Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 1.0e-244 849.7 452 100.0
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 1.1e-195 686.8 452 77.7
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 7.3e-195 684.1 462 77.7
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 4.0e-193 678.3 452 76.8
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 3.4e-192 675.2 452 76.8
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 1.3e-191 673.3 452 75.7
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.0e-189 666.0 452 75.2
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 2.3e-188 662.5 451 75.2
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 7.3e-187 657.5 454 76.7
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 7.3e-187 657.5 434 78.8
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.2e-186 656.8 454 76.0
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.6e-186 656.4 454 76.7
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 2.1e-186 656.0 452 75.2
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 6.2e-186 654.4 452 75.4
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 1.1e-185 653.7 458 77.3
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 3.1e-185 652.1 454 74.4
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 4.0e-185 651.7 453 74.6
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 5.2e-185 651.4 449 73.9
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 3.4e-184 648.7 452 73.5
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 5.8e-184 647.9 450 78.0
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 1.7e-183 646.4 448 73.4
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 4.9e-183 644.8 454 75.8
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 1.1e-182 643.7 452 73.7
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 6.0e-181 637.9 455 71.6
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 8.6e-180 634.0 451 71.8
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.9e-179 632.9 454 74.2
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 3.3e-179 632.1 454 74.2
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 1.6e-178 629.8 451 72.1
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 3.6e-178 628.6 470 69.4
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 3.6e-178 628.6 470 69.4
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 4.0e-177 625.2 468 70.5
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 5.2e-177 624.8 451 70.5
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 6.8e-177 624.4 451 72.9
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 5.8e-176 621.3 462 71.6
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 1.7e-175 619.8 450 72.4
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 2.9e-175 619.0 460 70.2
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 7.1e-174 614.4 447 69.8
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 7.1e-174 614.4 451 69.4
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 7.8e-173 610.9 450 69.3
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 5.1e-172 608.2 453 68.4
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 6.6e-172 607.8 455 70.5
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 1.5e-171 606.7 436 72.5
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 2.5e-171 605.9 465 69.9
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 4.3e-171 605.1 455 68.1
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 1.2e-170 603.6 453 70.0
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 4.7e-170 601.7 459 72.5
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 1.8e-169 599.7 461 67.5
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 2.4e-169 599.4 449 71.3
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 9.0e-169 597.4 450 68.7
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 2.6e-168 595.9 457 68.9
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 4.4e-168 595.1 453 66.7
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 9.3e-166 587.4 447 68.7
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 1.3e-164 583.6 444 68.0
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 2.5e-163 579.3 453 67.1
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 7.3e-163 577.8 453 66.2
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 2.1e-162 576.2 445 67.4
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 4.8e-162 575.1 442 66.3
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 6.2e-162 574.7 442 67.0
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 4.0e-161 572.0 442 67.0
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 1.5e-160 570.1 439 68.1
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 2.0e-160 569.7 454 67.2
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 4.5e-160 568.5 442 66.3
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 5.8e-160 568.2 442 65.2
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 5.8e-160 568.2 454 67.4
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 1.3e-159 567.0 442 66.1
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 8.4e-159 564.3 442 66.3
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 1.1e-158 563.9 452 66.6
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 1.4e-158 563.5 442 66.5
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 4.2e-158 562.0 455 66.2
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 5.4e-158 561.6 442 67.4
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 7.1e-158 561.2 408 70.8
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 7.1e-158 561.2 510 61.4
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 4.6e-157 558.5 446 65.0
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 6.0e-157 558.1 443 67.3
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 7.9e-157 557.8 442 67.2
