Gene: Sopen11g026820

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g026820
  • Transcript Identifier Sopen11g026820.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 62605317-62644462 : positive

Gene Family Information

  • ID HOM05D003289
  • #Genes/#Species 208/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g026820.1

Descriptions

  • Description Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells. | TILTED 1 (TIL1) | FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding, nucleotide binding, zinc ion binding, nucleic acid binding | INVOLVED IN: positive regulation of S phase of mitotic cell cycle, negative regulation of long-day photoperiodism, flowering, embryo development ending in seed dormancy | LOCATED IN: apoplast, epsilon DNA polymerase complex | EXPRESSED IN: 19 plant structures | EXPRESSED DURING: 12 growth stages | CONTAINS InterPro DOMAIN/s: DNA polymerase, family B , DNA-directed DNA polymerase, family B, exonuclease domain , Domain of unknown function DUF1744 , Polynucleotidyl transferase, ribonuclease H fold , DNA-directed DNA polymerase, family B, conserved region | BEST Arabidopsis thaliana protein match is: DNA polymerase epsilon catalytic subunit
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006260
IEA
InterProDNA replication
GO:0006281
IEA
InterProDNA repair
GO:0010086
ISO
PLAZA Integrative Orthologyembryonic root morphogenesis AT1G08260
GO:0051302
ISO
PLAZA Integrative Orthologyregulation of cell division AT1G08260
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT1G08260
GO:0048579
ISO
PLAZA Integrative Orthologynegative regulation of long-day photoperiodism, flowering AT1G08260

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003887
IEA
InterProDNA-directed DNA polymerase activity
GO:0008270
IEA
InterProzinc ion binding
GO:0003677
IEA
InterProDNA binding
GO:0000166
IEA
InterPronucleotide binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G08260

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus
GO:0008622
IEA
InterProepsilon DNA polymerase complex
GO:0048046
ISO
PLAZA Integrative Orthologyapoplast AT1G08260

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR042087 DNA polymerase family B, thumb domain
IPR023211 DNA polymerase, palm domain superfamily
IPR013697 DNA polymerase epsilon, catalytic subunit A, C-terminal
IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain
IPR029703 DNA polymerase epsilon catalytic subunit
IPR006172 DNA-directed DNA polymerase, family B
IPR012337 Ribonuclease H-like superfamily
IPR036397 Ribonuclease H superfamily
IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain
IPR043502 DNA/RNA polymerase superfamily
Mapman id Description
13.2.3.3.1 Cell cycle organisation.DNA replication.elongation.DNA polymerase epsilon complex.catalytic component POL2/POLE1