Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g50975 Chara braunii HOM05D005460 ORTHO05D008059 0.0e+00 3172.9 1618 100.0
AagrBONN_evm.TU.Sc2ySwM_344.3544 Anthoceros agrestis HOM05D005460 ORTHO05D008059 0.0e+00 1113.2 1145 51.4
Pp3c5_22230 Physcomitrium patens HOM05D005460 ORTHO05D008059 0.0e+00 1079.7 1153 48.6
MBI16_g07042_MAGBIO Magnolia biondii HOM05D005460 ORTHO05D008059 7.2e-269 931.8 1174 43.0
TAR629G3051 Trochodendron aralioides HOM05D005460 ORTHO05D008059 1.6e-268 930.6 1109 44.5
PSO478G1652 Papaver somniferum HOM05D005460 ORTHO05D008059 1.4e-261 907.5 868 52.9
Actinidia04798 Actinidia chinensis HOM05D005460 ORTHO05D008059 2.7e-260 903.3 859 53.0
CSS0025897 Camellia sinensis var. sinensis HOM05D005460 ORTHO05D008059 3.6e-260 902.9 863 52.7
Hund09954 Selenicereus undatus HOM05D005460 ORTHO05D008059 3.6e-260 902.9 1103 45.3
ECA232G2972 Erigeron canadensis HOM05D005460 ORTHO05D008059 3.0e-259 899.8 856 53.2
Nn3g17530 Nelumbo nucifera HOM05D005460 ORTHO05D008059 1.1e-258 897.9 857 51.9
GSVIVG01008151001 Vitis vinifera HOM05D005460 ORTHO05D008059 5.7e-258 895.6 875 51.9
Dinv07972 Davidia involucrata HOM05D005460 ORTHO05D008059 1.3e-257 894.4 863 52.8
QL10p020708 Quercus lobata HOM05D005460 ORTHO05D008059 2.4e-256 890.2 870 51.0
MELO3C017248.2 Cucumis melo HOM05D005460 ORTHO05D008059 3.1e-256 889.8 859 52.0
Lsat_1_v5_gn_4_113721 Lactuca sativa HOM05D005460 ORTHO05D008059 7.0e-256 888.6 858 52.3
Sc04g0003880 Simmondsia chinensis HOM05D005460 ORTHO05D008059 3.5e-255 886.3 861 52.5
COL.COLO4_27492 Corchorus olitorius HOM05D005460 ORTHO05D008059 5.9e-255 885.6 860 51.4
HanXRQChr09g0270461 Helianthus annuus HOM05D005460 ORTHO05D008059 5.9e-255 885.6 860 51.0
Aqoxy3G00547_Aqoxy3G00548 Aquilegia oxysepala HOM05D005460 ORTHO05D008059 1.3e-254 884.4 1129 43.8
Zm00001eb327130 Zea mays HOM05D005460 ORTHO05D008059 1.1e-253 881.3 950 48.8
CiPaw.15G113700 Carya illinoinensis HOM05D005460 ORTHO05D008059 1.9e-253 880.6 863 50.6
CsaV3_1G003350 Cucumis sativus L. HOM05D005460 ORTHO05D008059 1.2e-252 877.9 859 51.6
HPP92_007735 Vanilla planifolia HOM05D005460 ORTHO05D008059 1.2e-252 877.9 858 50.5
Migut.I00363 Erythranthe guttata HOM05D005460 ORTHO05D008059 1.6e-252 877.5 866 52.0
Thecc.03G107700 Theobroma cacao HOM05D005460 ORTHO05D008059 2.1e-252 877.1 861 51.7
Cc04_g08300 Coffea canephora HOM05D005460 ORTHO05D008059 8.0e-252 875.2 860 51.7
Sed0020336 Sechium edule HOM05D005460 ORTHO05D008059 3.3e-250 869.8 859 51.0
Cfa017734 Carpinus fangiana HOM05D005460 ORTHO05D008059 2.8e-249 866.7 860 50.3
Manes.06G081200 Manihot esculenta HOM05D005460 ORTHO05D008059 1.1e-248 864.8 859 50.6
TWI60G0358 Tripterygium wilfordii HOM05D005460 ORTHO05D008059 2.4e-248 863.6 889 49.9
TWI60G1488 Tripterygium wilfordii HOM05D005460 ORTHO05D008059 2.4e-248 863.6 889 49.9
Ciclev10018555m.g Citrus clementina HOM05D005460 ORTHO05D008059 3.1e-248 863.2 859 51.0
Sopen03g033860 Solanum pennellii HOM05D005460 ORTHO05D008059 5.3e-248 862.4 858 50.9
