Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 0.0e+00 1876.3 962 100.0
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1619.4 964 85.4
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 0.0e+00 1612.8 963 86.0
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 0.0e+00 1609.0 966 85.9
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 0.0e+00 1608.6 963 85.9
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1596.6 963 83.9
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1596.6 960 84.3
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1595.5 961 84.0
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 0.0e+00 1594.3 961 84.1
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 0.0e+00 1592.4 961 84.9
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1590.9 962 83.8
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 0.0e+00 1588.5 962 83.6
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1588.2 960 83.6
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1588.2 961 84.7
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 0.0e+00 1587.8 987 83.6
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1587.0 965 84.2
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 0.0e+00 1585.5 915 85.8
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1577.4 965 82.2
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1575.1 964 82.8
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1574.3 961 83.1
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 0.0e+00 1574.3 918 84.5
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1573.1 962 83.8
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 0.0e+00 1572.8 966 84.1
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1571.6 963 83.9
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 0.0e+00 1571.2 915 85.5
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1571.2 963 83.4
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1567.7 962 83.5
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 0.0e+00 1567.4 965 82.4
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 0.0e+00 1565.8 966 82.9
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 0.0e+00 1561.6 966 82.7
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 0.0e+00 1559.7 966 82.9
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1558.9 966 82.7
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1558.9 964 83.8
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1558.5 962 83.2
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 0.0e+00 1558.5 964 82.1
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 0.0e+00 1557.7 963 81.9
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 0.0e+00 1557.3 964 83.5
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1556.2 964 83.1
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 0.0e+00 1555.8 964 81.6
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 0.0e+00 1554.7 966 82.6
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1553.9 960 82.9
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1551.2 963 82.7
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1550.0 962 82.0
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 0.0e+00 1550.0 917 83.6
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1549.6 969 83.0
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1549.3 963 82.7
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1548.1 969 82.8
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1546.9 973 82.7
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1546.2 961 82.5
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1546.2 962 82.0
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1543.9 963 82.3
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1541.9 968 81.9
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 0.0e+00 1533.5 968 81.8
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1531.5 964 82.2
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1527.3 965 80.3
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 0.0e+00 1527.3 964 80.5
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1523.5 963 81.9
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1523.1 969 81.6
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1520.0 969 79.9
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 0.0e+00 1513.4 963 79.5
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 0.0e+00 1513.0 965 80.0
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1508.8 967 79.6
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1506.5 982 78.4
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1506.5 961 79.2
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 0.0e+00 1505.0 961 79.3
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1505.0 961 80.5
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1503.4 961 79.1
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 0.0e+00 1500.3 963 80.0
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 0.0e+00 1498.0 962 79.8
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1496.9 966 79.7
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1492.2 923 80.5
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1486.1 994 76.8
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1484.9 921 77.9
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1483.8 917 79.7
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1482.2 988 76.6
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 0.0e+00 1480.3 972 78.5
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1478.0 982 78.2
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1476.5 983 78.0
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 0.0e+00 1476.5 983 78.0
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 0.0e+00 1474.5 970 79.0
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 0.0e+00 1469.1 968 78.0
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 0.0e+00 1467.6 960 77.3
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 0.0e+00 1466.4 969 78.5
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1464.5 970 78.7
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 0.0e+00 1464.5 968 77.6
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1459.1 965 78.2
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 0.0e+00 1456.8 978 77.5
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 0.0e+00 1456.8 964 77.3
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 0.0e+00 1456.0 976 77.8
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 0.0e+00 1455.7 1191 66.6
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1454.9 963 77.4
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1453.7 965 77.5
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 0.0e+00 1449.1 963 77.3
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1448.3 953 77.8
