Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3768 Ceratophyllum demersum HOM05D003289 ORTHO05D004594 0.0e+00 1598.9 783 100.0
Nn2g14071 Nelumbo nucifera HOM05D003289 ORTHO05D004594 0.0e+00 1315.1 853 75.1
TAR636G3131 Trochodendron aralioides HOM05D003289 ORTHO05D004594 0.0e+00 1310.0 842 75.8
Actinidia07230 Actinidia chinensis HOM05D003289 ORTHO05D004594 0.0e+00 1293.5 848 73.8
Ciclev10027662m.g Citrus clementina HOM05D003289 ORTHO05D004594 0.0e+00 1286.2 850 73.6
Rhsim13G0107600 Rhododendron simsii HOM05D003289 ORTHO05D004594 0.0e+00 1285.0 871 72.4
MSTRG.17714 Avicennia marina HOM05D003289 ORTHO05D004594 0.0e+00 1284.2 845 74.0
PSO384G0460 Papaver somniferum HOM05D003289 ORTHO05D004594 0.0e+00 1281.9 840 73.9
QL01p013239 Quercus lobata HOM05D003289 ORTHO05D004594 0.0e+00 1281.2 850 73.6
arahy.Tifrunner.gnm1.ann1.F25EMM Arachis hypogaea HOM05D003289 ORTHO05D004594 0.0e+00 1280.4 848 73.7
Atru.chr3.3336 Acer truncatum HOM05D003289 ORTHO05D004594 0.0e+00 1279.6 848 74.2
Eucgr.B03882 Eucalyptus grandis HOM05D003289 ORTHO05D004594 0.0e+00 1279.2 851 73.8
CSS0049320 Camellia sinensis var. sinensis HOM05D003289 ORTHO05D004594 0.0e+00 1278.8 844 73.7
arahy.Tifrunner.gnm1.ann1.U78W58 Arachis hypogaea HOM05D003289 ORTHO05D004594 0.0e+00 1278.5 848 73.6
PGR102G2277 Punica granatum HOM05D003289 ORTHO05D004594 0.0e+00 1278.1 851 73.2
Gohir.A05G082500 Gossypium hirsutum HOM05D003289 ORTHO05D004594 0.0e+00 1277.7 829 75.4
Prupe.6G124200 Prunus persica HOM05D003289 ORTHO05D004594 0.0e+00 1276.5 850 72.9
Thecc.09G288000 Theobroma cacao HOM05D003289 ORTHO05D004594 0.0e+00 1275.4 851 73.7
Potri.004G185700 Populus trichocarpa HOM05D003289 ORTHO05D004594 0.0e+00 1275.0 851 73.3
Psat7g189880 Pisum sativum HOM05D003289 ORTHO05D004594 0.0e+00 1273.8 847 73.6
Glyma.12G087000 Glycine max HOM05D003289 ORTHO05D004594 0.0e+00 1273.5 864 72.8
Gorai.009G087200 Gossypium raimondii HOM05D003289 ORTHO05D004594 0.0e+00 1273.5 849 73.7
Sc21g0007220 Simmondsia chinensis HOM05D003289 ORTHO05D004594 0.0e+00 1273.1 851 72.7
CANSAT54G1671 Cannabis sativa HOM05D003289 ORTHO05D004594 0.0e+00 1272.7 849 73.0
Lj3g0000987 Lotus japonicus HOM05D003289 ORTHO05D004594 0.0e+00 1272.3 853 73.2
Duzib168G1226 Durio zibethinus HOM05D003289 ORTHO05D004594 0.0e+00 1271.1 851 73.6
Manes.04G006100 Manihot esculenta HOM05D003289 ORTHO05D004594 0.0e+00 1271.1 840 73.8
FvH4_3g29570 Fragaria vesca HOM05D003289 ORTHO05D004594 0.0e+00 1270.0 851 72.9
FAN11G3202 Fragaria x ananassa HOM05D003289 ORTHO05D004594 0.0e+00 1269.6 851 72.9
