Gene: ATR0820G092
General Information
Structural Information
- Species Amborella trichopoda
- Gene Identifier ATR0820G092
- Transcript Identifier ATR0820G092.1
- Gene Type Coding gene
- Location AmTr_v1.0_scaffold00040 : 2890891-2931305 : positive
Gene Family Information
- ID HOM05D003289
- #Genes/#Species 208/98
- Phylogenetic origin
- ID ORTHO05D004594
- #Genes/#Species 176/98
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- id evm_27.TU.AmTr_v1.0_scaffold00040.167.v1.0
- pacid 31568097
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006260 | IEA | InterPro | DNA replication | |
| GO:0006281 | IEA | InterPro | DNA repair | |
| GO:0010086 | ISO | PLAZA Integrative Orthology | embryonic root morphogenesis | AT1G08260 |
| GO:0051302 | ISO | PLAZA Integrative Orthology | regulation of cell division | AT1G08260 |
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT1G08260 |
| GO:0048579 | ISO | PLAZA Integrative Orthology | negative regulation of long-day photoperiodism, flowering | AT1G08260 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003887 | IEA | InterPro | DNA-directed DNA polymerase activity | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0000166 | IEA | InterPro | nucleotide binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G08260 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | InterPro | nucleus | |
| GO:0008622 | IEA | InterPro | epsilon DNA polymerase complex | |
| GO:0048046 | ISO | PLAZA Integrative Orthology | apoplast | AT1G08260 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR013697 | DNA polymerase epsilon, catalytic subunit A, C-terminal |
| IPR006134 | DNA-directed DNA polymerase, family B, multifunctional domain |
| IPR043502 | DNA/RNA polymerase superfamily |
| IPR012337 | Ribonuclease H-like superfamily |
| IPR023211 | DNA polymerase, palm domain superfamily |
| IPR006172 | DNA-directed DNA polymerase, family B |
| IPR042087 | DNA polymerase family B, thumb domain |
| IPR029703 | DNA polymerase epsilon catalytic subunit |
| IPR036397 | Ribonuclease H superfamily |
| IPR006133 | DNA-directed DNA polymerase, family B, exonuclease domain |
| Mapman id | Description |
|---|---|
| 13.2.3.3.1 | Cell cycle organisation.DNA replication.elongation.DNA polymerase epsilon complex.catalytic component POL2/POLE1 |