Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p21680 Brassica napus HOM05D003409 ORTHO05D004015 4.4e-118 427.9 214 100.0
BolC2t10305H Brassica oleracea HOM05D003409 ORTHO05D004015 6.4e-109 397.5 214 93.9
BcaC07g37821 Brassica carinata HOM05D003409 ORTHO05D004015 1.5e-105 386.3 232 87.1
BcaC03g15509 Brassica carinata HOM05D003409 ORTHO05D004015 8.1e-104 380.6 231 85.3
A02p19390 Brassica napus HOM05D003409 ORTHO05D004015 2.9e-101 372.1 231 84.0
BolC8t48208H Brassica oleracea HOM05D003409 ORTHO05D004015 4.3e-97 358.2 217 86.2
BcaC07g39178 Brassica carinata HOM05D003409 ORTHO05D004015 1.6e-83 313.2 230 74.3
A09p23650 Brassica napus HOM05D003409 ORTHO05D004015 9.1e-71 270.8 189 78.3
C03p85060 Brassica napus HOM05D003409 ORTHO05D004015 3.0e-66 255.8 214 67.8
BolC2t07681H Brassica oleracea HOM05D003409 ORTHO05D004015 6.7e-66 254.6 192 74.5
Sp6g17770 Schrenkiella parvula HOM05D003409 ORTHO05D004015 5.7e-65 251.5 195 71.8
BcaC04g20188 Brassica carinata HOM05D003409 ORTHO05D004015 1.4e-63 246.9 189 72.5
C09p46870 Brassica napus HOM05D003409 ORTHO05D004015 1.4e-63 246.9 189 72.5
BolC9t57537H Brassica oleracea HOM05D003409 ORTHO05D004015 1.4e-63 246.9 189 72.5
BraA10t43407Z Brassica rapa HOM05D003409 ORTHO05D004015 3.1e-63 245.7 189 72.0
A10p13110 Brassica napus HOM05D003409 ORTHO05D004015 4.1e-63 245.4 189 71.4
BcaB08g35958 Brassica carinata HOM05D003409 ORTHO05D004015 2.7e-62 242.7 189 70.4
BcaB05g22238 Brassica carinata HOM05D003409 ORTHO05D004015 1.7e-61 240.0 195 69.2
C02p15740 Brassica napus HOM05D003409 ORTHO05D004015 7.2e-60 234.6 168 77.4
A02p09450 Brassica napus HOM05D003409 ORTHO05D004015 3.6e-59 232.3 168 76.8
BraA02t06009Z Brassica rapa HOM05D003409 ORTHO05D004015 3.6e-59 232.3 168 76.8
Thhalv10012859m.g Eutrema salsugineum HOM05D003409 ORTHO05D004015 1.5e-57 226.9 178 70.8
Carub.0008s1625 Capsella rubella HOM05D003409 ORTHO05D004015 2.6e-57 226.1 187 67.4
Sp7g24560 Schrenkiella parvula HOM05D003409 ORTHO05D004015 1.7e-53 213.4 188 63.8
BcaC09g50636 Brassica carinata HOM05D003409 ORTHO05D004015 2.9e-53 212.6 189 64.0
AT5G55920 Arabidopsis thaliana HOM05D003409 ORTHO05D004015 5.0e-53 211.8 192 63.5
Thhalv10024758m.g Eutrema salsugineum HOM05D003409 ORTHO05D004015 1.9e-52 209.9 172 68.0
A01p17840 Brassica napus HOM05D003409 ORTHO05D004015 2.5e-52 209.5 172 67.4
BcaNung02400 Brassica carinata HOM05D003409 ORTHO05D004015 3.2e-52 209.1 189 63.0
AL8G31480 Arabidopsis lyrata HOM05D003409 ORTHO05D004015 4.2e-52 208.8 175 66.9
C01p22640 Brassica napus HOM05D003409 ORTHO05D004015 9.4e-52 207.6 172 67.4
BolC1t02194H Brassica oleracea HOM05D003409 ORTHO05D004015 9.4e-52 207.6 172 67.4
BraA01t01740Z Brassica rapa HOM05D003409 ORTHO05D004015 1.2e-51 207.2 172 66.9
CARHR269290 Cardamine hirsuta HOM05D003409 ORTHO05D004015 2.1e-51 206.5 153 72.5
THA.LOC104817712 Tarenaya hassleriana HOM05D003409 ORTHO05D004015 3.6e-51 205.7 165 69.1
Aa31LG5G11970 Aethionema arabicum HOM05D003409 ORTHO05D004015 4.7e-51 205.3 188 61.7
Carub.0007s1427 Capsella rubella HOM05D003409 ORTHO05D004015 4.7e-51 205.3 188 62.2
