Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G70.7 Capsicum annuum HOM05D004376 ORTHO05D005304 1.1e-157 560.1 321 100.0
CAN.G311.86 Capsicum annuum HOM05D004376 ORTHO05D005304 1.7e-97 360.1 345 60.0
Sopen04g035720 Solanum pennellii HOM05D004376 ORTHO05D005304 5.9e-74 282.0 345 49.3
PGSC0003DMG400009961 Solanum tuberosum HOM05D004376 ORTHO05D005304 2.5e-72 276.6 343 48.7
Nitab4.5_0003280g0050 Nicotiana tabacum HOM05D004376 ORTHO05D005304 4.7e-71 272.3 312 51.3
CAN.G11.23 Capsicum annuum HOM05D004376 ORTHO05D005304 2.6e-69 266.5 305 52.5
Solyc04g082070.4 Solanum lycopersicum HOM05D004376 ORTHO05D005304 6.3e-68 261.9 237 60.8
Peaxi162Scf00174g01119 Petunia axillaris HOM05D004376 ORTHO05D005304 8.3e-60 235.0 227 56.8
GSVIVG01008716001 Vitis vinifera HOM05D004376 ORTHO05D005304 1.1e-51 208.0 318 40.6
CDE02G0983 Ceratophyllum demersum HOM05D004376 ORTHO05D005304 5.4e-51 205.7 235 48.5
CiPaw.07G142200 Carya illinoinensis HOM05D004376 ORTHO05D005304 1.0e-49 201.4 336 39.0
Sed0022390 Sechium edule HOM05D004376 ORTHO05D005304 6.6e-49 198.7 353 39.1
Haze_22730 Corylus avellana HOM05D004376 ORTHO05D005304 8.6e-49 198.4 353 38.2
Potri.002G014400 Populus trichocarpa HOM05D004376 ORTHO05D005304 1.9e-48 197.2 380 35.0
Ca_21112_v3 Cicer arietinum L. HOM05D004376 ORTHO05D005304 4.3e-48 196.1 307 41.7
Thecc.10G086100 Theobroma cacao HOM05D004376 ORTHO05D005304 4.3e-48 196.1 316 39.2
Cfa014026 Carpinus fangiana HOM05D004376 ORTHO05D005304 5.6e-48 195.7 345 38.3
Cc10_g00930 Coffea canephora HOM05D004376 ORTHO05D005304 7.3e-48 195.3 313 39.6
QL02p013385 Quercus lobata HOM05D004376 ORTHO05D005304 9.5e-48 194.9 353 38.5
Sabra05G0190800 Salix brachista HOM05D004376 ORTHO05D005304 1.6e-47 194.1 350 37.1
SGA_v2.0_scaffold275G46548 Striga asiatica HOM05D004376 ORTHO05D005304 4.7e-47 192.6 318 40.9
ClCG05G015300 Citrullus lanatus HOM05D004376 ORTHO05D005304 6.2e-47 192.2 345 39.1
Potri.005G247000 Populus trichocarpa HOM05D004376 ORTHO05D005304 6.2e-47 192.2 356 36.2
CsaV3_4G037020 Cucumis sativus L. HOM05D004376 ORTHO05D005304 8.0e-47 191.8 370 37.3
Psat4g008680 Pisum sativum HOM05D004376 ORTHO05D005304 8.0e-47 191.8 359 36.8
MELO3C017001.2 Cucumis melo HOM05D004376 ORTHO05D005304 1.4e-46 191.0 345 38.6
Lj4C16G12 Lonicera japonica HOM05D004376 ORTHO05D005304 3.1e-46 189.9 357 37.8
Hund17272 Selenicereus undatus HOM05D004376 ORTHO05D005304 3.1e-46 189.9 356 36.8
FAN15G0873 Fragaria x ananassa HOM05D004376 ORTHO05D005304 5.2e-46 189.1 306 40.2
FAN27G0101 Fragaria x ananassa HOM05D004376 ORTHO05D005304 5.2e-46 189.1 305 40.0