FAN21G1989 Fragaria x ananassa HOM05D003289 ORTHO05D004594 0.0e+00 1268.8 851 72.7
Sabra04G0125000 Salix brachista HOM05D003289 ORTHO05D004594 0.0e+00 1268.8 851 72.9
ClCG02G022050 Citrullus lanatus HOM05D003289 ORTHO05D004594 0.0e+00 1268.4 854 72.4
Ca_19261_v3 Cicer arietinum L. HOM05D003289 ORTHO05D004594 0.0e+00 1268.1 852 73.1
PSO425G0048 Papaver somniferum HOM05D003289 ORTHO05D004594 0.0e+00 1268.1 840 73.1
FAN16G3075 Fragaria x ananassa HOM05D003289 ORTHO05D004594 0.0e+00 1267.7 851 72.7
MD11G1160700 Malus domestica HOM05D003289 ORTHO05D004594 0.0e+00 1267.3 850 72.4
RcHm_v2.0_Chr5g0054631 Rosa chinensis HOM05D003289 ORTHO05D004594 0.0e+00 1266.9 851 72.9
Medtr4g054980 Medicago truncatula HOM05D003289 ORTHO05D004594 0.0e+00 1266.5 848 73.1
EL10Ac7g15792 Beta vulgaris HOM05D003289 ORTHO05D004594 0.0e+00 1266.1 847 72.7
Lalb_Chr19g0136661 Lupinus albus HOM05D003289 ORTHO05D004594 0.0e+00 1266.1 850 72.7
ATR0820G092 Amborella trichopoda HOM05D003289 ORTHO05D004594 0.0e+00 1264.2 836 73.9
AUR62039240 Chenopodium quinoa HOM05D003289 ORTHO05D004594 0.0e+00 1263.8 851 72.3
MD03G1139200 Malus domestica HOM05D003289 ORTHO05D004594 0.0e+00 1263.8 850 72.2
Sopen11g026820 Solanum pennellii HOM05D003289 ORTHO05D004594 0.0e+00 1263.4 849 72.3
Sed0008797 Sechium edule HOM05D003289 ORTHO05D004594 0.0e+00 1260.4 853 71.9
MELO3C021434.2 Cucumis melo HOM05D003289 ORTHO05D004594 0.0e+00 1260.0 854 71.9
CsaV3_6G014890 Cucumis sativus L. HOM05D003289 ORTHO05D004594 0.0e+00 1259.6 854 71.8
CAN.G644.7 Capsicum annuum HOM05D003289 ORTHO05D004594 0.0e+00 1258.8 853 71.9
Hund20868 Selenicereus undatus HOM05D003289 ORTHO05D004594 0.0e+00 1255.4 851 71.8
SalBow3G0618 Salvia bowleyana HOM05D003289 ORTHO05D004594 0.0e+00 1253.4 873 70.3
Phvul.011G091900 Phaseolus vulgaris HOM05D003289 ORTHO05D004594 0.0e+00 1252.7 860 71.2
VMungo1127G1826 Vigna mungo HOM05D003289 ORTHO05D004594 0.0e+00 1251.5 863 71.1
AT1G08260 Arabidopsis thaliana HOM05D003289 ORTHO05D004594 0.0e+00 1251.1 853 72.5
Thhalv10006524m.g Eutrema salsugineum HOM05D003289 ORTHO05D004594 0.0e+00 1250.0 853 72.3
COL.COLO4_19937 Corchorus olitorius HOM05D003289 ORTHO05D004594 0.0e+00 1247.3 860 72.3
THA.LOC104826411 Tarenaya hassleriana HOM05D003289 ORTHO05D004594 0.0e+00 1247.3 848 71.9
Zm00001eb241860 Zea mays HOM05D003289 ORTHO05D004594 0.0e+00 1247.3 836 72.4
AL1G18660 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 0.0e+00 1246.5 853 72.5