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 3.9e-156 555.4 456 65.8
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 8.7e-156 554.3 452 67.3
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 4.3e-155 552.0 459 64.3
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 4.3e-155 552.0 447 64.7
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 6.2e-154 548.1 462 63.6
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 2.1e-149 533.1 542 55.9
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 3.9e-148 528.9 410 69.5
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 5.1e-148 528.5 451 61.9
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 1.9e-147 526.6 448 65.2
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 2.4e-145 519.6 467 60.8
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 5.8e-144 515.0 471 59.4
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 2.5e-142 509.6 471 59.4
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 1.0e-140 504.2 416 66.1
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 8.7e-140 501.1 443 62.5
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 1.8e-137 493.4 466 58.4
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 9.0e-137 491.1 460 58.9
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 2.6e-136 489.6 450 58.0
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 1.4e-132 477.2 437 59.7
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 1.8e-132 476.9 363 69.7
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 6.7e-132 474.9 435 60.2
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 7.4e-131 471.5 454 61.7
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 4.8e-130 468.8 270 84.8
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 1.8e-129 466.8 465 55.9
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 1.7e-127 460.3 268 85.4
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 6.1e-125 451.8 363 64.7
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 1.3e-122 444.1 253 87.0
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 1.8e-116 423.7 437 51.9
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 6.7e-116 421.8 253 79.4
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 4.4e-115 419.1 340 64.1
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 3.7e-114 416.0 432 54.2
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 2.4e-113 413.3 409 53.5
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 1.7e-106 390.6 228 82.9
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 9.1e-105 384.8 441 52.4
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.1e-102 377.9 321 67.6
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 7.5e-99 365.2 325 66.2
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 1.6e-96 357.5 427 49.2
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 4.2e-94 349.4 483 43.5
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 1.6e-93 347.4 287 65.5
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 1.5e-91 340.9 372 52.2
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 2.1e-77 293.9 297 60.3
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 9.2e-73 278.5 260 56.2
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 7.8e-72 275.4 286 54.2
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 1.0e-71 275.0 283 56.2
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 6.0e-64 249.2 247 55.9
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 6.8e-60 235.7 210 60.5
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 2.9e-58 230.3 222 58.1
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 1.9e-57 227.6 408 39.5
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 3.2e-57 226.9 440 36.4
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 4.4e-51 206.5 260 45.4
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 3.2e-49 200.3 138 65.9
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 1.9e-46 191.0 211 53.6
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 2.5e-46 190.7 252 42.9
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 4.9e-42 176.4 159 57.9
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 6.4e-42 176.0 106 80.2
Glyma.15G221000 Glycine max HOM05D005149 ORTHO05D006251 4.2e-41 173.3 98 86.7
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 2.7e-40 170.6 86 89.5
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 9.0e-36 155.6 91 80.2
VMungo1127G1160 Vigna mungo HOM05D005149 ORTHO05D000001 7.1e-33 146.0 74 91.9
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 2.8e-29 134.0 86 75.6
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 1.2e-27 128.6 86 65.1
Cfa024879 Carpinus fangiana HOM05D005149 ORTHO05D006251 5.8e-27 126.3 252 31.3
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 1.8e-20 104.8 66 74.2
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 3.1e-20 104.0 188 38.3
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 3.8e-18 97.1 69 73.9
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 7.2e-17 92.8 92 53.3
MBI14_g16397_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 1.1e-14 85.5 61 65.6
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.5e-14 85.1 188 34.0
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 4.3e-14 83.6 84 58.3
Rhsim04G0076600 Rhododendron simsii HOM05D000030 ORTHO05D000009 2.8e-13 80.9 59 67.8
Gorai.004G275700 Gossypium raimondii HOM05D005149 ORTHO05D006251 4.7e-08 63.5 59 61.0
TWI15G0704 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 1.0e-07 62.4 44 68.2
arahy.Tifrunner.gnm1.ann1.638LQB Arachis hypogaea HOM05D000561 ORTHO05D000514 6.7e-07 59.7 36 77.8
BcaB01g02418 Brassica carinata HOM05D005149 ORTHO05D006251 5.7e-06 56.6 81 40.7


User provided reference genes

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