Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p66150 Brassica napus HOM05D000280 ORTHO05D027926 8.8e-41 169.9 86 100.0
BolC9t59435H Brassica oleracea HOM05D000280 ORTHO05D027926 1.3e-28 129.4 64 98.4
BcaB01g05514 Brassica carinata HOM05D000280 ORTHO05D006100 1.3e-23 112.8 68 83.8
BcaC03g13321 Brassica carinata HOM05D000280 ORTHO05D006100 3.1e-22 108.2 59 93.2
C02p04560 Brassica napus HOM05D000280 ORTHO05D006100 3.1e-22 108.2 59 93.2
BolC2t06416H Brassica oleracea HOM05D000280 ORTHO05D006100 3.1e-22 108.2 59 93.2
A02p00570 Brassica napus HOM05D000280 ORTHO05D006100 7.0e-22 107.1 59 91.5
BraA02t05040Z Brassica rapa HOM05D000280 ORTHO05D006100 7.0e-22 107.1 59 91.5
AT5G10630 Arabidopsis thaliana HOM05D000280 ORTHO05D006100 9.1e-22 106.7 59 91.5
BcaB01g06268 Brassica carinata HOM05D000280 ORTHO05D006100 1.2e-21 106.3 59 89.8
BcaB05g21493 Brassica carinata HOM05D000280 ORTHO05D006100 2.7e-21 105.1 59 89.8
C03p05380 Brassica napus HOM05D000280 ORTHO05D006100 2.7e-21 105.1 59 89.8
Carub.0006s0912 Capsella rubella HOM05D000280 ORTHO05D006100 2.7e-21 105.1 59 88.1
Sp6g32810 Schrenkiella parvula HOM05D000280 ORTHO05D006100 2.7e-21 105.1 59 89.8
BcaB01g05511 Brassica carinata HOM05D000280 ORTHO05D006100 3.5e-21 104.8 59 88.1
A03p04670 Brassica napus HOM05D000280 ORTHO05D006100 3.5e-21 104.8 59 88.1
BolC3t13051H Brassica oleracea HOM05D000280 ORTHO05D006100 3.5e-21 104.8 59 88.1
BraA03t09807Z Brassica rapa HOM05D000280 ORTHO05D006100 3.5e-21 104.8 59 88.1
Thhalv10012906m.g Eutrema salsugineum HOM05D000280 ORTHO05D006100 5.0e-20 100.9 57 87.7
CARHR202670 Cardamine hirsuta HOM05D000280 ORTHO05D006100 1.1e-19 99.8 57 84.2
THA.LOC104803321 Tarenaya hassleriana HOM05D000280 ORTHO05D006100 1.1e-19 99.8 57 87.7
Aa31LG3G16360 Aethionema arabicum HOM05D000280 ORTHO05D006100 4.2e-19 97.8 59 81.4
A10p26950 Brassica napus HOM05D000280 ORTHO05D027926 2.7e-18 95.1 60 78.3
BraA10t44746Z Brassica rapa HOM05D000280 ORTHO05D027926 2.7e-18 95.1 60 78.3
THA.LOC104814967 Tarenaya hassleriana HOM05D000280 ORTHO05D006100 3.6e-18 94.7 55 87.3
Ciclev10007529m.g Citrus clementina HOM05D000280 ORTHO05D006100 6.8e-17 90.5 57 77.2
Sed0016088 Sechium edule HOM05D000280 ORTHO05D006100 1.7e-15 85.9 55 72.7
Atru.chr7.2629 Acer truncatum HOM05D000280 ORTHO05D006100 2.8e-15 85.1 56 73.2
Cpa.g.sc23.2 Carica papaya HOM05D000280 ORTHO05D006100 2.8e-15 85.1 56 75.0
MELO3C003637.2 Cucumis melo HOM05D000280 ORTHO05D006100 2.8e-15 85.1 76 60.5
PSO675G6860 Papaver somniferum HOM05D000280 ORTHO05D006100 3.7e-15 84.7 56 71.4
PSO732G0431 Papaver somniferum HOM05D000280 ORTHO05D006100 3.7e-15 84.7 56 71.4
Cfa013259 Carpinus fangiana HOM05D003405 ORTHO05D006100 4.8e-15 84.3 56 71.4
CsaV3_3G046990 Cucumis sativus L. HOM05D000280 ORTHO05D006100 4.8e-15 84.3 76 59.2
Lj4A878G36 Lonicera japonica HOM05D000280 ORTHO05D006100 4.8e-15 84.3 55 76.4
Sed0003669 Sechium edule HOM05D000280 ORTHO05D006100 4.8e-15 84.3 55 72.7
