Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR205080 Cardamine hirsuta HOM05D005460 ORTHO05D008059 0.0e+00 1300.4 630 100.0
Carub.0006s0699 Capsella rubella HOM05D005460 ORTHO05D008059 0.0e+00 1083.9 630 84.8
Sp6g34850 Schrenkiella parvula HOM05D005460 ORTHO05D008059 6.6e-303 1043.5 622 80.9
BolC9t59631H Brassica oleracea HOM05D005460 ORTHO05D008059 3.3e-302 1041.2 620 81.0
C09p68840 Brassica napus HOM05D005460 ORTHO05D008059 5.6e-302 1040.4 620 81.0
Thhalv10012480m.g Eutrema salsugineum HOM05D005460 ORTHO05D008059 9.5e-302 1039.6 627 81.0
Aa31LG3G18430 Aethionema arabicum HOM05D005460 ORTHO05D008059 1.3e-298 1029.2 608 81.2
A10p28560 Brassica napus HOM05D005460 ORTHO05D008059 2.7e-296 1021.5 608 81.4
BraA10t44905Z Brassica rapa HOM05D005460 ORTHO05D008059 2.7e-296 1021.5 611 81.0
AT5G08110 Arabidopsis thaliana HOM05D005460 ORTHO05D008059 1.2e-291 1006.1 624 79.5
AL6G18480 Arabidopsis lyrata HOM05D005460 ORTHO05D008059 2.2e-290 1001.9 625 79.4
THA.LOC104818356 Tarenaya hassleriana HOM05D005460 ORTHO05D008059 1.9e-286 988.8 625 76.6
BcaB08g37287 Brassica carinata HOM05D005460 ORTHO05D008059 1.7e-282 975.7 623 76.7
COL.COLO4_27492 Corchorus olitorius HOM05D005460 ORTHO05D008059 8.1e-269 930.2 619 71.6
Thecc.03G107700 Theobroma cacao HOM05D005460 ORTHO05D008059 4.9e-266 921.0 619 71.2
Ciclev10018555m.g Citrus clementina HOM05D005460 ORTHO05D008059 1.4e-260 902.9 619 69.3
CSS0025897 Camellia sinensis var. sinensis HOM05D005460 ORTHO05D008059 2.1e-256 889.0 626 66.9
Actinidia04798 Actinidia chinensis HOM05D005460 ORTHO05D008059 7.9e-256 887.1 630 67.3
Manes.06G081200 Manihot esculenta HOM05D005460 ORTHO05D008059 1.0e-255 886.7 619 69.1
GSVIVG01008151001 Vitis vinifera HOM05D005460 ORTHO05D008059 3.7e-253 878.2 628 67.4
Gorai.007G040200 Gossypium raimondii HOM05D005460 ORTHO05D008059 2.6e-251 872.1 587 70.7
Dinv07972 Davidia involucrata HOM05D005460 ORTHO05D008059 4.5e-251 871.3 655 65.2
TWI60G0358 Tripterygium wilfordii HOM05D005460 ORTHO05D008059 5.8e-251 870.9 624 67.1
TWI60G1488 Tripterygium wilfordii HOM05D005460 ORTHO05D008059 5.8e-251 870.9 624 67.1
QL10p020708 Quercus lobata HOM05D005460 ORTHO05D008059 1.0e-250 870.2 622 66.9
CiPaw.15G113700 Carya illinoinensis HOM05D005460 ORTHO05D008059 3.8e-250 868.2 623 66.3
TAR629G3051 Trochodendron aralioides HOM05D005460 ORTHO05D008059 1.1e-249 866.7 621 66.2
Cfa017734 Carpinus fangiana HOM05D005460 ORTHO05D008059 1.2e-248 863.2 624 65.9
Rhsim08G0141800 Rhododendron simsii HOM05D005460 ORTHO05D008059 3.9e-247 858.2 655 64.0
MELO3C017248.2 Cucumis melo HOM05D005460 ORTHO05D008059 6.7e-247 857.4 618 66.2
CsaV3_1G003350 Cucumis sativus L. HOM05D005460 ORTHO05D008059 8.7e-247 857.1 618 66.3
Lj1g0006842 Lotus japonicus HOM05D005460 ORTHO05D008059 1.5e-246 856.3 618 66.3
Cpa.g.sc3.237 Carica papaya HOM05D005460 ORTHO05D008059 5.7e-246 854.4 618 68.4
