 400 39.5
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 7.9e-55 218.4 422 37.2
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 1.4e-54 217.6 406 38.7
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 3.0e-54 216.5 404 38.4
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 3.9e-54 216.1 388 37.4
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 5.1e-54 215.7 395 38.7
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 1.5e-53 214.2 398 38.2
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 2.0e-53 213.8 399 38.8
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 2.6e-53 213.4 401 37.7
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 4.4e-53 212.6 403 38.2
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 4.4e-53 212.6 398 38.4
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 7.4e-53 211.8 395 39.0
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 7.4e-53 211.8 403 38.5
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.7e-52 210.7 403 38.0
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 1.7e-52 210.7 417 37.2
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 3.7e-52 209.5 408 36.0
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 4.8e-52 209.1 381 39.4
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 6.3e-52 208.8 403 38.5
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 6.3e-52 208.8 389 39.8
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 8.2e-52 208.4 411 37.7
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 1.1e-51 208.0 409 37.2
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 1.4e-51 207.6 400 37.2
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.4e-51 207.6 403 38.2
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.8e-51 207.2 403 38.0
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 2.4e-51 206.8 436 36.2
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 2.4e-51 206.8 436 36.2
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 3.1e-51 206.5 395 38.5
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 4.1e-51 206.1 407 37.3
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 9.1e-51 204.9 409 37.2
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 2.0e-50 203.8 412 37.4
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 2.0e-50 203.8 410 36.3
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 3.4e-50 203.0 412 36.9
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 1.3e-49 201.1 398 38.7
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 1.7e-49 200.7 404 35.9
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 6.5e-49 198.7 384 37.8
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 3.2e-48 196.4 458 34.9
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 3.2e-48 196.4 388 36.6
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 3.2e-48 196.4 401 36.4
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 1.2e-47 194.5 394 37.8
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 1.6e-47 194.1 385 37.7
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 2.7e-47 193.4 385 37.9
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 2.7e-47 193.4 385 37.9
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 2.7e-47 193.4 387 36.4
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 3.6e-47 193.0 369 37.9
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 7.9e-47 191.8 385 37.4
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 1.8e-46 190.7 384 37.5
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 1.1e-45 188.0 387 37.2
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 1.5e-45 187.6 384 36.5
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 1.5e-45 187.6 387 35.9
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 2.0e-45 187.2 350 38.6
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 2.6e-45 186.8 393 35.9
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 5.7e-45 185.7 374 37.2
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 9.7e-45 184.9 399 33.1
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 1.3e-44 184.5 383 36.3
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 1.3e-44 184.5 383 35.8
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 1.7e-44 184.1 498 30.5
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 3.1e-43 179.9 322 40.4
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 3.5e-42 176.4 414 32.1
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 1.0e-41 174.9 396 35.1
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 2.2e-41 173.7 403 33.7
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 5.0e-41 172.6 403 32.5
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 1.1e-40 171.4 278 42.1
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 1.5e-40 171.0 376 35.1
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 4.0e-38 162.9 222 46.8
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 5.2e-38 162.5 276 39.9
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 6.7e-38 162.2 274 40.5
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 3.3e-37 159.8 256 42.6
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 5.9e-34 149.1 251 42.2
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 2.9e-33 146.7 340 35.9
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 8.5e-33 145.2 209 45.0
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 9.4e-32 141.7 122 62.3
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 4.7e-31 139.4 459 28.8
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 8.0e-31 138.7 122 62.3
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 1.8e-30 137.5 125 59.2
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 4.1e-27 126.3 212 39.6
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 7.0e-27 125.6 206 41.7
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 9.1e-27 125.2 211 40.3
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 7.7e-26 122.1 210 39.0
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 1.2e-23 114.8 108 54.6
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 1.0e-22 111.7 208 37.5
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 1.2e-21 108.2 216 37.5
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.0e-21 107.5 300 30.7
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 9.2e-19 98.6 65 69.2
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 3.5e-18 96.7 190 37.9
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 5.9e-18 95.9 58 77.6
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 8.6e-17 92.0 188 36.7
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 1.5e-16 91.3 72 68.1
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 2.6e-13 80.5 84 56.0
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 5.7e-13 79.3 165 33.3
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 2.2e-12 77.4 137 38.0
VMungo1127G1160 Vigna mungo HOM05D005149 ORTHO05D000001 3.7e-12 76.6 81 53.1
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 8.3e-12 75.5 385 23.1
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.4e-11 74.7 123 42.3
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.4e-11 74.7 123 42.3
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 5.4e-11 72.8 46 76.1
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 8.6e-09 65.5 46 63.0
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 1.1e-06 58.5 138 29.7
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 1.4e-06 58.2 67 43.3


User provided reference genes

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