Peaxi162Scf00017g03272 Petunia axillaris HOM05D005460 ORTHO05D008059 1.2e-247 861.3 860 50.5
arahy.Tifrunner.gnm1.ann1.LBS82T Arachis hypogaea HOM05D005460 ORTHO05D008059 1.6e-247 860.9 857 49.8
Solyc03g114780.3 Solanum lycopersicum HOM05D005460 ORTHO05D008059 1.6e-247 860.9 858 50.8
Aa31LG3G18430 Aethionema arabicum HOM05D005460 ORTHO05D008059 2.0e-247 860.5 921 48.8
arahy.Tifrunner.gnm1.ann1.N0CKJ9 Arachis hypogaea HOM05D005460 ORTHO05D008059 2.7e-247 860.1 857 49.7
THA.LOC104818356 Tarenaya hassleriana HOM05D005460 ORTHO05D008059 4.5e-247 859.4 855 50.9
TPR.G14357 Trifolium pratense HOM05D005460 ORTHO05D008059 1.3e-246 857.8 856 49.5
Lj1g0006842 Lotus japonicus HOM05D005460 ORTHO05D008059 2.2e-246 857.1 856 50.1
Nitab4.5_0005994g0060 Nicotiana tabacum HOM05D005460 ORTHO05D008059 3.8e-246 856.3 864 50.3
Glyma.06G206000 Glycine max HOM05D005460 ORTHO05D008059 5.0e-246 855.9 854 50.1
Gorai.007G040200 Gossypium raimondii HOM05D005460 ORTHO05D008059 1.5e-245 854.4 830 51.1
Phvul.009G203700 Phaseolus vulgaris HOM05D005460 ORTHO05D008059 9.4e-245 851.7 854 50.5
Eucgr.K02548 Eucalyptus grandis HOM05D005460 ORTHO05D008059 1.2e-244 851.3 866 49.1
Medtr2g461560 Medicago truncatula HOM05D005460 ORTHO05D008059 6.1e-244 849.0 857 49.8
MSTRG.22948 Avicennia marina HOM05D005460 ORTHO05D008059 8.0e-244 848.6 854 50.0
VMungo1309G0936 Vigna mungo HOM05D005460 ORTHO05D008059 1.4e-243 847.8 854 50.5
Psat1g126760 Pisum sativum HOM05D005460 ORTHO05D008059 2.3e-243 847.0 856 49.3
SMO203G0199 Selaginella moellendorffii HOM05D005460 ORTHO05D008059 2.3e-243 847.0 1126 42.1
SGA_v2.0_scaffold25G10948 Striga asiatica HOM05D005460 ORTHO05D008059 2.3e-243 847.0 958 47.3
MD14G1216300 Malus domestica HOM05D005460 ORTHO05D008059 6.8e-243 845.5 858 50.5
C09p68840 Brassica napus HOM05D005460 ORTHO05D008059 2.6e-242 843.6 861 49.8
AUR62039669 Chenopodium quinoa HOM05D005460 ORTHO05D008059 1.3e-241 841.3 884 49.4
Oeu005512.2 Olea europaea HOM05D005460 ORTHO05D008059 1.3e-241 841.3 838 51.4
BolC9t59631H Brassica oleracea HOM05D005460 ORTHO05D008059 1.7e-241 840.9 858 49.8
Thhalv10012480m.g Eutrema salsugineum HOM05D005460 ORTHO05D008059 3.7e-241 839.7 849 49.9
Sp6g34850 Schrenkiella parvula HOM05D005460 ORTHO05D008059 2.4e-240 837.0 861 48.7
AL6G18480 Arabidopsis lyrata HOM05D005460 ORTHO05D008059 3.1e-240 836.6 858 49.3
RcHm_v2.0_Chr7g0183711 Rosa chinensis HOM05D005460 ORTHO05D008059 5.4e-240 835.9 866 48.8
CANSAT80G0202 Cannabis sativa HOM05D005460 ORTHO05D008059 7.0e-240 835.5 860 48.7
Carub.0006s0699 Capsella rubella HOM05D005460 ORTHO05D008059 2.0e-239 833.9 875 48.9
A10p28560 Brassica napus HOM05D005460 ORTHO05D008059 7.7e-239 832.0 849 50.1
Duzib068G0250 Durio zibethinus HOM05D005460 ORTHO05D008059 1.3e-238 831.2 866 49.5
AT5G08110 Arabidopsis thaliana HOM05D005460 ORTHO05D008059 1.1e-237 828.2 857 49.9
BraA10t44905Z Brassica rapa HOM05D005460 ORTHO05D008059 7.2e-237 825.5 846 49.9