Phvul.003G157400 Phaseolus vulgaris HOM05D004376 ORTHO05D005304 5.2e-46 189.1 362 36.2
CANSAT25G0081 Cannabis sativa HOM05D004376 ORTHO05D005304 6.8e-46 188.7 327 39.8
SalBow7G0439 Salvia bowleyana HOM05D004376 ORTHO05D005304 1.2e-45 188.0 377 35.3
DCAR_023004 Daucus carota HOM05D004376 ORTHO05D005304 2.6e-45 186.8 319 38.6
ECA238G2008 Erigeron canadensis HOM05D004376 ORTHO05D005304 4.4e-45 186.0 316 40.2
CSS0003340 Camellia sinensis var. sinensis HOM05D004376 ORTHO05D005304 7.5e-45 185.3 365 35.9
CSS0022497 Camellia sinensis var. sinensis HOM05D004376 ORTHO05D005304 7.5e-45 185.3 365 35.9
RcHm_v2.0_Chr6g0303831 Rosa chinensis HOM05D004376 ORTHO05D005304 7.5e-45 185.3 311 39.9
VMungo1215G0405 Vigna mungo HOM05D004376 ORTHO05D005304 9.8e-45 184.9 362 35.6
Lsat_1_v5_gn_2_5561 Lactuca sativa HOM05D004376 ORTHO05D005304 1.7e-44 184.1 329 37.4
SGA_v2.0_scaffold351G49653 Striga asiatica HOM05D004376 ORTHO05D005304 2.2e-44 183.7 359 36.5
Medtr4g131220 Medicago truncatula HOM05D004376 ORTHO05D005304 2.9e-44 183.3 362 35.4
Medtr4g131270 Medicago truncatula HOM05D004376 ORTHO05D005304 2.9e-44 183.3 362 35.4
TPR.G4183 Trifolium pratense HOM05D004376 ORTHO05D005304 2.9e-44 183.3 360 36.4
TWI36G0200 Tripterygium wilfordii HOM05D004376 ORTHO05D005304 3.7e-44 183.0 354 35.0
Eucgr.F01708 Eucalyptus grandis HOM05D004376 ORTHO05D005304 4.9e-44 182.6 370 35.4
Lj4g0015297 Lotus japonicus HOM05D004376 ORTHO05D005304 4.9e-44 182.6 369 35.5
PSO541G0445 Papaver somniferum HOM05D004376 ORTHO05D005304 4.9e-44 182.6 336 36.6
Glyma.02G202300 Glycine max HOM05D004376 ORTHO05D005304 1.1e-43 181.4 344 36.9
Glyma.19G018000 Glycine max HOM05D004376 ORTHO05D005304 2.4e-43 180.3 344 36.3
arahy.Tifrunner.gnm1.ann1.B15N49 Arachis hypogaea HOM05D004376 ORTHO05D005304 3.2e-43 179.9 379 33.2
Ciclev10000838m.g Citrus clementina HOM05D004376 ORTHO05D005304 3.2e-43 179.9 353 36.5
COL.COLO4_36544 Corchorus olitorius HOM05D004376 ORTHO05D005304 3.2e-43 179.9 345 35.7
Manes.18G008300 Manihot esculenta HOM05D004376 ORTHO05D005304 7.1e-43 178.7 389 33.4
PSO675G7961 Papaver somniferum HOM05D004376 ORTHO05D005304 9.2e-43 178.3 324 37.3
Prupe.1G357900 Prunus persica HOM05D004376 ORTHO05D005304 9.2e-43 178.3 368 33.7
arahy.Tifrunner.gnm1.ann1.CAQ3WI Arachis hypogaea HOM05D004376 ORTHO05D005304 4.6e-42 176.0 380 32.4
CDE06G1859 Ceratophyllum demersum HOM05D004376 ORTHO05D005304 4.6e-42 176.0 187 50.3
Nn5g30880 Nelumbo nucifera HOM05D004376 ORTHO05D005304 4.6e-42 176.0 338 37.6