QL12p024915 Quercus lobata HOM05D000280 ORTHO05D006100 6.3e-15 84.0 57 68.4
arahy.Tifrunner.gnm1.ann1.SPY8PK Arachis hypogaea HOM05D000280 ORTHO05D006100 1.1e-14 83.2 74 60.8
arahy.Tifrunner.gnm1.ann1.Z3E7QY Arachis hypogaea HOM05D000280 ORTHO05D006100 1.1e-14 83.2 74 60.8
CiPaw.07G213900 Carya illinoinensis HOM05D000280 ORTHO05D006100 1.1e-14 83.2 58 67.2
ClCG05G017490 Citrullus lanatus HOM05D000280 ORTHO05D006100 1.1e-14 83.2 73 60.3
Migut.D02069 Erythranthe guttata HOM05D000280 ORTHO05D006100 1.4e-14 82.8 58 67.2
Gohir.A05G065100 Gossypium hirsutum HOM05D000280 ORTHO05D006100 1.4e-14 82.8 74 55.4
Lj4g0007463 Lotus japonicus HOM05D000280 ORTHO05D006100 1.4e-14 82.8 74 60.8
Dinv17597 Davidia involucrata HOM05D000280 ORTHO05D006100 1.8e-14 82.4 58 70.7
MD15G1109000 Malus domestica HOM05D000280 ORTHO05D006100 1.8e-14 82.4 74 59.5
HanXRQChr12g0371811 Helianthus annuus HOM05D000280 ORTHO05D006100 2.4e-14 82.0 55 76.4
EL10Ac2g03735 Beta vulgaris HOM05D000280 ORTHO05D006100 4.1e-14 81.3 57 63.2
Nn7g38182 Nelumbo nucifera HOM05D000280 ORTHO05D006100 4.1e-14 81.3 56 69.6
CiPaw.08G018800 Carya illinoinensis HOM05D000280 ORTHO05D006100 7.0e-14 80.5 56 66.1
Haze_21719 Corylus avellana HOM05D000280 ORTHO05D006100 7.0e-14 80.5 56 66.1
Duzib168G0370 Durio zibethinus HOM05D000280 ORTHO05D006100 7.0e-14 80.5 73 56.2
Lsat_1_v5_gn_8_154301 Lactuca sativa HOM05D000280 ORTHO05D006100 7.0e-14 80.5 55 72.7
BcaB01g06266 Brassica carinata HOM05D000280 ORTHO05D006100 9.1e-14 80.1 49 81.6
MD08G1131300 Malus domestica HOM05D000280 ORTHO05D006100 9.1e-14 80.1 74 58.1
Prupe.1G461200 Prunus persica HOM05D000280 ORTHO05D006100 9.1e-14 80.1 74 58.1
Sc23g0005160 Simmondsia chinensis HOM05D000280 ORTHO05D006100 9.1e-14 80.1 57 64.9
SGA_v2.0_scaffold74G24572 Striga asiatica HOM05D000280 ORTHO05D006100 9.1e-14 80.1 55 70.9
Actinidia14148 Actinidia chinensis HOM05D000280 ORTHO05D006100 1.2e-13 79.7 56 69.6
Rhsim07G0169700 Rhododendron simsii HOM05D000280 ORTHO05D006100 1.2e-13 79.7 56 67.9
SalBow8G3273 Salvia bowleyana HOM05D000280 ORTHO05D006100 1.2e-13 79.7 56 66.1
AUR62009047 Chenopodium quinoa HOM05D000280 ORTHO05D006100 1.6e-13 79.3 57 63.2
COL.COLO4_19045 Corchorus olitorius HOM05D000280 ORTHO05D006100 1.6e-13 79.3 59 62.7
Gorai.009G068500 Gossypium raimondii HOM05D000280 ORTHO05D006100 1.6e-13 79.3 74 52.7
Hund19401 Selenicereus undatus HOM05D000280 ORTHO05D006100 1.6e-13 79.3 57 68.4
TAR622G1315 Trochodendron aralioides HOM05D000280 ORTHO05D006100 1.6e-13 79.3 59 67.8
vmacro05110 Vaccinium macrocarpon HOM05D000280 ORTHO05D006100 1.6e-13 79.3 56 66.1
Gohir.A06G106400 Gossypium hirsutum HOM05D000280 ORTHO05D006100 2.0e-13 79.0 77 53.2
Psat7g066640 Pisum sativum HOM05D000280 ORTHO05D006100 2.0e-13 79.0 74 58.1
Potri.006G275500 Populus trichocarpa HOM05D000280 ORTHO05D006100 2.0e-13 79.0 57 64.9
CANSAT11G2600 Cannabis sativa HOM05D000280 ORTHO05D006100 2.7e-13 78.6 56 67.9
