Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 0.0e+00 1880.9 955 100.0
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 0.0e+00 1731.5 972 90.7
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 0.0e+00 1721.4 978 90.1
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 0.0e+00 1721.1 981 90.0
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 0.0e+00 1700.3 974 89.1
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1693.7 985 88.6
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 0.0e+00 1693.3 972 89.4
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 0.0e+00 1688.7 971 89.0
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1684.1 988 88.3
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 0.0e+00 1684.1 988 88.3
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 0.0e+00 1615.5 959 85.8
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 0.0e+00 1570.8 965 82.9
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 0.0e+00 1476.5 962 78.2
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 0.0e+00 1472.2 959 78.6
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 0.0e+00 1470.7 962 78.6
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1469.9 957 78.1
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1468.8 966 77.2
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1464.5 962 76.7
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1462.6 963 76.9
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 0.0e+00 1456.0 964 77.3
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 0.0e+00 1455.3 965 76.9
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 0.0e+00 1454.9 966 76.8
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 0.0e+00 1454.9 965 76.3
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1454.9 967 76.0
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1454.1 965 76.2
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1452.2 961 76.3
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1451.4 957 77.3
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 0.0e+00 1449.1 912 77.6
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1448.3 960 77.1
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 0.0e+00 1448.0 956 76.6
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1446.8 963 76.4
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 0.0e+00 1446.4 988 75.1
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 0.0e+00 1446.4 960 75.9
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1444.9 964 76.0
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1444.9 959 77.2
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1444.5 962 75.7
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 0.0e+00 1444.5 962 76.3
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1442.6 958 75.2
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 0.0e+00 1442.6 914 78.0
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 0.0e+00 1439.9 960 75.2
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 0.0e+00 1439.1 915 77.4
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1436.8 958 75.2
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 0.0e+00 1436.8 972 75.7
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1436.4 963 75.5
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1436.0 968 75.3
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1435.6 952 75.6
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 0.0e+00 1432.9 970 75.7
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 0.0e+00 1432.9 962 75.3
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1432.5 956 75.3
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1430.2 966 75.3
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 0.0e+00 1430.2 957 74.9
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 0.0e+00 1428.3 968 75.4
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1426.8 957 75.7
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1425.6 961 75.8
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1425.6 954 76.1
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 0.0e+00 1425.2 916 77.0
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1424.8 962 75.9
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1424.1 959 75.1
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 0.0e+00 1422.9 963 75.1
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1421.0 962 74.9
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1419.1 955 74.8
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 0.0e+00 1417.1 962 74.8
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1416.7 963 75.3
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1416.4 965 75.2
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 0.0e+00 1414.8 964 75.5
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1414.1 961 74.3
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1412.1 960 75.0
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1412.1 966 74.1
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1412.1 956 74.2
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1411.0 956 74.0
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 0.0e+00 1405.2 956 74.5
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1405.2 959 75.5
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 0.0e+00 1404.4 966 74.1
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 0.0e+00 1403.3 961 74.3
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1403.3 956 74.9
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1403.3 964 73.7
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1401.3 956 74.9
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1399.4 966 74.0
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1398.6 969 73.8
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1396.3 985 71.7
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1393.3 977 73.1
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 0.0e+00 1390.9 962 73.4
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1387.1 970 73.0
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1387.1 916 74.3
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1382.5 921 73.6
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1374.4 964 73.5
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 0.0e+00 1370.9 964 72.8
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1370.5 976 71.8
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1368.2 925 72.1
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1362.4 965 72.2
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 0.0e+00 1360.1 959 73.2
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 0.0e+00 1355.1 957 71.8
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1353.6 927 73.9