MSTRG.25283 Avicennia marina HOM05D004376 ORTHO05D005304 6.0e-42 175.6 419 32.7
vmacro04385 Vaccinium macrocarpon HOM05D004376 ORTHO05D005304 6.0e-42 175.6 391 32.7
Aqoxy6G01883 Aquilegia oxysepala HOM05D004376 ORTHO05D005304 1.0e-41 174.9 361 34.3
Duzib106G0676 Durio zibethinus HOM05D004376 ORTHO05D005304 1.7e-41 174.1 348 34.5
Oeu021477.1 Olea europaea HOM05D004376 ORTHO05D005304 3.0e-41 173.3 339 36.9
AUR62014364 Chenopodium quinoa HOM05D004376 ORTHO05D005304 8.6e-41 171.8 315 37.1
CARHR069660 Cardamine hirsuta HOM05D004376 ORTHO05D005304 1.9e-40 170.6 301 37.2
SHI08024 Sapria himalayana HOM05D004376 ORTHO05D005304 2.5e-40 170.2 302 37.4
TAR628G0340 Trochodendron aralioides HOM05D004376 ORTHO05D005304 2.5e-40 170.2 375 34.4
unitig_26.g9890 Utricularia gibba HOM05D004376 ORTHO05D005304 7.3e-40 168.7 365 33.4
THA.LOC104813770 Tarenaya hassleriana HOM05D004376 ORTHO05D005304 9.5e-40 168.3 374 33.7
PGR083G0927 Punica granatum HOM05D004376 ORTHO05D005304 1.2e-39 167.9 377 33.4
Ah.05g171420 Amaranthus hybridus HOM05D004376 ORTHO05D005304 1.6e-39 167.5 357 35.3
AL2G36160 Arabidopsis lyrata HOM05D004376 ORTHO05D005304 1.6e-39 167.5 321 35.5
BcaC08g47105 Brassica carinata HOM05D004376 ORTHO05D005304 1.6e-39 167.5 281 40.6
Zm00001eb250100 Zea mays HOM05D004376 ORTHO05D005304 8.1e-39 165.2 388 32.7
BcaNung05111 Brassica carinata HOM05D004376 ORTHO05D005304 1.8e-38 164.1 276 37.3
BolC6t40045H Brassica oleracea HOM05D004376 ORTHO05D005304 1.8e-38 164.1 276 37.3
BraA07t31697Z Brassica rapa HOM05D004376 ORTHO05D005304 1.8e-38 164.1 271 39.1
Migut.C00912 Erythranthe guttata HOM05D004376 ORTHO05D005304 1.8e-38 164.1 441 30.6
AUR62019106 Chenopodium quinoa HOM05D004376 ORTHO05D005304 5.2e-38 162.5 335 36.7
AT1G76120 Arabidopsis thaliana HOM05D004376 ORTHO05D005304 6.8e-38 162.2 313 35.8
A07p41680 Brassica napus HOM05D004376 ORTHO05D005304 6.8e-38 162.2 276 37.3
BolC5t30599H Brassica oleracea HOM05D004376 ORTHO05D005304 2.6e-37 160.2 338 35.5
Sed0015523 Sechium edule HOM05D004376 ORTHO05D005304 2.6e-37 160.2 351 34.8
BcaC05g25947 Brassica carinata HOM05D004376 ORTHO05D005304 9.9e-37 158.3 335 35.8
C05p18990 Brassica napus HOM05D004376 ORTHO05D005304 9.9e-37 158.3 335 35.8
EL10Ac1g00494 Beta vulgaris HOM05D004376 ORTHO05D005304 1.3e-36 157.9 372 31.7
C06p50060 Brassica napus HOM05D004376 ORTHO05D005304 1.3e-36 157.9 271 37.6
Carub.0002s2300 Capsella rubella HOM05D004376 ORTHO05D005304 1.3e-36 157.9 316 34.8
Gohir.A06G168500 Gossypium hirsutum HOM05D004376 ORTHO05D005304 1.3e-36 157.9 403 32.0
