Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p62660 Brassica napus HOM05D002168 ORTHO05D002277 1.0e-42 176.4 93 100.0
BolC9t59104H Brassica oleracea HOM05D002168 ORTHO05D002277 1.0e-42 176.4 93 100.0
A10p24050 Brassica napus HOM05D002168 ORTHO05D002277 8.6e-18 93.6 72 75.0
C09p62520 Brassica napus HOM05D002168 ORTHO05D002277 8.6e-18 93.6 72 75.0
BraA10t44468Z Brassica rapa HOM05D002168 ORTHO05D002277 8.6e-18 93.6 72 75.0
Sp6g29450 Schrenkiella parvula HOM05D002168 ORTHO05D002277 1.5e-17 92.8 82 67.1
BolC9t59092H Brassica oleracea HOM05D002168 ORTHO05D002277 2.5e-17 92.0 72 73.6
BcaB01g05104 Brassica carinata HOM05D002168 ORTHO05D002277 3.3e-17 91.7 70 75.7
C03p07710 Brassica napus HOM05D002168 ORTHO05D002277 4.3e-17 91.3 72 73.6
BolC3t13271H Brassica oleracea HOM05D002168 ORTHO05D002277 4.3e-17 91.3 72 73.6
Thhalv10012572m.g Eutrema salsugineum HOM05D002168 ORTHO05D002277 4.3e-17 91.3 82 67.1
A03p06680 Brassica napus HOM05D002168 ORTHO05D002277 1.2e-16 89.7 72 72.2
BraA03t10002Z Brassica rapa HOM05D002168 ORTHO05D002277 1.2e-16 89.7 72 72.2
Carub.0006s1275 Capsella rubella HOM05D002168 ORTHO05D002277 1.2e-16 89.7 82 64.6
AL6G25340 Arabidopsis lyrata HOM05D002168 ORTHO05D002277 2.1e-16 89.0 82 63.4
Aa31LG11G15340 Aethionema arabicum HOM05D001485 ORTHO05D002277 3.6e-16 88.2 82 64.6
CARHR198740 Cardamine hirsuta HOM05D002168 ORTHO05D002277 4.7e-16 87.8 82 63.4
Solyc02g086600.3 Solanum lycopersicum HOM05D002168 ORTHO05D002277 1.1e-15 86.7 82 62.2
Sopen02g031360 Solanum pennellii HOM05D002168 ORTHO05D002277 1.1e-15 86.7 82 62.2
PGSC0003DMG400000516 Solanum tuberosum HOM05D002168 ORTHO05D002277 1.1e-15 86.7 82 62.2
AT5G14580 Arabidopsis thaliana HOM05D002168 ORTHO05D002277 1.4e-15 86.3 82 62.2
Ca_04173_v3 Cicer arietinum L. HOM05D002168 ORTHO05D002277 1.8e-15 85.9 82 63.4
Nitab4.5_0011492g0010 Nicotiana tabacum HOM05D002168 ORTHO05D002277 2.4e-15 85.5 82 61.0
Cfa007400 Carpinus fangiana HOM05D002168 ORTHO05D002277 4.0e-15 84.7 82 61.0
Haze_14705 Corylus avellana HOM05D002168 ORTHO05D002277 4.0e-15 84.7 82 61.0
CAN.G206.5 Capsicum annuum HOM05D002168 ORTHO05D002277 5.2e-15 84.3 82 61.0
Lalb_Chr06g0175871 Lupinus albus HOM05D002168 ORTHO05D002277 5.2e-15 84.3 82 61.0
Nitab4.5_0002739g0020 Nicotiana tabacum HOM05D002168 ORTHO05D002277 5.2e-15 84.3 82 59.8
CiPaw.03G041400 Carya illinoinensis HOM05D002168 ORTHO05D002277 1.2e-14 83.2 82 59.8
Eucgr.J02224 Eucalyptus grandis HOM05D002168 ORTHO05D002277 1.2e-14 83.2 82 59.8
Medtr6g005460 Medicago truncatula HOM05D002168 ORTHO05D002277 1.2e-14 83.2 82 61.0
Phvul.004G011100 Phaseolus vulgaris HOM05D002168 ORTHO05D002277 1.2e-14 83.2 82 59.8
arahy.Tifrunner.gnm1.ann1.P30KPE Arachis hypogaea HOM05D002168 ORTHO05D002277 1.5e-14 82.8 82 57.3
Ciclev10014159m.g Citrus clementina HOM05D002168 ORTHO05D002277 1.5e-14 82.8 82 59.8
MELO3C009975.2 Cucumis melo HOM05D002168 ORTHO05D002277 1.5e-14 82.8 82 61.0
Atru.chr6.2348 Acer truncatum HOM05D002168 ORTHO05D002277 2.0e-14 82.4 82 58.5
