Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 2.6e-178 628.6 325 100.0
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 7.2e-144 514.2 327 82.0
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 2.1e-143 512.7 328 81.7
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 6.7e-142 507.7 326 82.2
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 1.1e-141 506.9 324 80.6
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 2.5e-141 505.8 326 78.5
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 3.3e-141 505.4 325 80.9
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 4.3e-141 505.0 328 79.6
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 4.3e-141 505.0 328 79.9
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 5.7e-141 504.6 328 78.7
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 5.7e-141 504.6 327 78.6
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 7.4e-141 504.2 328 78.7
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 9.7e-141 503.8 328 79.6
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 1.3e-140 503.4 326 77.9
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.3e-140 503.4 328 79.3
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 4.8e-140 501.5 328 79.9
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 4.8e-140 501.5 328 79.9
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 6.3e-140 501.1 325 78.5
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 8.2e-140 500.7 326 77.0
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 1.1e-139 500.4 323 78.6
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 5.3e-139 498.0 324 78.7
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 2.6e-138 495.7 327 76.8
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 4.5e-138 495.0 326 76.7
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 4.5e-138 495.0 325 76.3
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 5.9e-138 494.6 326 76.7
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 7.7e-138 494.2 345 75.1
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 1.3e-137 493.4 328 75.9
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 5.0e-137 491.5 332 78.3
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 5.0e-137 491.5 328 75.3
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 8.5e-137 490.7 328 75.6
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 1.4e-136 490.0 325 76.3
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 1.4e-136 490.0 329 76.3
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 1.9e-136 489.6 325 75.7
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 5.5e-136 488.0 328 75.3
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 1.6e-135 486.5 352 72.4
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 6.1e-135 484.6 331 76.1
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 5.1e-134 481.5 329 76.9
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 2.6e-133 479.2 329 73.3
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 4.4e-133 478.4 329 73.3
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 1.3e-132 476.9 330 74.5
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 2.8e-132 475.7 326 74.2
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 3.7e-132 475.3 326 73.9
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 6.3e-132 474.6 331 73.7
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 4.1e-131 471.9 293 81.9
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 5.3e-131 471.5 328 77.1
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 2.6e-130 469.2 326 73.6
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 1.7e-129 466.5 325 73.2
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 1.9e-128 463.0 327 73.7
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 2.3e-126 456.1 330 73.3
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 3.0e-126 455.7 329 71.1
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 4.0e-126 455.3 328 72.0
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 5.2e-126 454.9 325 71.4
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 5.2e-126 454.9 360 67.5
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 6.7e-126 454.5 329 74.8
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.5e-125 453.4 327 70.6
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.5e-125 453.4 325 72.0
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.5e-125 453.4 325 71.7
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 1.5e-125 453.4 397 62.7
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 3.3e-125 452.2 325 71.7
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 3.3e-125 452.2 328 71.0
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 4.4e-125 451.8 363 67.8
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 5.7e-125 451.4 328 71.6
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 1.3e-124 450.3 329 71.1
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.7e-124 449.9 325 71.4
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 2.2e-124 449.5 328 72.3
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 4.8e-124 448.4 328 72.3
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 1.1e-123 447.2 327 72.2
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 1.4e-123 446.8 330 68.8
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 1.4e-123 446.8 328 71.3
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 7.0e-123 444.5 326 71.5
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 7.0e-123 444.5 324 71.3
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 4.5e-122 441.8 330 71.5
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 3.8e-121 438.7 330 70.3
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 5.0e-121 438.3 325 71.1
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 6.5e-121 438.0 319 70.5
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 4.2e-120 435.3 330 69.7
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 9.4e-120 434.1 276 80.4
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 9.4e-120 434.1 330 70.0
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 1.2e-119 433.7 325 69.5
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 8.0e-119 431.0 327 67.9
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 1.0e-118 430.6 325 68.3