Dinv31908 Davidia involucrata HOM05D004376 ORTHO05D005304 2.2e-36 157.1 99 72.7
Gorai.010G207100 Gossypium raimondii HOM05D004376 ORTHO05D005304 2.2e-36 157.1 403 30.8
Thhalv10018512m.g Eutrema salsugineum HOM05D004376 ORTHO05D005304 2.9e-36 156.8 315 33.7
Gohir.D06G176200 Gossypium hirsutum HOM05D004376 ORTHO05D005304 1.1e-35 154.8 403 32.0
A06p16450 Brassica napus HOM05D004376 ORTHO05D005304 1.4e-35 154.5 338 35.5
BraA06t24749Z Brassica rapa HOM05D004376 ORTHO05D005304 1.9e-35 154.1 338 35.2
Aa31LG4G6240 Aethionema arabicum HOM05D004376 ORTHO05D005304 1.2e-34 151.4 343 31.8
Lalb_Chr12g0198601 Lupinus albus HOM05D004376 ORTHO05D005304 1.2e-34 151.4 405 30.9
HPP92_021052 Vanilla planifolia HOM05D004376 ORTHO05D005304 1.2e-34 151.4 372 30.1
Sp5g31240 Schrenkiella parvula HOM05D004376 ORTHO05D005304 2.7e-34 150.2 327 34.3
AT1G20370 Arabidopsis thaliana HOM05D004376 ORTHO05D005304 1.0e-33 148.3 332 32.8
Carub.0001s1987 Capsella rubella HOM05D004376 ORTHO05D005304 1.7e-33 147.5 348 32.8
MBI05_g12852_MAGBIO Magnolia biondii HOM05D004376 ORTHO05D005304 3.0e-33 146.7 417 29.5
Cpa.g.sc26.243 Carica papaya HOM05D004376 ORTHO05D005304 3.9e-33 146.4 117 59.0
Os02g0668400 Oryza sativa ssp. japonica HOM05D004376 ORTHO05D005304 3.9e-33 146.4 404 30.7
BcaNung05112 Brassica carinata HOM05D004376 ORTHO05D005304 8.6e-33 145.2 276 35.5
Thhalv10007295m.g Eutrema salsugineum HOM05D004376 ORTHO05D005304 8.6e-33 145.2 321 33.6
HanXRQChr06g0184861 Helianthus annuus HOM05D004376 ORTHO05D005304 3.3e-32 143.3 110 63.6
Lalb_Chr07g0179761 Lupinus albus HOM05D004376 ORTHO05D005304 3.3e-32 143.3 93 71.0
Medtr4g131200 Medicago truncatula HOM05D004376 ORTHO05D005304 5.6e-32 142.5 108 63.0
AL1G33290 Arabidopsis lyrata HOM05D004376 ORTHO05D005304 7.3e-32 142.1 345 31.6
MD15G1005400 Malus domestica HOM05D004376 ORTHO05D005304 7.3e-32 142.1 82 74.4
Atru.chr13.191 Acer truncatum HOM05D004376 ORTHO05D005304 9.6e-32 141.7 90 70.0
CDE06G1209 Ceratophyllum demersum HOM05D004376 ORTHO05D005304 6.2e-31 139.0 93 66.7
Sp1g18110 Schrenkiella parvula HOM05D004376 ORTHO05D005304 6.2e-31 139.0 350 31.4
AL1G33250 Arabidopsis lyrata HOM05D004376 ORTHO05D005304 1.8e-30 137.5 316 31.6
FAN11G1577 Fragaria x ananassa HOM05D004376 ORTHO05D005304 2.4e-30 137.1 82 72.0
Aa31LG7G4710 Aethionema arabicum HOM05D004376 ORTHO05D005304 1.5e-29 134.4 90 67.8
CAN.G139.2 Capsicum annuum HOM05D004376 ORTHO05D005304 2.0e-29 134.0 82 75.6
HanXRQChr14g0428961 Helianthus annuus HOM05D004376 ORTHO05D005304 2.0e-29 134.0 82 73.2
PGR083G1997 Punica granatum HOM05D004376 ORTHO05D005304 2.0e-29 134.0 82 70.7