Lj2g0027560 Lotus japonicus HOM05D002168 ORTHO05D002277 2.0e-14 82.4 82 59.8
Peaxi162Scf00129g01334 Petunia axillaris HOM05D002168 ORTHO05D002277 2.0e-14 82.4 82 59.8
Thecc.04G014200 Theobroma cacao HOM05D002168 ORTHO05D002277 2.0e-14 82.4 82 58.5
CsaV3_3G042650 Cucumis sativus L. HOM05D002168 ORTHO05D002277 2.6e-14 82.0 82 59.8
Lj7C738T14 Lonicera japonica HOM05D002168 ORTHO05D002277 2.6e-14 82.0 82 58.5
Psat1g190960 Pisum sativum HOM05D002168 ORTHO05D002277 2.6e-14 82.0 62 74.2
arahy.Tifrunner.gnm1.ann1.SUJ4K6 Arachis hypogaea HOM05D002168 ORTHO05D002277 3.4e-14 81.6 82 56.1
PGR083G0169 Punica granatum HOM05D002168 ORTHO05D002277 3.4e-14 81.6 82 59.8
vmacro18267 Vaccinium macrocarpon HOM05D002168 ORTHO05D002277 3.4e-14 81.6 82 59.8
Glyma.19G005800 Glycine max HOM05D002168 ORTHO05D002277 4.4e-14 81.3 82 58.5
MD17G1031200 Malus domestica HOM05D002168 ORTHO05D002277 4.4e-14 81.3 82 58.5
Rhsim08G0052300 Rhododendron simsii HOM05D002168 ORTHO05D002277 4.4e-14 81.3 82 59.8
Gohir.D09G027600 Gossypium hirsutum HOM05D002168 ORTHO05D002277 5.8e-14 80.9 82 59.8
PGSC0003DMG400006644 Solanum tuberosum HOM05D002168 ORTHO05D002277 5.8e-14 80.9 72 65.3
TWI56G0079 Tripterygium wilfordii HOM05D002168 ORTHO05D002277 5.8e-14 80.9 82 58.5
Manes.15G166700 Manihot esculenta HOM05D002168 ORTHO05D002277 7.6e-14 80.5 72 63.9
ClCG10G014020 Citrullus lanatus HOM05D002168 ORTHO05D002277 9.9e-14 80.1 82 58.5
Dinv33468 Davidia involucrata HOM05D002168 ORTHO05D002277 9.9e-14 80.1 82 58.5
FAN14G2665 Fragaria x ananassa HOM05D002168 ORTHO05D002277 9.9e-14 80.1 82 58.5
CSS0007819 Camellia sinensis var. sinensis HOM05D002168 ORTHO05D002277 1.3e-13 79.7 82 57.3
CSS0018850 Camellia sinensis var. sinensis HOM05D002168 ORTHO05D002277 1.3e-13 79.7 82 57.3
Gohir.A09G028200 Gossypium hirsutum HOM05D002168 ORTHO05D002277 1.3e-13 79.7 82 59.8
Oeu054614.1 Olea europaea HOM05D002168 ORTHO05D002277 1.7e-13 79.3 82 57.3
Sc16g0003290 Simmondsia chinensis HOM05D002168 ORTHO05D002277 1.7e-13 79.3 72 62.5
MSTRG.24029 Avicennia marina HOM05D002168 ORTHO05D002277 2.2e-13 79.0 82 59.8
Cpa.g.sc108.35 Carica papaya HOM05D002168 ORTHO05D002277 2.2e-13 79.0 82 56.1
Cc07_g01920 Coffea canephora HOM05D002168 ORTHO05D002277 2.2e-13 79.0 82 56.1
DCAR_021710 Daucus carota HOM05D002168 ORTHO05D002277 2.2e-13 79.0 82 57.3
Prupe.3G288400 Prunus persica HOM05D002168 ORTHO05D002277 2.2e-13 79.0 82 58.5
SGA_v2.0_scaffold135G34895 Striga asiatica HOM05D002168 ORTHO05D002277 2.2e-13 79.0 82 58.5
QL02p075394 Quercus lobata HOM05D002168 ORTHO05D002277 2.9e-13 78.6 82 56.1
FvH4_6g51050 Fragaria vesca HOM05D002168 ORTHO05D002277 3.8e-13 78.2 82 57.3
FAN02G2577 Fragaria x ananassa HOM05D002168 ORTHO05D002277 3.8e-13 78.2 82 57.3
FAN09G4671 Fragaria x ananassa HOM05D002168 ORTHO05D002277 3.8e-13 78.2 82 57.3
Gorai.006G032100 Gossypium raimondii HOM05D002168 ORTHO05D002277 3.8e-13 78.2 82 58.5
MBI16_g05474_MAGBIO Magnolia biondii HOM05D002168 ORTHO05D002277 3.8e-13 78.2 82 57.3
TWI12G0035 Tripterygium wilfordii HOM05D002168 ORTHO05D002277 3.8e-13 78.2 82 56.1