Carub.0001s0761 Capsella rubella HOM05D003289 ORTHO05D004594 0.0e+00 1245.0 853 72.2
Glyma.11G237700 Glycine max HOM05D003289 ORTHO05D004594 0.0e+00 1244.6 883 70.1
ECA233G3796 Erigeron canadensis HOM05D003289 ORTHO05D004594 0.0e+00 1243.8 849 71.5
Hma1.2p1_0305F.1_g119455 Hydrangea macrophylla HOM05D003289 ORTHO05D004594 0.0e+00 1243.4 774 77.4
SGA_v2.0_scaffold102G29919 Striga asiatica HOM05D003289 ORTHO05D004594 0.0e+00 1234.2 848 71.1
Sp1g06890 Schrenkiella parvula HOM05D003289 ORTHO05D004594 0.0e+00 1233.8 853 71.5
HanXRQChr05g0145141 Helianthus annuus HOM05D003289 ORTHO05D004594 0.0e+00 1232.2 848 71.0
SEGI_26591 Sequoiadendron giganteum HOM05D003289 ORTHO05D004594 0.0e+00 1230.7 832 71.8
CARHR008100 Cardamine hirsuta HOM05D003289 ORTHO05D004594 0.0e+00 1228.4 853 71.3
AUR62009793 Chenopodium quinoa HOM05D003289 ORTHO05D004594 0.0e+00 1226.8 899 68.0
Cc01_g09530 Coffea canephora HOM05D003289 ORTHO05D004594 0.0e+00 1221.8 944 65.6
A06p05280 Brassica napus HOM05D003289 ORTHO05D004594 0.0e+00 1219.1 897 68.1
BraA06t23736Z Brassica rapa HOM05D003289 ORTHO05D004594 0.0e+00 1218.4 897 68.2
AT2G27120 Arabidopsis thaliana HOM05D003289 ORTHO05D004594 0.0e+00 1216.4 846 71.4
BolC5t29391H Brassica oleracea HOM05D003289 ORTHO05D004594 0.0e+00 1214.9 897 68.0
C05p06350 Brassica napus HOM05D003289 ORTHO05D004594 0.0e+00 1214.5 897 67.9
AL4G20650 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 0.0e+00 1212.2 830 71.9
SHI18830 Sapria himalayana HOM05D003289 ORTHO05D004594 0.0e+00 1210.3 839 69.8
Oeu031488.2 Olea europaea HOM05D003289 ORTHO05D004594 0.0e+00 1204.5 905 66.9
Aa31LG2G19310 Aethionema arabicum HOM05D003289 ORTHO05D004594 0.0e+00 1199.1 885 67.9
CiPaw.13G138900 Carya illinoinensis HOM05D003289 ORTHO05D004594 0.0e+00 1191.0 850 69.2
vmacro03295 Vaccinium macrocarpon HOM05D003289 ORTHO05D004594 0.0e+00 1180.2 909 65.7
DCAR_012181 Daucus carota HOM05D003289 ORTHO05D004594 0.0e+00 1168.7 845 67.9
Lsat_1_v5_gn_6_39380 Lactuca sativa HOM05D003289 ORTHO05D004594 0.0e+00 1168.7 846 68.8
Pp3c13_4500 Physcomitrium patens HOM05D003289 ORTHO05D004594 0.0e+00 1167.9 857 65.9
Haze_23425 Corylus avellana HOM05D003289 ORTHO05D004594 0.0e+00 1166.0 824 69.8
AL4G20810 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 0.0e+00 1164.1 830 70.0
Lsat_1_v5_gn_6_39840 Lactuca sativa HOM05D003289 ORTHO05D004594 0.0e+00 1159.4 850 68.0
unitig_22.g6642 Utricularia gibba HOM05D003289 ORTHO05D004594 0.0e+00 1157.5 850 67.8
Mapoly0006s0290 Marchantia polymorpha HOM05D003289 ORTHO05D004594 0.0e+00 1148.3 846 66.1