Cc04_g07010 Coffea canephora HOM05D000280 ORTHO05D006100 2.7e-13 78.6 57 61.4
DCAR_002123 Daucus carota HOM05D000280 ORTHO05D006100 2.7e-13 78.6 56 66.1
Gohir.D05G067700 Gossypium hirsutum HOM05D000280 ORTHO05D006100 2.7e-13 78.6 74 52.7
TPR.G6781 Trifolium pratense HOM05D000280 ORTHO05D006100 2.7e-13 78.6 56 67.9
Ah.11g043740 Amaranthus hybridus HOM05D000280 ORTHO05D006100 3.5e-13 78.2 57 64.9
CSS0007869 Camellia sinensis var. sinensis HOM05D000280 ORTHO05D006100 3.5e-13 78.2 57 66.7
Gorai.010G123300 Gossypium raimondii HOM05D000280 ORTHO05D006100 3.5e-13 78.2 74 55.4
MBI06_g17218_MAGBIO Magnolia biondii HOM05D000280 ORTHO05D006100 3.5e-13 78.2 59 61.0
Thecc.09G006100 Theobroma cacao HOM05D000280 ORTHO05D006100 3.5e-13 78.2 73 54.8
unitig_21.g20433 Utricularia gibba HOM05D000280 ORTHO05D006100 3.5e-13 78.2 75 54.7
Ca_17873_v3 Cicer arietinum L. HOM05D000280 ORTHO05D006100 4.5e-13 77.8 74 56.8
Gohir.D06G108600 Gossypium hirsutum HOM05D000280 ORTHO05D006100 4.5e-13 77.8 74 55.4
Sabra06G0213300 Salix brachista HOM05D000280 ORTHO05D008407 4.5e-13 77.8 57 64.9
Oeu017963.1 Olea europaea HOM05D000280 ORTHO05D006100 5.9e-13 77.4 59 64.4
Hma1.2p1_0751F.1_g212700 Hydrangea macrophylla HOM05D000280 ORTHO05D006100 7.7e-13 77.0 57 66.7
Lalb_Chr12g0204821 Lupinus albus HOM05D000280 ORTHO05D006100 7.7e-13 77.0 56 67.9
VMungo0251G0391 Vigna mungo HOM05D000280 ORTHO05D006100 7.7e-13 77.0 57 66.7
Glyma.05G163800 Glycine max HOM05D000280 ORTHO05D006100 1.0e-12 76.6 56 67.9
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 1.0e-12 76.6 57 59.6
TWI32G0853 Tripterygium wilfordii HOM05D000280 ORTHO05D006100 1.0e-12 76.6 56 66.1
Medtr8g087950 Medicago truncatula HOM05D000280 ORTHO05D006100 1.3e-12 76.3 74 55.4
TWI34G1405 Tripterygium wilfordii HOM05D000280 ORTHO05D006100 1.3e-12 76.3 56 66.1
GSVIVG01015660001 Vitis vinifera HOM05D000280 ORTHO05D006100 1.3e-12 76.3 57 63.2
Aqoxy6G02767 Aquilegia oxysepala HOM05D000280 ORTHO05D006100 2.3e-12 75.5 55 65.5
Nitab4.5_0001536g0070 Nicotiana tabacum HOM05D000280 ORTHO05D006100 2.3e-12 75.5 58 62.1
ECA233G5364 Erigeron canadensis HOM05D000280 ORTHO05D006100 2.9e-12 75.1 55 70.9
Glyma.08G121100 Glycine max HOM05D000280 ORTHO05D006100 2.9e-12 75.1 56 66.1
Nitab4.5_0023239g0010 Nicotiana tabacum HOM05D000280 ORTHO05D006100 2.9e-12 75.1 55 69.1
Oeu052532.1 Olea europaea HOM05D000280 ORTHO05D006100 2.9e-12 75.1 56 64.3
Peaxi162Scf00634g00037 Petunia axillaris HOM05D000280 ORTHO05D006100 2.9e-12 75.1 56 64.3
Peaxi162Scf00683g00036 Petunia axillaris HOM05D000280 ORTHO05D006100 2.9e-12 75.1 56 66.1
RcHm_v2.0_Chr6g0304851 Rosa chinensis HOM05D000280 ORTHO05D006100 5.0e-12 74.3 56 64.3
Aqoxy7G02538 Aquilegia oxysepala HOM05D000280 ORTHO05D006100 6.6e-12 73.9 55 63.6
MSTRG.4317 Avicennia marina HOM05D000280 ORTHO05D006100 6.6e-12 73.9 57 63.2
Eucgr.C04004 Eucalyptus grandis HOM05D000280 ORTHO05D006100 6.6e-12 73.9 56 60.7
Nitab4.5_0000208g0390 Nicotiana tabacum HOM05D000280 ORTHO05D006100 6.6e-12 73.9 58 60.3