BcaC08g47290 Brassica carinata HOM05D004376 ORTHO05D005304 5.8e-29 132.5 255 34.1
DCAR_016746 Daucus carota HOM05D004376 ORTHO05D005304 1.3e-28 131.3 126 52.4
Actinidia29774 Actinidia chinensis HOM05D004376 ORTHO05D005304 1.7e-28 131.0 85 71.8
Glyma.17G075500 Glycine max HOM05D004376 ORTHO05D005304 2.2e-28 130.6 86 73.3
ATR0661G260 Amborella trichopoda HOM05D004376 ORTHO05D005304 3.8e-28 129.8 81 69.1
BcaB07g32040 Brassica carinata HOM05D004376 ORTHO05D005304 8.4e-28 128.6 133 51.9
CARHR020830 Cardamine hirsuta HOM05D004376 ORTHO05D005304 5.4e-27 125.9 90 62.2
Pp3c6_13480 Physcomitrium patens HOM05D004376 ORTHO05D005304 1.6e-26 124.4 204 35.8
SEGI_08421 Sequoiadendron giganteum HOM05D004376 ORTHO05D005304 7.3e-24 115.5 81 60.5
Pp3c5_14220 Physcomitrium patens HOM05D004376 ORTHO05D005304 1.7e-20 104.4 298 30.2
Actinidia37959 Actinidia chinensis HOM05D004376 ORTHO05D005304 8.4e-20 102.1 77 63.6
Mapoly0057s0025 Marchantia polymorpha HOM05D004376 ORTHO05D005304 1.4e-19 101.3 89 48.3
Oeu053188.1 Olea europaea HOM05D004376 ORTHO05D005304 3.5e-18 96.7 101 52.5
AagrBONN_evm.TU.Sc2ySwM_228.5747 Anthoceros agrestis HOM05D004376 ORTHO05D005304 1.0e-17 95.1 80 52.5
SMO270G0142 Selaginella moellendorffii HOM05D004376 ORTHO05D005304 1.0e-17 95.1 81 51.9
Ca_21111_v3 Cicer arietinum L. HOM05D003067 ORTHO05D007251 1.3e-17 94.7 132 43.9
CBR_g17013 Chara braunii HOM05D004376 ORTHO05D005304 2.3e-17 94.0 100 44.0
BcaB05g23404 Brassica carinata HOM05D004376 ORTHO05D005304 5.1e-17 92.8 66 68.2
BcaB04g17458 Brassica carinata HOM05D004376 ORTHO05D005304 8.7e-17 92.0 70 64.3
Sc19g0001720 Simmondsia chinensis HOM05D004376 ORTHO05D005304 2.5e-16 90.5 116 49.1
BcaB06g25791 Brassica carinata HOM05D004376 ORTHO05D005304 2.4e-14 84.0 63 66.7
Mapoly0001s0557 Marchantia polymorpha HOM05D004376 ORTHO05D005304 6.9e-14 82.4 80 46.2
PRCOL_00003413 Prasinoderma coloniale HOM05D004376 ORTHO05D005304 4.5e-13 79.7 81 44.4
SMO301G0050 Selaginella moellendorffii HOM05D004376 ORTHO05D005304 7.6e-13 79.0 215 27.9
BcaB03g16848 Brassica carinata HOM05D004376 ORTHO05D005304 2.9e-12 77.0 72 48.6
BcaC07g42474 Brassica carinata HOM05D004376 ORTHO05D005304 1.4e-11 74.7 75 46.7
MD15G1005300 Malus domestica HOM05D004376 ORTHO05D005304 1.0e-09 68.6 39 74.4
AT1G20290 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 2.1e-07 60.8 61 49.2
Aa31LG7G3290 Aethionema arabicum HOM05D004376 ORTHO05D005304 8.1e-07 58.9 38 71.1


User provided reference genes

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