AagrBONN_evm.TU.Sc2ySwM_340.389 Anthoceros agrestis HOM05D003289 ORTHO05D004594 0.0e+00 1142.5 857 66.0
HPP92_025278 Vanilla planifolia HOM05D003289 ORTHO05D004594 0.0e+00 1122.8 841 66.9
Lj2C988G5 Lonicera japonica HOM05D003289 ORTHO05D004594 0.0e+00 1114.0 870 65.1
SMO144G0205 Selaginella moellendorffii HOM05D003289 ORTHO05D004594 0.0e+00 1085.9 830 65.3
MBI15_g14875_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D004594 0.0e+00 1083.2 687 76.9
GSVIVG01031365001 Vitis vinifera HOM05D003289 ORTHO05D004594 2.7e-306 1055.0 1328 46.7
Gohir.D05G085400 Gossypium hirsutum HOM05D003289 ORTHO05D004594 2.6e-301 1038.5 644 77.8
CAN.G1177.10 Capsicum annuum HOM05D003289 ORTHO05D004594 1.8e-297 1025.8 723 70.5
MCO02G508 Micromonas commoda HOM05D003289 ORTHO05D004594 2.2e-287 992.3 878 56.8
ClCG09G020580 Citrullus lanatus HOM05D003289 ORTHO05D004594 2.7e-274 948.7 567 79.2
Aqoxy2G01337 Aquilegia oxysepala HOM05D003289 ORTHO05D004594 1.3e-271 939.9 530 83.8
CBR_g8395 Chara braunii HOM05D003289 ORTHO05D004594 9.8e-264 913.7 720 63.3
Os02g0511900 Oryza sativa ssp. japonica HOM05D003289 ORTHO05D004594 1.4e-262 909.8 634 69.6
MELO3C002892.2 Cucumis melo HOM05D003289 ORTHO05D004594 6.1e-258 894.4 861 56.0
PRCOL_00004747 Prasinoderma coloniale HOM05D003289 ORTHO05D004594 3.0e-257 892.1 839 53.9
TPR.G15595 Trifolium pratense HOM05D003289 ORTHO05D004594 7.5e-256 887.5 870 55.1
Migut.N02501 Erythranthe guttata HOM05D003289 ORTHO05D004594 1.4e-254 883.2 496 83.7
Cfa025881 Carpinus fangiana HOM05D003289 ORTHO05D004594 4.9e-231 805.1 771 52.3
Cre03.g179961 Chlamydomonas reinhardtii HOM05D003289 ORTHO05D004594 2.3e-204 716.5 947 43.8
Ah.08g215950 Amaranthus hybridus HOM05D003289 ORTHO05D004594 1.6e-194 683.7 479 69.7
Cpa.g.sc32.133 Carica papaya HOM05D003289 ORTHO05D004594 8.8e-180 634.8 417 74.1
HanXRQChr09g0249471 Helianthus annuus HOM05D003289 ORTHO05D004594 3.0e-164 583.2 375 74.9
Ah.08g215940 Amaranthus hybridus HOM05D003289 ORTHO05D004594 2.4e-153 547.0 314 81.5
CARHR038410 Cardamine hirsuta HOM05D003289 ORTHO05D004594 1.9e-150 537.3 427 64.4
Peaxi162Scf00544g00922 Petunia axillaris HOM05D003289 ORTHO05D004594 1.8e-145 520.8 412 63.8
Solyc11g067110.2 Solanum lycopersicum HOM05D003289 ORTHO05D004594 3.5e-144 516.5 422 61.6
QL02p000127 Quercus lobata HOM05D003289 ORTHO05D004594 7.8e-144 515.4 598 48.3
Nitab4.5_0003532g0040 Nicotiana tabacum HOM05D003289 ORTHO05D004594 3.3e-142 510.0 429 61.1