Gohir.A11G034000 Gossypium hirsutum HOM05D005460 ORTHO05D008059 7.2e-237 825.5 860 49.1
Gohir.D11G037400 Gossypium hirsutum HOM05D005460 ORTHO05D008059 4.7e-236 822.8 860 48.8
Prupe.5G209800 Prunus persica HOM05D005460 ORTHO05D008059 6.1e-236 822.4 856 49.5
FAN08G0483 Fragaria x ananassa HOM05D005460 ORTHO05D008059 8.8e-235 818.5 869 48.8
Os02g0111900 Oryza sativa ssp. japonica HOM05D005460 ORTHO05D008059 5.7e-234 815.8 952 44.6
Lalb_Chr11g0071861 Lupinus albus HOM05D005460 ORTHO05D008059 1.7e-233 814.3 830 49.8
FvH4_5g13410 Fragaria vesca HOM05D005460 ORTHO05D008059 2.2e-233 813.9 869 48.4
EL10Ac5g11188 Beta vulgaris HOM05D005460 ORTHO05D008059 3.7e-233 813.1 1158 41.0
Cpa.g.sc3.237 Carica papaya HOM05D005460 ORTHO05D008059 7.0e-232 808.9 853 49.2
BcaB08g37287 Brassica carinata HOM05D005460 ORTHO05D008059 2.7e-231 807.0 862 48.5
ClCG06G015450 Citrullus lanatus HOM05D005460 ORTHO05D008059 1.0e-230 805.1 881 48.4
Lj9A438G54 Lonicera japonica HOM05D005460 ORTHO05D008059 2.3e-230 803.9 877 48.2
Rhsim08G0141800 Rhododendron simsii HOM05D005460 ORTHO05D008059 1.5e-229 801.2 1171 41.3
Haze_18509 Corylus avellana HOM05D005460 ORTHO05D008059 5.2e-227 792.7 907 46.2
FAN18G2313 Fragaria x ananassa HOM05D005460 ORTHO05D008059 3.7e-225 786.6 922 46.0
PGR031G2062 Punica granatum HOM05D005460 ORTHO05D008059 1.6e-223 781.2 863 47.2
Potri.012G063500 Populus trichocarpa HOM05D005460 ORTHO05D008059 7.3e-221 772.3 864 47.2
AUR62032136 Chenopodium quinoa HOM05D005460 ORTHO05D008059 1.0e-214 751.9 859 45.9
ATR0827G052 Amborella trichopoda HOM05D005460 ORTHO05D008059 5.8e-210 736.1 724 52.2
DCAR_011574 Daucus carota HOM05D005460 ORTHO05D008059 3.5e-207 726.9 691 51.7
Prupe.5G209300 Prunus persica HOM05D005460 ORTHO05D008059 8.4e-193 679.1 928 42.2
CARHR205080 Cardamine hirsuta HOM05D005460 ORTHO05D008059 1.9e-189 667.9 674 49.7
MCO09G659 Micromonas commoda HOM05D005460 ORTHO05D008059 3.3e-189 667.2 936 42.7
Nitab4.5_0002467g0140 Nicotiana tabacum HOM05D005460 ORTHO05D008059 2.4e-187 661.0 864 42.5
vmacro17637 Vaccinium macrocarpon HOM05D005460 ORTHO05D008059 3.8e-185 653.7 1285 33.1
Hma1.2p1_2037F.1_g311990 Hydrangea macrophylla HOM05D005460 ORTHO05D008059 9.6e-173 612.5 504 57.3
PGSC0003DMG400024525 Solanum tuberosum HOM05D005460 ORTHO05D008059 2.1e-159 568.2 498 54.6
PRCOL_00000536 Prasinoderma coloniale HOM05D005460 ORTHO05D008059 8.8e-150 536.2 1039 35.2
SEGI_08899 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 6.1e-143 513.5 388 61.3
CSS0043223 Camellia sinensis var. sinensis HOM05D005460 ORTHO05D008059 5.2e-142 510.4 453 54.5
Cre03.g187700 Chlamydomonas reinhardtii HOM05D005460 ORTHO05D008059 7.2e-136 490.0 1483 27.1
AagrBONN_evm.TU.Sc2ySwM_344.4214 Anthoceros agrestis HOM05D005460 ORTHO05D008059 1.6e-122 445.7 849 33.2
Pp3c7_15450 Physcomitrium patens HOM05D005460 ORTHO05D008059 3.6e-119 434.5 843 33.0
Pp3c7_15456 Physcomitrium patens HOM05D005460 ORTHO05D008059 3.6e-119 434.5 843 33.0
Pp3s405_10 Physcomitrium patens HOM05D005460 ORTHO05D008059 1.8e-115 422.2 836 32.5