CARHR234180 Cardamine hirsuta HOM05D003409 ORTHO05D004015 1.4e-50 203.8 184 62.5
Aa31LG3G11830 Aethionema arabicum HOM05D003409 ORTHO05D004015 8.8e-50 201.1 186 62.4
AL7G26290 Arabidopsis lyrata HOM05D003409 ORTHO05D004015 4.4e-49 198.7 190 61.6
Lj1A892G90 Lonicera japonica HOM05D003409 ORTHO05D004015 1.7e-48 196.8 194 59.8
Dinv10352 Davidia involucrata HOM05D003409 ORTHO05D004015 2.2e-48 196.4 189 61.4
GSVIVG01014717001 Vitis vinifera HOM05D003409 ORTHO05D004015 6.3e-48 194.9 165 66.1
AT4G26600 Arabidopsis thaliana HOM05D003409 ORTHO05D004015 8.3e-48 194.5 190 60.0
Nn4g24629 Nelumbo nucifera HOM05D003409 ORTHO05D004015 8.3e-48 194.5 189 60.3
Lj6g0020357 Lotus japonicus HOM05D003409 ORTHO05D004015 1.4e-47 193.7 185 60.5
PGR083G1781 Punica granatum HOM05D003409 ORTHO05D004015 3.1e-47 192.6 189 57.1
Cfa016917 Carpinus fangiana HOM05D003409 ORTHO05D004015 4.1e-47 192.2 189 57.7
Eucgr.C03787 Eucalyptus grandis HOM05D003409 ORTHO05D004015 7.0e-47 191.4 189 58.2
QL08p003492 Quercus lobata HOM05D003409 ORTHO05D004015 7.0e-47 191.4 189 57.1
Ciclev10007740m.g Citrus clementina HOM05D003409 ORTHO05D004015 9.2e-47 191.0 189 57.1
ATR0751G119 Amborella trichopoda HOM05D003409 ORTHO05D004015 1.2e-46 190.7 165 65.5
CANSAT11G2129 Cannabis sativa HOM05D003409 ORTHO05D004015 1.6e-46 190.3 189 57.1
Hund01871 Selenicereus undatus HOM05D003409 ORTHO05D004015 1.6e-46 190.3 153 67.3
Cpa.g.sc12.127 Carica papaya HOM05D003409 ORTHO05D004015 2.7e-46 189.5 165 64.8
Prupe.8G036800 Prunus persica HOM05D003409 ORTHO05D004015 3.5e-46 189.1 165 63.6
Atru.chr2.3736 Acer truncatum HOM05D003409 ORTHO05D004015 5.9e-46 188.3 168 63.7
Atru.chr2.3741 Acer truncatum HOM05D003409 ORTHO05D004015 5.9e-46 188.3 168 63.7
Actinidia35412 Actinidia chinensis HOM05D003409 ORTHO05D004015 7.7e-46 188.0 165 66.1
SGA_v2.0_scaffold1G00379 Striga asiatica HOM05D003409 ORTHO05D004015 7.7e-46 188.0 189 58.2
SalBow5G1153 Salvia bowleyana HOM05D003409 ORTHO05D004015 1.0e-45 187.6 189 58.7
ClCG09G021450 Citrullus lanatus HOM05D003409 ORTHO05D004015 1.3e-45 187.2 189 57.7
Hma1.2p1_1804F.1_g303050 Hydrangea macrophylla HOM05D003409 ORTHO05D004015 1.3e-45 187.2 165 64.8
Hma1.2p1_1804F.1_g303060 Hydrangea macrophylla HOM05D003409 ORTHO05D004015 1.3e-45 187.2 165 64.8
Haze_09846 Corylus avellana HOM05D003409 ORTHO05D004015 1.7e-45 186.8 164 62.2
Nitab4.5_0002789g0050 Nicotiana tabacum HOM05D003409 ORTHO05D004015 1.7e-45 186.8 189 58.2
Peaxi162Scf00057g02234 Petunia axillaris HOM05D003409 ORTHO05D004015 1.7e-45 186.8 190 56.8
Hund01870 Selenicereus undatus HOM05D003409 ORTHO05D004015 1.7e-45 186.8 153 66.0
Sopen07g025740 Solanum pennellii HOM05D003409 ORTHO05D004015 1.7e-45 186.8 189 58.2
arahy.Tifrunner.gnm1.ann1.K9VFVK Arachis hypogaea HOM05D003409 ORTHO05D004015 2.3e-45 186.4 178 60.1
Medtr3g460700 Medicago truncatula HOM05D003409 ORTHO05D004015 2.3e-45 186.4 193 57.0
Oeu039418.1 Olea europaea HOM05D003409 ORTHO05D004015 2.3e-45 186.4 182 61.0
arahy.Tifrunner.gnm1.ann1.PKXG4Q Arachis hypogaea HOM05D003409 ORTHO05D004015 2.9e-45 186.0 178 60.1
CiPaw.11G205600 Carya illinoinensis HOM05D003409 ORTHO05D004015 2.9e-45 186.0 178 59.0
