Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 2.9e-241 838.2 441 100.0
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 9.5e-240 833.2 441 99.5
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 1.3e-236 822.8 442 98.4
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 3.6e-231 804.7 446 94.2
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 2.3e-222 775.4 447 94.2
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 3.5e-218 761.5 442 88.2
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 7.8e-218 760.4 441 87.5
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 2.5e-216 755.4 442 88.0
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 1.2e-215 753.1 442 86.7
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 1.1e-214 750.0 436 86.7
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 8.9e-214 746.9 441 86.6
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 2.6e-213 745.3 442 86.0
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 1.3e-209 733.0 444 84.2
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 1.2e-197 693.3 438 81.1
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 2.1e-162 576.2 430 69.8
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 3.9e-161 572.0 452 69.0
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 5.1e-161 571.6 452 68.4
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 8.8e-161 570.9 452 68.8
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 8.8e-161 570.9 452 68.8
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 8.8e-161 570.9 436 67.9
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 7.4e-160 567.8 452 69.2
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 1.3e-159 567.0 437 69.3
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 2.8e-159 565.8 456 68.4
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 9.1e-158 560.8 452 68.1
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 2.0e-157 559.7 442 67.2
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 7.7e-157 557.8 441 66.2
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 4.2e-155 552.0 434 66.4
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 2.1e-154 549.7 436 64.7
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 2.1e-154 549.7 437 65.2
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 3.6e-154 548.9 443 65.7
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 7.9e-154 547.7 432 65.7
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 2.3e-153 546.2 450 64.0
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 3.0e-153 545.8 431 67.1
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 6.7e-153 544.7 455 63.5
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 6.7e-153 544.7 455 63.5
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 6.7e-153 544.7 426 66.2
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 1.1e-152 543.9 436 64.9
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 4.4e-152 542.0 435 64.4
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 9.7e-152 540.8 421 67.2
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 2.2e-151 539.7 433 64.7
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 2.8e-151 539.3 430 66.5
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 6.3e-151 538.1 435 64.1
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 1.1e-150 537.3 437 63.4
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.1e-150 537.3 435 64.1
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 4.1e-150 535.4 430 66.0
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 7.0e-150 534.6 435 65.1
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 5.9e-149 531.6 436 66.5
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 5.0e-148 528.5 437 62.9
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 7.2e-147 524.6 441 64.6
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.6e-146 523.5 444 62.6
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 2.7e-146 522.7 440 63.9
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 6.1e-146 521.5 438 63.5
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 8.0e-146 521.2 435 63.2
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 1.0e-145 520.8 447 63.3
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 1.4e-145 520.4 439 64.2
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 6.7e-145 518.1 436 64.9
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 5.7e-144 515.0 435 62.5
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 7.4e-144 514.6 436 64.2
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 2.2e-143 513.1 420 64.3
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 4.8e-143 511.9 432 61.3
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 8.2e-143 511.1 438 61.2
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 1.1e-142 510.8 440 62.7
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 3.1e-142 509.2 434 62.7
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 4.1e-142 508.8 428 65.7
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 4.1e-142 508.8 441 62.1
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 4.5e-141 505.4 435 62.8
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 1.7e-140 503.4 438 63.9
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 1.7e-140 503.4 433 63.3
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 2.2e-140 503.1 438 62.1
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 1.1e-139 500.7 449 60.8
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 2.5e-139 499.6 420 65.0
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 1.2e-136 490.7 428 61.7
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 3.7e-135 485.7 438 60.3
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 1.8e-134 483.4 436 59.4
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 8.5e-132 474.6 437 58.6
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 4.2e-131 472.2 434 60.1
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 7.2e-131 471.5 440 58.2