Nitab4.5_0004240g0050 Nicotiana tabacum HOM05D003289 ORTHO05D004594 1.2e-141 508.1 429 60.8
BcaB07g34067 Brassica carinata HOM05D003289 ORTHO05D004594 9.2e-137 491.9 371 68.7
Nitab4.5_0003532g0030 Nicotiana tabacum HOM05D003289 ORTHO05D004594 2.5e-118 430.6 240 82.9
Peaxi162Scf00544g00920 Petunia axillaris HOM05D003289 ORTHO05D004594 2.5e-118 430.6 240 82.5
Nitab4.5_0004240g0030 Nicotiana tabacum HOM05D003289 ORTHO05D004594 7.3e-118 429.1 240 82.5
TPR.G328 Trifolium pratense HOM05D003289 ORTHO05D004594 3.1e-100 370.5 220 81.4
HanXRQChr09g0249461 Helianthus annuus HOM05D003289 ORTHO05D004594 2.3e-95 354.4 231 71.0
arahy.Tifrunner.gnm1.ann1.B2Y78K Arachis hypogaea HOM05D003289 ORTHO05D004594 1.5e-94 351.7 280 64.6
Aqoxy16s008 Aquilegia oxysepala HOM05D003289 ORTHO05D004594 2.9e-90 337.4 294 61.2
Nitab4.5_0003532g0020 Nicotiana tabacum HOM05D003289 ORTHO05D004594 1.5e-86 325.1 188 83.5
Peaxi162Scf00544g00915 Petunia axillaris HOM05D003289 ORTHO05D004594 6.2e-85 319.7 186 82.8
Zm00001eb179700 Zea mays HOM05D003289 ORTHO05D004594 1.7e-82 311.6 177 81.9
Cpa.g.sc32.132 Carica papaya HOM05D003289 ORTHO05D004594 1.6e-77 295.0 237 62.4
MBI15_g40425_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D004594 5.5e-73 280.0 284 55.6
QL02p053680 Quercus lobata HOM05D003289 ORTHO05D004594 1.2e-64 252.3 156 75.0
QL12p004084 Quercus lobata HOM05D000176 ORTHO05D000106 6.7e-63 246.5 150 76.0
QL93p0107_0380 Quercus lobata HOM05D000370 ORTHO05D001335 6.7e-63 246.5 150 75.3
QL07p004315 Quercus lobata HOM05D000176 ORTHO05D000106 6.3e-61 240.0 150 74.0
Cpa.g.sc32.131 Carica papaya HOM05D003289 ORTHO05D004594 1.4e-60 238.8 124 88.7
Nitab4.5_0004240g0010 Nicotiana tabacum HOM05D003289 ORTHO05D004594 1.1e-52 212.6 113 89.4
QL09p040364 Quercus lobata HOM05D000370 ORTHO05D001335 5.0e-50 203.8 150 67.3
arahy.Tifrunner.gnm1.ann1.5H8JFW Arachis hypogaea HOM05D003289 ORTHO05D009167 5.2e-47 193.7 120 75.0
arahy.Tifrunner.gnm1.ann1.A3A4LS Arachis hypogaea HOM05D007426 ORTHO05D009167 1.6e-43 182.2 142 62.0
Gorai.005G156700 Gossypium raimondii HOM05D003289 ORTHO05D004594 1.6e-43 182.2 92 92.4
MBI15_g40424_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D004594 1.7e-42 178.7 118 67.8
Glyma.13G033700 Glycine max HOM05D003289 ORTHO05D004594 8.5e-42 176.4 85 94.1
Glyma.18G157402 Glycine max HOM05D003289 ORTHO05D004594 5.5e-41 173.7 85 91.8
Zm00001eb135070 Zea mays HOM05D003289 ORTHO05D034141 1.4e-39 169.1 185 51.4
arahy.Tifrunner.gnm1.ann1.183PB6 Arachis hypogaea HOM05D003289 ORTHO05D004594 9.1e-36 156.4 286 37.4