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 0.0e+00 1439.5 925 78.5
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 0.0e+00 1431.0 963 76.6
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 0.0e+00 1429.8 962 74.5
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1411.0 833 83.3
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1407.9 913 78.4
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 0.0e+00 1405.2 844 81.0
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 0.0e+00 1398.6 972 72.3
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1391.7 962 73.1
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1382.1 970 75.4
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 0.0e+00 1380.2 961 70.3
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 0.0e+00 1361.3 924 72.8
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1344.7 914 72.0
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1334.3 924 72.7
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 0.0e+00 1332.8 964 70.9
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 0.0e+00 1329.7 936 72.1
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1310.8 788 83.6
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 0.0e+00 1281.5 786 80.7
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 0.0e+00 1239.9 927 65.5
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1230.3 726 82.9
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1204.1 787 74.0
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1179.5 943 64.1
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1174.1 690 84.6
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 0.0e+00 1147.5 984 59.6
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 0.0e+00 1145.2 995 60.2
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 0.0e+00 1137.5 962 63.2
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 0.0e+00 1115.1 968 59.6
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 0.0e+00 1091.3 726 79.1
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 2.4e-288 995.7 661 76.1
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 3.8e-286 988.4 786 60.8
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 3.6e-276 955.3 671 75.0
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 8.6e-262 907.5 591 77.3
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.1e-259 900.6 564 79.6
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 1.1e-248 864.0 529 82.2
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 3.9e-238 828.9 604 72.8
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 8.7e-230 801.2 501 78.6
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 2.5e-208 729.9 441 86.6
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 4.7e-191 672.5 386 84.5
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 5.0e-177 625.9 1035 38.1
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.1e-176 624.8 403 81.6
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 4.1e-155 553.1 418 65.6
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 4.6e-146 523.1 415 62.9
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 9.9e-141 505.4 820 37.3
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 5.1e-129 466.5 480 55.4
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 3.7e-111 407.1 1050 27.8
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 1.1e-110 405.6 253 79.1
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 1.8e-110 404.8 223 87.9
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 1.1e-107 395.6 279 69.9
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 3.0e-105 387.5 859 32.2
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 7.9e-98 362.8 253 72.7
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 7.4e-96 356.3 253 68.4
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 7.4e-96 356.3 253 68.4
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 1.1e-88 332.4 365 45.5
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 3.2e-83 314.3 286 59.8
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 8.0e-58 229.9 147 72.1
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 5.4e-54 217.2 174 54.6
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 5.9e-53 213.8 242 52.5
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 1.1e-51 209.5 149 65.1
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 1.1e-51 209.5 149 65.1
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 8.9e-49 199.9 139 66.9
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 5.4e-46 190.7 118 75.4
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 3.9e-44 184.5 169 56.8
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 8.0e-42 176.8 141 57.4
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 5.2e-41 174.1 103 82.5
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 7.5e-40 170.2 99 80.8
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 2.4e-38 165.2 113 73.5
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 4.3e-35 154.5 133 63.2
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.8e-33 149.1 76 88.2
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 5.2e-33 147.5 76 86.8
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 1.5e-32 146.0 88 81.8
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 5.8e-32 144.1 75 88.0
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 9.8e-32 143.3 76 85.5
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 1.3e-31 142.9 118 63.6
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 3.2e-30 138.3 687 22.3
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.1e-30 137.9 78 80.8
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 5.4e-30 137.5 74 85.1
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 4.6e-29 134.4 164 47.0
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 4.6e-29 134.4 114 57.0
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 1.6e-26 125.9 124 54.8
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.6e-26 125.9 65 90.8
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 1.4e-25 122.9 130 51.5
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 2.3e-25 122.1 78 78.2
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 1.3e-23 116.3 130 52.3
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 6.4e-15 87.4 82 52.4
CSS0019611 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D019539 6.0e-13 80.9 135 48.1
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 1.4e-09 69.7 56 62.5
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 4.0e-09 68.2 46 60.9
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 3.4e-08 65.1 42 69.0
HanXRQChr15g0465621 Helianthus annuus HOM05D003791 ORTHO05D019539 9.9e-08 63.5 76 48.7


User provided reference genes

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