Phvul.002G243900 Phaseolus vulgaris HOM05D000280 ORTHO05D006100 6.6e-12 73.9 75 56.0
CAN.G1425.23 Capsicum annuum HOM05D000280 ORTHO05D006100 8.6e-12 73.6 55 65.5
PGR044G0314 Punica granatum HOM05D000280 ORTHO05D006100 8.6e-12 73.6 59 61.0
PGSC0003DMG400005728 Solanum tuberosum HOM05D000280 ORTHO05D006100 8.6e-12 73.6 55 65.5
FvH4_2g36930 Fragaria vesca HOM05D000280 ORTHO05D006100 1.5e-11 72.8 56 64.3
FAN15G1693 Fragaria x ananassa HOM05D000280 ORTHO05D008407 1.5e-11 72.8 56 64.3
FAN27G1572 Fragaria x ananassa HOM05D000280 ORTHO05D008407 1.5e-11 72.8 56 64.3
Sopen12g016940 Solanum pennellii HOM05D000280 ORTHO05D006100 1.5e-11 72.8 56 60.7
Sopen03g038170 Solanum pennellii HOM05D000280 ORTHO05D006100 1.9e-11 72.4 55 63.6
AUR62020615 Chenopodium quinoa HOM05D000280 ORTHO05D006100 2.5e-11 72.0 62 58.1
FAN15G1052 Fragaria x ananassa HOM05D000280 ORTHO05D006100 2.5e-11 72.0 56 60.7
RcHm_v2.0_Chr6g0302681 Rosa chinensis HOM05D000280 ORTHO05D006100 3.3e-11 71.6 56 62.5
Manes.03G003000 Manihot esculenta HOM05D000280 ORTHO05D006100 4.2e-11 71.2 57 57.9
Solyc03g119290.3 Solanum lycopersicum HOM05D000280 ORTHO05D006100 4.2e-11 71.2 55 61.8
CDE03G0365 Ceratophyllum demersum HOM05D000280 ORTHO05D006100 5.5e-11 70.9 74 48.6
FvH4_2g38640 Fragaria vesca HOM05D000280 ORTHO05D006100 5.5e-11 70.9 56 58.9
FAN20G0398 Fragaria x ananassa HOM05D000280 ORTHO05D008407 5.5e-11 70.9 59 61.0
FAN20G1379 Fragaria x ananassa HOM05D000280 ORTHO05D006100 1.2e-10 69.7 56 58.9
Zm00001eb066140 Zea mays HOM05D000280 ORTHO05D006100 1.2e-10 69.7 76 50.0
ATR0665G368 Amborella trichopoda HOM05D000280 ORTHO05D006100 2.1e-10 68.9 48 60.4
Os01g0116600 Oryza sativa ssp. japonica HOM05D000280 ORTHO05D006100 2.8e-10 68.6 55 58.2
Os04g0677800 Oryza sativa ssp. japonica HOM05D000280 ORTHO05D006100 3.6e-10 68.2 61 52.5
HPP92_020873 Vanilla planifolia HOM05D000280 ORTHO05D006100 3.6e-10 68.2 54 64.8
HPP92_028114 Vanilla planifolia HOM05D000280 ORTHO05D006100 1.0e-09 66.6 54 63.0
Zm00001eb430090 Zea mays HOM05D000280 ORTHO05D006100 1.0e-09 66.6 55 56.4
SMO351G0182 Selaginella moellendorffii HOM05D000280 ORTHO05D006100 1.8e-09 65.9 55 54.5
SEGI_04248 Sequoiadendron giganteum HOM05D000280 ORTHO05D006100 2.3e-09 65.5 56 53.6
SEGI_34072 Sequoiadendron giganteum HOM05D000280 ORTHO05D006100 2.3e-09 65.5 59 49.2
Mapoly0066s0056 Marchantia polymorpha HOM05D000280 ORTHO05D006100 4.0e-09 64.7 55 49.1
CBR_g11026 Chara braunii HOM05D000280 ORTHO05D006100 2.6e-08 62.0 55 49.1
Pp3c5_28870 Physcomitrium patens HOM05D000280 ORTHO05D006100 8.3e-07 57.0 59 47.5
AagrBONN_evm.TU.Sc2ySwM_369.168 Anthoceros agrestis HOM05D000280 ORTHO05D006100 1.8e-06 55.8 80 42.5
Cre13.g565750 Chlamydomonas reinhardtii HOM05D000280 ORTHO05D006100 2.4e-06 55.5 56 46.4
Haze_26875 Corylus avellana HOM05D000280 ORTHO05D006100 7.0e-06 53.9 63 39.7


User provided reference genes

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