Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 0.0e+00 2253.4 1203 100.0
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 0.0e+00 2114.7 1208 94.0
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 0.0e+00 1771.1 1212 79.9
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 0.0e+00 1755.3 1211 78.9
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 0.0e+00 1739.2 1212 78.1
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 0.0e+00 1729.5 1211 77.3
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 0.0e+00 1711.8 1211 76.9
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1710.7 1211 77.5
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 0.0e+00 1710.3 1215 75.6
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 0.0e+00 1710.3 1144 80.6
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 0.0e+00 1705.3 1211 76.9
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 0.0e+00 1698.3 1212 77.0
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1696.4 1210 76.7
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 0.0e+00 1694.1 1242 76.0
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 0.0e+00 1688.3 1211 75.6
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1688.3 1212 75.7
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 0.0e+00 1686.0 1213 76.5
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 0.0e+00 1684.1 1212 75.4
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1677.1 1210 76.4
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 0.0e+00 1676.8 1212 76.2
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1675.6 1214 74.6
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 0.0e+00 1672.5 1212 75.2
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1671.4 1212 75.2
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 0.0e+00 1671.0 1211 75.3
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 0.0e+00 1669.8 1220 75.3
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 0.0e+00 1669.4 1183 75.4
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 0.0e+00 1669.1 1153 79.4
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1666.7 1212 75.1
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 0.0e+00 1662.1 1232 74.8
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 0.0e+00 1659.4 1201 74.4
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 0.0e+00 1658.3 1220 75.1
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 0.0e+00 1644.4 1216 74.9
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1643.6 1256 73.2
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1642.1 1211 74.3
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 0.0e+00 1640.2 1268 72.9
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 0.0e+00 1639.8 1213 75.8
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 0.0e+00 1639.8 1223 73.4
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 0.0e+00 1639.4 1208 73.7
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 0.0e+00 1637.5 1208 73.4
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1635.9 1210 73.2
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 0.0e+00 1632.5 1183 76.8
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1630.9 1211 75.3
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1630.2 1191 73.6
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1630.2 1213 73.1
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 0.0e+00 1628.2 1213 74.6
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1625.9 1211 73.1
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1624.8 1213 73.1
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1624.4 1221 71.1
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 0.0e+00 1624.4 1210 74.0
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 0.0e+00 1621.7 1212 73.1
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1620.9 1211 73.5
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1620.5 1214 72.8
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1616.7 1211 74.9
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 0.0e+00 1615.1 1218 73.8
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 0.0e+00 1614.0 1226 72.3
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 0.0e+00 1609.0 1219 72.8
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1605.1 1215 73.4
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 0.0e+00 1601.6 1209 72.0
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 0.0e+00 1600.1 1215 72.6
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 0.0e+00 1585.9 1206 71.6
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 0.0e+00 1580.8 1217 71.3
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 0.0e+00 1579.3 1213 72.4
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1577.4 1216 71.9
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 0.0e+00 1563.5 1216 69.2
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 0.0e+00 1563.1 1180 71.8
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1555.4 1195 72.1
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 0.0e+00 1550.4 1185 71.7
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1548.5 1241 69.2
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1545.8 1193 70.9
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1536.5 1207 70.3
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 0.0e+00 1535.0 1406 63.6
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1534.6 1216 70.1
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1521.9 1144 72.2
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 0.0e+00 1512.3 1209 68.1
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1510.0 1219 67.3
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1510.0 1219 67.3
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1506.1 1082 75.8
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 0.0e+00 1501.5 878 91.8
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 0.0e+00 1500.7 1227 68.8
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1497.6 1222 67.5
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 0.0e+00 1497.3 1208 68.8
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1495.3 1313 66.0
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 0.0e+00 1493.0 1208 68.5
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 0.0e+00 1490.3 1210 67.9
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1489.2 1219 66.2
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 0.0e+00 1488.0 1188 70.1
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 0.0e+00 1481.1 1210 67.4
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1477.6 1210 67.4
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1474.5 1198 67.7
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1474.1 1210 67.3
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 0.0e+00 1471.1 1208 67.5
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 0.0e+00 1470.3 1202 67.4