HanXRQChr09g0270461 Helianthus annuus HOM05D005460 ORTHO05D008059 5.7e-246 854.4 626 65.8
Sed0020336 Sechium edule HOM05D005460 ORTHO05D008059 9.7e-246 853.6 618 65.7
AUR62039669 Chenopodium quinoa HOM05D005460 ORTHO05D008059 2.8e-245 852.0 609 66.8
Gohir.D11G037400 Gossypium hirsutum HOM05D005460 ORTHO05D008059 3.7e-245 851.7 619 66.9
Gohir.A11G034000 Gossypium hirsutum HOM05D005460 ORTHO05D008059 1.4e-244 849.7 622 66.2
RcHm_v2.0_Chr7g0183711 Rosa chinensis HOM05D005460 ORTHO05D008059 1.4e-244 849.7 618 66.2
SGA_v2.0_scaffold25G10948 Striga asiatica HOM05D005460 ORTHO05D008059 2.4e-244 849.0 628 65.6
Duzib068G0250 Durio zibethinus HOM05D005460 ORTHO05D008059 3.1e-244 848.6 627 66.3
Sc04g0003880 Simmondsia chinensis HOM05D005460 ORTHO05D008059 3.1e-244 848.6 628 65.9
ECA232G2972 Erigeron canadensis HOM05D005460 ORTHO05D008059 6.9e-244 847.4 625 65.1
Sopen03g033860 Solanum pennellii HOM05D005460 ORTHO05D008059 2.9e-242 842.0 626 65.3
Cc04_g08300 Coffea canephora HOM05D005460 ORTHO05D008059 3.8e-242 841.6 624 65.2
DCAR_011574 Daucus carota HOM05D005460 ORTHO05D008059 3.8e-242 841.6 625 64.6
MSTRG.22948 Avicennia marina HOM05D005460 ORTHO05D008059 1.4e-241 839.7 619 65.3
Glyma.06G206000 Glycine max HOM05D005460 ORTHO05D008059 1.4e-241 839.7 618 65.5
Migut.I00363 Erythranthe guttata HOM05D005460 ORTHO05D008059 2.5e-241 839.0 626 64.2
arahy.Tifrunner.gnm1.ann1.LBS82T Arachis hypogaea HOM05D005460 ORTHO05D008059 5.5e-241 837.8 626 65.3
Peaxi162Scf00017g03272 Petunia axillaris HOM05D005460 ORTHO05D008059 1.2e-240 836.6 629 64.7
Solyc03g114780.3 Solanum lycopersicum HOM05D005460 ORTHO05D008059 1.2e-240 836.6 626 65.2
arahy.Tifrunner.gnm1.ann1.N0CKJ9 Arachis hypogaea HOM05D005460 ORTHO05D008059 1.6e-240 836.3 626 65.2
FvH4_5g13410 Fragaria vesca HOM05D005460 ORTHO05D008059 4.6e-240 834.7 620 66.6
Nn3g17530 Nelumbo nucifera HOM05D005460 ORTHO05D008059 7.9e-240 833.9 617 65.0
VMungo1309G0936 Vigna mungo HOM05D005460 ORTHO05D008059 2.5e-238 828.9 617 64.5
Lsat_1_v5_gn_4_113721 Lactuca sativa HOM05D005460 ORTHO05D008059 4.3e-238 828.2 633 62.9
MBI16_g07042_MAGBIO Magnolia biondii HOM05D005460 ORTHO05D008059 9.7e-238 827.0 671 60.7
FAN08G0483 Fragaria x ananassa HOM05D005460 ORTHO05D008059 2.8e-237 825.5 618 65.9
Oeu005512.2 Olea europaea HOM05D005460 ORTHO05D008059 3.7e-237 825.1 651 62.5
Hund09954 Selenicereus undatus HOM05D005460 ORTHO05D008059 3.7e-237 825.1 658 61.4
PSO478G1652 Papaver somniferum HOM05D005460 ORTHO05D008059 8.2e-237 823.9 621 62.3
Eucgr.K02548 Eucalyptus grandis HOM05D005460 ORTHO05D008059 3.1e-236 822.0 627 63.8
Psat1g126760 Pisum sativum HOM05D005460 ORTHO05D008059 4.1e-236 821.6 619 64.5
Phvul.009G203700 Phaseolus vulgaris HOM05D005460 ORTHO05D008059 5.3e-236 821.2 617 64.0
Nitab4.5_0005994g0060 Nicotiana tabacum HOM05D005460 ORTHO05D008059 1.5e-235 819.7 633 63.8