Aa31LG1G190 Aethionema arabicum HOM05D003289 ORTHO05D026451 1.0e-31 142.9 254 39.8
arahy.Tifrunner.gnm1.ann1.505PCM Arachis hypogaea HOM05D003289 ORTHO05D016559 5.7e-30 137.1 105 61.0
CANSAT25G1376 Cannabis sativa HOM05D003289 ORTHO05D004594 2.3e-26 125.2 61 86.9
COL.COLO4_06999 Corchorus olitorius HOM05D003289 ORTHO05D004594 3.6e-24 117.9 62 88.7
BolC5t29400H Brassica oleracea HOM05D003289 ORTHO05D004594 4.7e-24 117.5 138 47.1
Aa31LG1G200 Aethionema arabicum HOM05D003289 ORTHO05D004594 1.2e-22 112.8 81 70.4
arahy.Tifrunner.gnm1.ann1.98W5WM Arachis hypogaea HOM05D003289 ORTHO05D016559 5.2e-15 87.4 44 79.5
Zm00001eb147670 Zea mays HOM05D003289 ORTHO05D034141 5.2e-15 87.4 44 81.8
Gohir.D05G085450 Gossypium hirsutum HOM05D003289 ORTHO05D004594 6.8e-15 87.0 127 41.7
QL08p034398 Quercus lobata HOM05D000176 ORTHO05D000106 1.5e-14 85.9 58 63.8
QL06p043010 Quercus lobata HOM05D000529 ORTHO05D000472 2.6e-14 85.1 57 66.7
Cfa019187 Carpinus fangiana HOM05D003289 ORTHO05D034141 1.7e-13 82.4 42 81.0
Cpa.g.sc32.135 Carica papaya HOM05D003289 ORTHO05D004594 6.4e-13 80.5 140 37.1
PSO782G5595 Papaver somniferum HOM05D003289 ORTHO05D004594 8.3e-13 80.1 45 75.6
Phvul.003G000400 Phaseolus vulgaris HOM05D003289 ORTHO05D004594 1.1e-12 79.7 39 89.7
CARHR038400 Cardamine hirsuta HOM05D003289 ORTHO05D004594 7.0e-12 77.0 162 33.3
FAN25G3673 Fragaria x ananassa HOM05D003289 ORTHO05D004594 2.7e-11 75.1 146 36.3
QL05p087728 Quercus lobata HOM05D000176 ORTHO05D000106 6.6e-10 70.5 68 54.4
QL08p003473 Quercus lobata HOM05D000176 ORTHO05D005465 1.9e-09 68.9 68 52.9
Zm00001eb359770 Zea mays HOM05D001145 ORTHO05D001415 1.9e-09 68.9 43 74.4
arahy.Tifrunner.gnm1.ann1.1QTR5T Arachis hypogaea HOM05D003289 ORTHO05D084552 3.3e-09 68.2 40 77.5
Gohir.D02G140050 Gossypium hirsutum HOM05D003289 ORTHO05D004594 5.6e-09 67.4 33 97.0
arahy.Tifrunner.gnm1.ann1.JQS2KP Arachis hypogaea HOM05D003289 ORTHO05D023760 1.2e-08 66.2 40 75.0
Pp3c18_14020 Physcomitrium patens HOM05D003289 ORTHO05D004594 2.1e-08 65.5 138 36.2
arahy.Tifrunner.gnm1.ann1.P7LCTL Arachis hypogaea HOM05D000168 ORTHO05D086928 2.8e-08 65.1 36 83.3
Solyc10g081250.3 Solanum lycopersicum HOM05D002009 ORTHO05D005728 2.8e-08 65.1 338 22.5
Sopen10g031750 Solanum pennellii HOM05D002009 ORTHO05D005728 2.8e-08 65.1 338 22.5
MBI06_g01164_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D023760 1.5e-06 59.3 55 56.4
Cfa025827 Carpinus fangiana HOM05D002009 ORTHO05D005728 3.4e-06 58.2 366 22.7


User provided reference genes

Program Settings