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 0.0e+00 1353.6 951 71.4
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 0.0e+00 1349.3 1184 62.3
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1339.7 953 70.5
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1333.2 912 74.7
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 0.0e+00 1328.9 962 67.8
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 0.0e+00 1318.5 923 71.8
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 0.0e+00 1318.1 950 68.2
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 0.0e+00 1312.7 846 76.2
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1310.0 925 70.1
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 0.0e+00 1309.7 922 70.6
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1287.7 909 69.6
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1286.9 833 75.5
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1279.6 965 68.9
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 0.0e+00 1275.8 920 68.4
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 0.0e+00 1252.7 933 68.8
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1247.3 786 79.4
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1241.5 927 68.3
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 0.0e+00 1239.2 786 78.2
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 0.0e+00 1180.6 933 62.2
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1177.2 784 72.7
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1163.7 727 78.0
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1106.7 974 60.8
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 0.0e+00 1106.3 984 58.0
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 0.0e+00 1082.8 987 56.6
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 1.3e-307 1059.7 954 59.1
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 1.9e-306 1055.8 929 56.8
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 9.6e-306 1053.5 690 75.1
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 4.6e-292 1008.1 720 73.1
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 2.7e-284 982.2 658 74.3
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 4.5e-279 964.9 786 60.2
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 5.0e-262 908.3 588 76.5
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 9.8e-258 894.0 673 69.4
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 5.1e-230 802.0 563 71.0
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 1.4e-219 767.3 525 73.5
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 4.9e-209 732.3 603 63.8
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 3.8e-201 706.1 503 70.0
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 1.3e-196 691.0 443 80.1
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.1e-175 620.5 386 77.5
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.1e-173 614.8 363 81.0
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 2.4e-171 607.1 1036 37.5
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 2.5e-144 517.3 408 62.5
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 5.5e-144 516.2 416 61.3
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 3.4e-141 506.9 824 37.6
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 3.2e-115 420.6 462 52.2
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 6.8e-110 402.9 224 87.1
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 6.8e-110 402.9 253 76.7
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 5.1e-105 386.7 874 33.3
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 8.7e-105 386.0 1051 27.1
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 7.3e-104 382.9 279 68.5
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 1.2e-93 349.0 253 68.0
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 1.2e-93 349.0 253 68.0
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 8.1e-87 326.2 365 44.4
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 6.9e-86 323.2 253 66.8
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 1.9e-80 305.1 301 56.8
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 1.4e-54 219.2 146 71.2
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 9.4e-51 206.5 169 53.3
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 1.1e-48 199.5 149 62.4
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 1.1e-48 199.5 149 62.4
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 2.0e-45 188.7 139 63.3
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.9e-43 182.2 251 47.0
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 4.0e-41 174.5 99 84.8
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 1.3e-39 169.5 104 80.8
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 7.0e-38 163.7 118 66.1
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 4.5e-37 161.0 142 50.7
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 4.2e-35 154.5 141 59.6
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 6.1e-34 150.6 662 23.1
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.3e-33 148.7 76 86.8
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.0e-33 147.9 76 86.8
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.0e-33 147.9 79 84.8
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 6.8e-33 147.1 76 85.5
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 3.4e-32 144.8 177 45.8
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 3.7e-31 141.4 80 78.8
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 6.3e-31 140.6 84 78.6
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 1.8e-30 139.0 115 63.5
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 3.5e-29 134.8 127 57.5
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 5.9e-29 134.0 88 73.9
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 5.5e-27 127.5 65 90.8
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 8.9e-25 120.2 79 78.5
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 6.3e-23 114.0 148 42.6
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 1.3e-20 106.3 143 47.6
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 1.8e-17 95.9 123 42.3
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 1.2e-16 93.2 122 47.5
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 7.5e-16 90.5 82 56.1
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 2.2e-15 89.0 116 43.1
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 1.8e-09 69.3 56 58.9
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 2.0e-08 65.9 46 60.9
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 5.8e-08 64.3 46 54.3
Pp3c9_21930 Physcomitrium patens HOM05D003791 ORTHO05D308914 3.2e-06 58.5 48 54.2


User provided reference genes

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