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 2.0e-117 426.4 325 67.7
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.0e-117 426.4 324 67.9
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 7.5e-117 424.5 323 70.3
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 9.8e-117 424.1 328 68.3
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 1.7e-116 423.3 324 67.9
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 2.2e-116 422.9 325 67.4
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 1.4e-115 420.2 327 67.9
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.8e-115 419.9 325 66.8
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 2.4e-115 419.5 325 66.5
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 2.4e-115 419.5 324 66.4
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 2.4e-115 419.5 325 67.1
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 5.4e-115 418.3 326 67.5
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 9.1e-115 417.5 326 66.9
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 9.1e-115 417.5 326 66.6
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 1.7e-113 413.3 326 66.9
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 2.2e-113 412.9 335 64.5
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.1e-112 410.6 316 69.6
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 9.4e-112 407.5 325 66.8
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 1.4e-110 403.7 328 65.5
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 1.5e-109 400.2 292 72.6
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 2.6e-109 399.4 325 65.2
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 1.3e-108 397.1 321 64.5
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 6.6e-105 384.8 323 63.2
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 1.1e-104 384.0 328 63.1
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 8.9e-102 374.4 321 60.1
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 4.6e-98 362.1 325 61.5
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 3.3e-96 355.9 323 61.9
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 5.6e-96 355.1 320 61.9
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 2.0e-90 336.7 321 56.7
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 5.0e-89 332.0 326 57.1
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 4.3e-88 328.9 277 66.1
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 9.5e-88 327.8 315 57.5
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 3.4e-85 319.3 176 89.8
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 4.9e-84 315.5 315 56.5
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 1.9e-83 313.5 326 56.1
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 9.2e-83 311.2 319 49.5
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 5.8e-77 292.0 319 49.2
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 8.1e-71 271.6 196 71.9
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 3.4e-69 266.2 324 50.9
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 1.4e-67 260.8 185 75.7
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 4.6e-66 255.8 283 45.2
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 2.8e-63 246.5 133 95.5
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 8.1e-63 245.0 213 60.1
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 3.2e-59 233.0 196 63.8
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 4.2e-59 232.6 141 79.4
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.7e-58 229.9 320 45.6
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 7.4e-56 221.9 304 41.4
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 9.6e-56 221.5 271 49.8
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 6.4e-52 208.8 158 69.0
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 6.4e-52 208.8 131 77.1
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 4.6e-50 202.6 182 62.6
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 7.9e-50 201.8 131 78.6
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 4.3e-48 196.1 139 66.9
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 2.0e-45 187.2 128 76.6
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 1.3e-41 174.5 264 39.8
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 5.7e-40 169.1 177 51.4
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 5.7e-40 169.1 116 75.0
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 1.6e-39 167.5 228 43.4
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 8.2e-39 165.2 139 59.0
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 1.1e-38 164.9 148 61.5
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 1.1e-38 164.9 92 82.6
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 5.9e-37 159.1 310 34.8
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 7.2e-35 152.1 153 51.0
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 2.2e-31 140.6 198 42.9
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 1.4e-30 137.9 82 76.8
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 7.7e-29 132.1 144 52.1
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 1.7e-28 131.0 141 51.1
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 2.9e-28 130.2 117 59.0
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 2.5e-27 127.1 126 46.8
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 5.5e-27 125.9 176 42.0
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.4e-25 121.3 213 37.6
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 5.1e-25 119.4 192 41.1
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 2.6e-24 117.1 68 85.3
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 6.1e-18 95.9 87 60.9
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 6.1e-18 95.9 87 60.9
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 3.3e-16 90.1 87 59.8
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 4.1e-14 83.2 59 71.2
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 6.5e-12 75.9 120 45.0
BcaC07g36966 Brassica carinata HOM05D004465 ORTHO05D005450 1.8e-09 67.8 60 61.7
A08p37370 Brassica napus HOM05D004465 ORTHO05D005450 1.5e-08 64.7 57 66.7
SalBow2G0531 Salvia bowleyana HOM05D004465 ORTHO05D351996 5.3e-06 56.2 33 75.8


User provided reference genes

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