EL10Ac5g11188 Beta vulgaris HOM05D005460 ORTHO05D008059 4.5e-235 818.1 640 62.7
TPR.G14357 Trifolium pratense HOM05D005460 ORTHO05D008059 1.0e-234 817.0 618 63.8
FAN18G2313 Fragaria x ananassa HOM05D005460 ORTHO05D008059 3.2e-233 812.0 637 63.7
MD14G1216300 Malus domestica HOM05D005460 ORTHO05D008059 9.4e-233 810.4 621 63.3
Medtr2g461560 Medicago truncatula HOM05D005460 ORTHO05D008059 1.0e-231 807.0 618 63.6
Prupe.5G209800 Prunus persica HOM05D005460 ORTHO05D008059 3.3e-230 802.0 619 62.5
AUR62032136 Chenopodium quinoa HOM05D005460 ORTHO05D008059 1.7e-229 799.7 595 65.0
CANSAT80G0202 Cannabis sativa HOM05D005460 ORTHO05D008059 9.1e-228 793.9 619 61.4
Aqoxy3G00547_Aqoxy3G00548 Aquilegia oxysepala HOM05D005460 ORTHO05D008059 5.9e-227 791.2 626 62.1
Potri.012G063500 Populus trichocarpa HOM05D005460 ORTHO05D008059 5.5e-225 784.6 623 62.9
Lalb_Chr11g0071861 Lupinus albus HOM05D005460 ORTHO05D008059 1.2e-224 783.5 593 64.8
Haze_18509 Corylus avellana HOM05D005460 ORTHO05D008059 1.6e-224 783.1 672 58.3
Lj9A438G54 Lonicera japonica HOM05D005460 ORTHO05D008059 1.1e-222 776.9 642 61.8
Zm00001eb327130 Zea mays HOM05D005460 ORTHO05D008059 1.0e-218 763.8 623 60.7
ClCG06G015450 Citrullus lanatus HOM05D005460 ORTHO05D008059 1.5e-217 760.0 609 61.9
HPP92_007735 Vanilla planifolia HOM05D005460 ORTHO05D008059 1.9e-217 759.6 616 60.7
PGR031G2062 Punica granatum HOM05D005460 ORTHO05D008059 6.3e-213 744.6 621 60.5
Hma1.2p1_2037F.1_g311990 Hydrangea macrophylla HOM05D005460 ORTHO05D008059 8.0e-208 727.6 503 68.4
AagrBONN_evm.TU.Sc2ySwM_344.3544 Anthoceros agrestis HOM05D005460 ORTHO05D008059 2.2e-205 719.5 624 54.6
Os02g0111900 Oryza sativa ssp. japonica HOM05D005460 ORTHO05D008059 1.6e-203 713.4 622 56.3
Pp3c5_22230 Physcomitrium patens HOM05D005460 ORTHO05D008059 4.2e-201 705.3 630 53.7
PGSC0003DMG400024525 Solanum tuberosum HOM05D005460 ORTHO05D008059 2.3e-199 699.5 502 65.9
vmacro17637 Vaccinium macrocarpon HOM05D005460 ORTHO05D008059 1.7e-194 683.3 1035 40.3
Prupe.5G209300 Prunus persica HOM05D005460 ORTHO05D008059 1.6e-192 676.8 675 52.0
SMO203G0199 Selaginella moellendorffii HOM05D005460 ORTHO05D008059 4.7e-192 675.2 643 51.8
CBR_g50975 Chara braunii HOM05D005460 ORTHO05D008059 1.5e-190 670.2 674 49.7
CSS0043223 Camellia sinensis var. sinensis HOM05D005460 ORTHO05D008059 2.4e-172 609.8 453 63.6
ATR0827G052 Amborella trichopoda HOM05D005460 ORTHO05D008059 5.4e-172 608.6 485 61.2
Nitab4.5_0002467g0140 Nicotiana tabacum HOM05D005460 ORTHO05D008059 2.5e-161 573.2 633 49.0
Hma1.2p1_3034F.1_g331890 Hydrangea macrophylla HOM05D005460 ORTHO05D008059 3.9e-138 496.1 311 75.6
MCO09G659 Micromonas commoda HOM05D005460 ORTHO05D008059 1.3e-136 491.1 675 41.0
SHI17428 Sapria himalayana HOM05D005460 ORTHO05D008059 4.3e-129 466.1 342 66.4
SEGI_08899 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 4.1e-127 459.5 386 55.4