TAR629G1390 Trochodendron aralioides HOM05D002168 ORTHO05D002277 3.8e-13 78.2 82 56.1
RcHm_v2.0_Chr2g0172601 Rosa chinensis HOM05D002168 ORTHO05D002277 4.9e-13 77.8 82 56.1
Sed0013184 Sechium edule HOM05D002168 ORTHO05D002277 6.4e-13 77.4 82 56.1
Duzib147G1710 Durio zibethinus HOM05D002168 ORTHO05D002277 8.4e-13 77.0 84 56.0
Hma1.2p1_0858F.1_g229210 Hydrangea macrophylla HOM05D002168 ORTHO05D002277 8.4e-13 77.0 82 53.7
Sabra16G0227400 Salix brachista HOM05D002168 ORTHO05D002277 8.4e-13 77.0 82 56.1
Actinidia35760 Actinidia chinensis HOM05D002168 ORTHO05D002277 1.1e-12 76.6 82 56.1
CDE05G1403 Ceratophyllum demersum HOM05D002168 ORTHO05D002277 1.1e-12 76.6 72 63.9
VMungo0464G1155 Vigna mungo HOM05D002168 ORTHO05D002277 1.1e-12 76.6 82 56.1
COL.COLO4_29057 Corchorus olitorius HOM05D002168 ORTHO05D002277 1.4e-12 76.3 82 54.9
Oeu039243.2 Olea europaea HOM05D002168 ORTHO05D002277 1.9e-12 75.9 82 56.1
PSO063G7027 Papaver somniferum HOM05D002168 ORTHO05D002277 1.9e-12 75.9 82 54.9
PSO832G0633 Papaver somniferum HOM05D002168 ORTHO05D002277 1.9e-12 75.9 82 54.9
Ah.09g232220 Amaranthus hybridus HOM05D002168 ORTHO05D002277 2.4e-12 75.5 82 54.9
ECA246G5031 Erigeron canadensis HOM05D000575 ORTHO05D002277 2.4e-12 75.5 82 51.2
EL10Ac8g19521 Beta vulgaris HOM05D002168 ORTHO05D002277 3.2e-12 75.1 82 53.7
TPR.G8718 Trifolium pratense HOM05D002168 ORTHO05D002277 3.2e-12 75.1 82 56.1
CANSAT64G2333 Cannabis sativa HOM05D002168 ORTHO05D002277 4.2e-12 74.7 82 56.1
Migut.H00092 Erythranthe guttata HOM05D002168 ORTHO05D002277 4.2e-12 74.7 82 56.1
Potri.001G347900 Populus trichocarpa HOM05D002168 ORTHO05D002277 4.2e-12 74.7 82 54.9
HanXRQChr17g0548341 Helianthus annuus HOM05D002168 ORTHO05D002277 5.4e-12 74.3 82 51.2
Lsat_1_v5_gn_0_19560 Lactuca sativa HOM05D002168 ORTHO05D002277 5.4e-12 74.3 82 53.7
GSVIVG01032436001 Vitis vinifera HOM05D002168 ORTHO05D002277 7.1e-12 73.9 72 59.7
CDE05G1018 Ceratophyllum demersum HOM05D002168 ORTHO05D002277 1.6e-11 72.8 72 61.1
Nn4g22702 Nelumbo nucifera HOM05D002168 ORTHO05D002277 1.6e-11 72.8 82 53.7
Aqoxy3G02862 Aquilegia oxysepala HOM05D002168 ORTHO05D002277 2.1e-11 72.4 82 54.9
HPP92_011646 Vanilla planifolia HOM05D002168 ORTHO05D002277 4.6e-11 71.2 72 55.6
AUR62041598 Chenopodium quinoa HOM05D002168 ORTHO05D002277 7.8e-11 70.5 70 57.1
SHI24542 Sapria himalayana HOM05D002168 ORTHO05D002277 7.8e-11 70.5 82 52.4
PSO675G8743 Papaver somniferum HOM05D002168 ORTHO05D002277 2.5e-09 65.5 63 57.1
SalBow1G8403 Salvia bowleyana HOM05D002168 ORTHO05D002277 3.3e-09 65.1 82 50.0
PSO135G0797 Papaver somniferum HOM05D002168 ORTHO05D002277 3.6e-08 61.6 63 57.1
Zm00001eb247190 Zea mays HOM05D002168 ORTHO05D002277 6.2e-08 60.8 59 55.9
PSO135G0917 Papaver somniferum HOM05D002168 ORTHO05D002277 2.4e-07 58.9 63 55.6
PSO585G0024 Papaver somniferum HOM05D002168 ORTHO05D002277 5.3e-07 57.8 63 55.6
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 5.3e-07 57.8 68 54.4


User provided reference genes

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