Hma1.2p1_3034F.1_g331890 Hydrangea macrophylla HOM05D005460 ORTHO05D008059 6.0e-106 390.6 310 60.3
SHI17428 Sapria himalayana HOM05D005460 ORTHO05D008059 5.4e-91 340.9 343 49.9
MCO07G109 Micromonas commoda HOM05D005460 ORTHO05D008059 1.9e-88 332.4 929 30.0
FAN13G3146 Fragaria x ananassa HOM05D005460 ORTHO05D008059 4.9e-84 317.8 429 42.9
vmacro23112 Vaccinium macrocarpon HOM05D005460 ORTHO05D008059 3.9e-81 308.1 843 27.8
Ah.11g047430 Amaranthus hybridus HOM05D005460 ORTHO05D008059 4.4e-77 294.7 284 53.9
Ca_02784_v3 Cicer arietinum L. HOM05D005460 ORTHO05D008059 3.2e-75 288.5 254 54.3
SHI17427 Sapria himalayana HOM05D005460 ORTHO05D008059 2.5e-72 278.9 254 54.7
Ca_02783_v3 Cicer arietinum L. HOM05D005460 ORTHO05D008059 1.3e-68 266.5 240 52.5
Hma1.2p1_2037F.1_g311980 Hydrangea macrophylla HOM05D005460 ORTHO05D008059 8.1e-63 247.3 248 51.6
FAN13G2142 Fragaria x ananassa HOM05D005460 ORTHO05D008059 6.2e-55 221.1 406 34.0
SEGI_12628 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 1.2e-53 216.9 180 56.1
Cfa022214 Carpinus fangiana HOM05D005460 ORTHO05D124255 2.3e-41 176.0 764 23.3
Os07g0606500 Oryza sativa ssp. japonica HOM05D005460 ORTHO05D008059 3.2e-35 155.6 108 62.0
Potri.012G063201 Populus trichocarpa HOM05D005460 ORTHO05D008059 2.1e-34 152.9 151 48.3
SEGI_17125 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 4.1e-30 138.7 148 52.7
Lsat_1_v5_gn_1_69000 Lactuca sativa HOM05D005460 ORTHO05D048358 7.7e-29 134.4 97 66.0
SEGI_40089 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 1.1e-27 130.6 119 57.1
SEGI_08617 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 2.5e-19 102.8 157 35.0
QL01p024738 Quercus lobata HOM05D005460 ORTHO05D008059 6.7e-17 94.7 117 44.4
Ca_02785_v3 Cicer arietinum L. HOM05D005460 ORTHO05D008059 1.4e-14 87.0 95 41.1
SEGI_20731 Sequoiadendron giganteum HOM05D005460 ORTHO05D048358 2.7e-13 82.8 57 70.2
SEGI_23280 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 5.9e-13 81.6 68 51.5
Psat7g070520 Pisum sativum HOM05D005460 ORTHO05D008059 1.0e-12 80.9 116 38.8
Psat0s3496g0160 Pisum sativum HOM05D001876 ORTHO05D002002 6.5e-12 78.2 119 37.0
Mapoly0011s0057 Marchantia polymorpha HOM05D029505 ORTHO05D006869 7.2e-11 74.7 247 27.1
COL.COLO4_15612 Corchorus olitorius HOM05D067717 ORTHO05D044775 7.5e-08 64.7 185 30.8
MCO05G301 Micromonas commoda HOM05D000032 ORTHO05D004701 9.8e-08 64.3 158 28.5
Actinidia10444 Actinidia chinensis HOM05D005460 ORTHO05D056868 1.1e-06 60.8 31 74.2
BcaNung00645 Brassica carinata HOM05D000032 ORTHO05D007443 2.4e-06 59.7 240 27.1
A01p03610 Brassica napus HOM05D000032 ORTHO05D007443 2.4e-06 59.7 240 27.1
C01p03900 Brassica napus HOM05D000032 ORTHO05D007443 2.4e-06 59.7 240 27.1
BolC1t00383H Brassica oleracea HOM05D000032 ORTHO05D007443 2.4e-06 59.7 240 27.1
BraA01t00347Z Brassica rapa HOM05D000032 ORTHO05D007443 2.4e-06 59.7 240 27.1


User provided reference genes

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