vmacro23112 Vaccinium macrocarpon HOM05D005460 ORTHO05D008059 2.3e-106 390.6 843 32.3
PRCOL_00000536 Prasinoderma coloniale HOM05D005460 ORTHO05D008059 9.7e-105 385.2 818 32.6
Ca_02784_v3 Cicer arietinum L. HOM05D005460 ORTHO05D008059 2.6e-97 360.5 251 68.5
Cre03.g187700 Chlamydomonas reinhardtii HOM05D005460 ORTHO05D008059 2.2e-96 357.5 717 32.9
AagrBONN_evm.TU.Sc2ySwM_344.4214 Anthoceros agrestis HOM05D005460 ORTHO05D008059 9.2e-79 298.9 617 30.1
Pp3s405_10 Physcomitrium patens HOM05D005460 ORTHO05D008059 4.6e-78 296.6 594 33.0
Pp3c7_15450 Physcomitrium patens HOM05D005460 ORTHO05D008059 8.6e-77 292.4 627 32.9
Pp3c7_15456 Physcomitrium patens HOM05D005460 ORTHO05D008059 8.6e-77 292.4 627 32.9
FAN13G2142 Fragaria x ananassa HOM05D005460 ORTHO05D008059 2.6e-73 280.8 404 41.3
MCO07G109 Micromonas commoda HOM05D005460 ORTHO05D008059 6.8e-66 256.1 611 30.8
FAN13G3146 Fragaria x ananassa HOM05D005460 ORTHO05D008059 1.4e-58 231.9 175 65.7
Potri.012G063201 Populus trichocarpa HOM05D005460 ORTHO05D008059 1.2e-46 192.2 151 61.6
Lsat_1_v5_gn_1_69000 Lactuca sativa HOM05D005460 ORTHO05D048358 3.1e-34 151.0 97 73.2
Ah.11g047430 Amaranthus hybridus HOM05D005460 ORTHO05D008059 6.9e-34 149.8 88 76.1
Cfa022214 Carpinus fangiana HOM05D005460 ORTHO05D124255 1.9e-31 141.7 624 23.7
SHI17427 Sapria himalayana HOM05D005460 ORTHO05D008059 3.2e-31 141.0 77 85.7
SEGI_12628 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 5.1e-29 133.7 91 63.7
Psat0s3496g0160 Pisum sativum HOM05D001876 ORTHO05D002002 2.1e-22 111.7 98 53.1
Hma1.2p1_2037F.1_g311980 Hydrangea macrophylla HOM05D005460 ORTHO05D008059 3.9e-21 107.5 54 87.0
Os07g0606500 Oryza sativa ssp. japonica HOM05D005460 ORTHO05D008059 4.3e-20 104.0 54 79.6
Ca_02783_v3 Cicer arietinum L. HOM05D005460 ORTHO05D008059 1.6e-19 102.1 70 68.6
Ca_02785_v3 Cicer arietinum L. HOM05D005460 ORTHO05D008059 1.6e-19 102.1 82 59.8
SEGI_23280 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 2.7e-14 84.7 68 54.4
SEGI_20731 Sequoiadendron giganteum HOM05D005460 ORTHO05D048358 3.0e-13 81.3 58 67.2
Carub.0007s0451 Capsella rubella HOM05D000246 ORTHO05D002923 7.2e-07 60.1 323 22.3
Zm00001eb257010 Zea mays HOM05D000246 ORTHO05D002923 1.2e-06 59.3 104 29.8
PSO135G0853 Papaver somniferum HOM05D000246 ORTHO05D002923 1.6e-06 58.9 104 28.8
PSO724G0110 Papaver somniferum HOM05D000246 ORTHO05D002923 3.6e-06 57.8 98 30.6
Actinidia10444 Actinidia chinensis HOM05D005460 ORTHO05D056868 4.6e-06 57.4 101 34.7
Lsat_1_v5_gn_8_85621 Lactuca sativa HOM05D000246 ORTHO05D002923 4.6e-06 57.4 101 30.7
Hund25439 Selenicereus undatus HOM05D000246 ORTHO05D008363 6.1e-06 57.0 70 35.7
Eucgr.C03309 Eucalyptus grandis HOM05D000246 ORTHO05D002923 7.9e-06 56.6 104 28.8
HanXRQChr04g0125951 Helianthus annuus HOM05D000246 ORTHO05D002923 7.9e-06 56.6 101 31.7


User provided reference genes

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