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 1.2e-130 470.7 491 55.6
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 4.7e-130 468.8 446 58.7
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 2.3e-129 466.5 403 61.8
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 3.0e-129 466.1 531 53.1
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 1.3e-127 460.7 440 57.7
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 1.6e-125 453.8 396 64.1
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 1.6e-125 453.8 444 57.9
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 3.8e-124 449.1 417 60.2
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 6.6e-124 448.4 405 60.2
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 8.6e-124 448.0 430 58.6
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 8.6e-124 448.0 436 56.2
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 3.3e-123 446.0 405 59.5
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 8.9e-121 438.0 434 56.0
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 4.4e-120 435.6 419 59.4
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 4.9e-119 432.2 403 61.0
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 3.2e-118 429.5 429 55.0
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 2.3e-116 423.3 444 54.1
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 2.9e-116 422.9 348 66.1
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 2.2e-111 406.8 450 54.9
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 4.9e-111 405.6 268 75.0
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 2.3e-108 396.7 437 52.6
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 4.0e-105 386.0 435 48.3
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 2.6e-104 383.3 264 73.1
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 3.7e-103 379.4 346 58.7
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 6.6e-100 368.6 248 74.6
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 9.5e-99 364.8 430 48.1
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 4.7e-98 362.5 251 71.7
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 1.1e-97 361.3 323 60.7
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 8.3e-95 351.7 417 50.4
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 3.9e-92 342.8 405 48.1
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 5.1e-92 342.4 414 51.2
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 3.4e-88 329.7 310 63.9
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 3.8e-87 326.2 224 72.8
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 5.1e-84 315.8 482 40.9
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 4.0e-81 306.2 360 49.7
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 4.4e-80 302.8 269 62.1
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 8.1e-74 282.0 309 55.3
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 6.7e-68 262.3 312 51.3
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 1.1e-65 255.0 273 54.9
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 2.1e-61 240.7 168 67.9
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 1.1e-59 235.0 280 48.2
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 1.3e-58 231.5 208 60.1
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 1.3e-55 221.5 247 55.9
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 5.7e-51 206.1 210 56.7
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 3.7e-50 203.4 432 32.6
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 8.5e-47 192.2 206 52.4
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 3.2e-46 190.3 258 46.1
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 3.6e-45 186.8 393 35.9
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 2.0e-40 171.0 107 85.0
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 2.0e-40 171.0 138 60.1
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 7.7e-40 169.1 255 38.8
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 8.8e-36 155.6 86 83.7
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.3e-34 151.8 106 75.5
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 4.8e-34 149.8 142 57.7
Glyma.15G221000 Glycine max HOM05D005149 ORTHO05D006251 5.5e-30 136.3 98 71.4
VMungo1127G1160 Vigna mungo HOM05D005149 ORTHO05D000001 3.0e-28 130.6 74 82.4
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 3.3e-27 127.1 89 68.5
Cfa024879 Carpinus fangiana HOM05D005149 ORTHO05D006251 7.7e-24 115.9 256 32.0
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 1.3e-23 115.2 86 61.6
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 9.4e-22 109.0 69 85.5
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 2.1e-21 107.8 86 64.0
BcaB01g02418 Brassica carinata HOM05D005149 ORTHO05D006251 3.1e-17 94.0 103 56.3
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 5.9e-16 89.7 81 64.2
BolC3t17347H Brassica oleracea HOM05D004811 ORTHO05D017514 5.0e-15 86.7 54 85.2
BolC4t27414H Brassica oleracea HOM05D004811 ORTHO05D017514 8.5e-15 85.9 55 83.6
BcaC02g08049 Brassica carinata HOM05D004811 ORTHO05D017514 1.1e-14 85.5 53 84.9
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.5e-14 85.1 189 34.4
C03p50580 Brassica napus HOM05D004811 ORTHO05D017514 1.9e-14 84.7 53 84.9
BolC9t58149H Brassica oleracea HOM05D004811 ORTHO05D017514 1.9e-14 84.7 54 83.3
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 2.5e-14 84.3 67 64.2
BcaC04g19678 Brassica carinata HOM05D004811 ORTHO05D017514 7.2e-14 82.8 53 83.0
C09p52830 Brassica napus HOM05D004811 ORTHO05D017514 7.2e-14 82.8 53 83.0
C04p59020 Brassica napus HOM05D004811 ORTHO05D017514 9.4e-14 82.4 53 83.0
Rhsim04G0076600 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.4e-12 78.6 59 61.0
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.5e-11 75.1 189 31.7
MBI14_g16397_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 1.2e-08 65.5 51 58.8
Gorai.004G275700 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.5e-06 58.5 62 51.6


User provided reference genes

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