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 0.0e+00 1469.9 1206 68.4
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1458.0 1211 68.7
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1456.0 1194 67.8
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 0.0e+00 1448.0 1193 69.9
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1417.5 1205 65.0
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 0.0e+00 1389.8 1230 63.2
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 0.0e+00 1383.6 1219 65.2
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1379.8 1267 63.1
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 0.0e+00 1352.8 938 77.6
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 0.0e+00 1352.0 1214 63.9
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 0.0e+00 1340.1 887 77.5
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 0.0e+00 1266.9 760 92.1
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 0.0e+00 1250.7 668 95.5
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 0.0e+00 1229.5 922 77.8
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 0.0e+00 1192.2 845 75.5
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1188.3 791 80.5
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 0.0e+00 1148.7 1240 53.4
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1087.0 901 70.1
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 1.7e-307 1059.7 805 69.2
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.2e-278 963.0 744 69.5
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 5.7e-271 938.3 982 57.0
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.4e-213 746.9 625 65.3
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 1.3e-211 741.1 444 87.6
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 3.2e-189 666.8 536 65.3
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 1.4e-173 614.8 960 42.2
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 8.8e-171 605.5 411 74.9
Rhsim03G0121600 Rhododendron simsii HOM05D003924 ORTHO05D005216 3.6e-156 557.0 377 75.3
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 8.0e-156 555.8 294 92.2
Nitab4.5_0000061g0410 Nicotiana tabacum HOM05D003924 ORTHO05D005216 7.0e-128 463.0 313 80.2
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 1.7e-126 458.4 1166 34.0
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 1.2e-124 452.2 309 75.4
FAN12G0118 Fragaria x ananassa HOM05D003924 ORTHO05D005216 2.4e-120 438.0 371 66.8
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 1.2e-119 435.6 237 88.6
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 1.2e-114 419.1 863 36.3
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 3.1e-99 367.9 1035 28.8
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 1.6e-95 355.5 583 41.3
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 1.9e-85 322.0 181 86.2
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 7.3e-85 320.1 181 84.5
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 7.3e-85 320.1 181 84.5
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 1.8e-83 315.5 174 87.9
SEGI_04277 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 3.1e-83 314.7 220 73.2
SEGI_05715 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.5e-82 312.4 220 72.7
Oeu055056.1 Olea europaea HOM05D003924 ORTHO05D005216 1.6e-79 302.4 223 70.4
SHI16912 Sapria himalayana HOM05D003924 ORTHO05D005216 2.4e-75 288.5 387 51.4
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 4.5e-74 284.3 345 54.5
HPP92_017238 Vanilla planifolia HOM05D003924 ORTHO05D005216 1.6e-71 275.8 366 50.5
Os02g0631500 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 3.9e-70 271.2 342 53.2
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 1.1e-64 253.1 206 64.1
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 4.1e-59 234.6 137 86.9
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.1e-56 226.5 131 87.0
SEGI_09139 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.9e-56 225.7 162 72.2
SEGI_15949 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.5e-53 215.3 153 73.2
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 9.1e-51 206.8 320 50.3
BcaC02g07419 Brassica carinata HOM05D003924 ORTHO05D005216 1.1e-48 199.9 328 39.9
Aqoxy298s005 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.0e-46 193.4 139 68.3
Cpa.g.sc1.272 Carica papaya HOM05D003924 ORTHO05D005216 1.1e-45 189.9 232 51.7
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 3.8e-41 174.9 120 68.3
Os02g0631601 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 3.6e-39 168.3 96 86.5
Aqoxy298s002 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 3.3e-37 161.8 170 60.6
Os04g0523350 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 5.9e-34 151.0 102 75.5
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 3.8e-33 148.3 83 86.7
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 1.0e-30 140.2 77 87.0
AUR62023872 Chenopodium quinoa HOM05D003924 ORTHO05D000112 1.0e-30 140.2 124 62.1
Psat7g256680 Pisum sativum HOM05D003924 ORTHO05D005216 2.3e-30 139.0 224 45.1
Oeu055057.1 Olea europaea HOM05D001574 ORTHO05D000708 5.2e-30 137.9 119 73.1
Atru.chr12.624 Acer truncatum HOM05D003924 ORTHO05D005216 2.2e-28 132.5 102 74.5
C04p28760 Brassica napus HOM05D003924 ORTHO05D020089 1.0e-25 123.6 87 71.3
Aqoxy298s004 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 2.5e-24 119.0 72 79.2
Os04g0523200 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 4.2e-24 118.2 120 60.0
MBI04_g36907_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 1.5e-21 109.8 96 66.7
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 5.7e-21 107.8 65 86.2
Lsat_1_v5_gn_0_39640 Lactuca sativa HOM05D003924 ORTHO05D005911 2.2e-20 105.9 83 57.8
TPR.G40375 Trifolium pratense HOM05D003924 ORTHO05D005216 1.4e-19 103.2 79 69.6
AL879U10010 Arabidopsis lyrata HOM05D003924 ORTHO05D000708 7.7e-18 97.4 59 86.4
C07p14600 Brassica napus HOM05D003924 ORTHO05D020089 1.3e-17 96.7 69 68.1
SHI16913 Sapria himalayana HOM05D000002 ORTHO05D000001 3.8e-17 95.1 77 63.6
BcaC02g10454 Brassica carinata HOM05D003924 ORTHO05D020089 8.6e-17 94.0 57 77.2
BolC4t24411H Brassica oleracea HOM05D003924 ORTHO05D020089 1.5e-16 93.2 57 75.4
BcaC02g07417 Brassica carinata HOM05D003924 ORTHO05D005216 1.3e-12 80.1 56 66.1
SHI16920 Sapria himalayana HOM05D003924 ORTHO05D002750 1.7e-12 79.7 46 87.0
Prupe.3G086600 Prunus persica HOM05D003924 ORTHO05D005216 5.4e-11 74.7 135 40.7
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 5.0e-09 68.2 42 73.8
Atru.chr12.623 Acer truncatum HOM05D003924 ORTHO05D051863 1.9e-08 66.2 113 40.7
BraA07t28706Z Brassica rapa HOM05D003924 ORTHO05D020089 9.5e-08 63.9 47 55.3
C07p01420 Brassica napus HOM05D000209 ORTHO05D000129 6.1e-07 61.2 150 36.0
Hma1.2p1_3877F.1_g337870 Hydrangea macrophylla HOM05D003924 ORTHO05D228195 8.0e-07 60.8 53 64.2
Lsat_1_v5_gn_8_86941 Lactuca sativa HOM05D002786 ORTHO05D003493 1.4e-06 60.1 94 43.6


User provided reference genes

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