Solyc07g052110.4 Solanum lycopersicum HOM05D003409 ORTHO05D004015 2.9e-45 186.0 189 57.7
SGA_v2.0_scaffold42G15966 Striga asiatica HOM05D003409 ORTHO05D004015 2.9e-45 186.0 189 57.7
MD04G1044800 Malus domestica HOM05D003409 ORTHO05D004015 3.8e-45 185.7 189 57.7
HanXRQChr11g0342791 Helianthus annuus HOM05D003409 ORTHO05D004015 5.0e-45 185.3 189 57.7
Sc03g0011610 Simmondsia chinensis HOM05D003409 ORTHO05D004015 5.0e-45 185.3 171 63.7
CSS0010821 Camellia sinensis var. sinensis HOM05D003409 ORTHO05D004015 6.6e-45 184.9 165 64.2
CsaV3_7G011550 Cucumis sativus L. HOM05D003409 ORTHO05D004015 6.6e-45 184.9 189 56.1
Lsat_1_v5_gn_2_49000 Lactuca sativa HOM05D003409 ORTHO05D004015 6.6e-45 184.9 172 61.0
RcHm_v2.0_Chr4g0408681 Rosa chinensis HOM05D003409 ORTHO05D004015 6.6e-45 184.9 189 56.6
Sed0016663 Sechium edule HOM05D003409 ORTHO05D004015 6.6e-45 184.9 189 56.6
MELO3C024955.2 Cucumis melo HOM05D003409 ORTHO05D004015 8.6e-45 184.5 189 56.1
Glyma.18G075000 Glycine max HOM05D003409 ORTHO05D004015 1.1e-44 184.1 188 56.9
Manes.11G044000 Manihot esculenta HOM05D003409 ORTHO05D004015 1.1e-44 184.1 189 56.1
PGSC0003DMG400022346 Solanum tuberosum HOM05D003409 ORTHO05D004015 1.1e-44 184.1 165 63.0
CAN.G424.40 Capsicum annuum HOM05D003409 ORTHO05D004015 1.5e-44 183.7 165 63.6
Solyc02g079415.1 Solanum lycopersicum HOM05D003409 ORTHO05D004015 1.5e-44 183.7 165 63.0
Sopen02g024220 Solanum pennellii HOM05D003409 ORTHO05D004015 1.5e-44 183.7 165 63.0
VMungo0540G1920 Vigna mungo HOM05D003409 ORTHO05D004015 1.5e-44 183.7 153 65.4
Oeu005478.2 Olea europaea HOM05D003409 ORTHO05D004015 2.5e-44 183.0 165 64.2
PSO210G5345 Papaver somniferum HOM05D003409 ORTHO05D004015 2.5e-44 183.0 153 66.7
AUR62017142 Chenopodium quinoa HOM05D003409 ORTHO05D004015 3.3e-44 182.6 186 55.4
AUR62035665 Chenopodium quinoa HOM05D003409 ORTHO05D004015 3.3e-44 182.6 186 55.4
ECA248G0890 Erigeron canadensis HOM05D003409 ORTHO05D004015 3.3e-44 182.6 188 56.4
FAN22G0308 Fragaria x ananassa HOM05D003409 ORTHO05D004015 3.3e-44 182.6 182 57.7
Glyma.08G332000 Glycine max HOM05D003409 ORTHO05D004015 3.3e-44 182.6 153 64.7
PSO210G2179 Papaver somniferum HOM05D003409 ORTHO05D004015 3.3e-44 182.6 153 66.7
Rhsim06G0084600 Rhododendron simsii HOM05D003409 ORTHO05D004015 3.3e-44 182.6 152 66.4
TPR.G17957 Trifolium pratense HOM05D003409 ORTHO05D004015 3.3e-44 182.6 169 61.5
DCAR_017070 Daucus carota HOM05D003409 ORTHO05D004015 4.3e-44 182.2 165 62.4
Rhsim10G0056000 Rhododendron simsii HOM05D003409 ORTHO05D004015 4.3e-44 182.2 152 66.4
FAN07G2833 Fragaria x ananassa HOM05D003409 ORTHO05D004015 7.3e-44 181.4 182 57.7
Psat5g165320 Pisum sativum HOM05D003409 ORTHO05D004015 7.3e-44 181.4 165 61.8
Cc04_g00350 Coffea canephora HOM05D003409 ORTHO05D004015 9.5e-44 181.0 154 64.9
FvH4_4g11570 Fragaria vesca HOM05D003409 ORTHO05D004015 9.5e-44 181.0 182 57.7
FAN12G1033 Fragaria x ananassa HOM05D003409 ORTHO05D004015 9.5e-44 181.0 182 57.7
FAN12G3679 Fragaria x ananassa HOM05D003409 ORTHO05D004015 9.5e-44 181.0 182 57.7
FAN17G0359 Fragaria x ananassa HOM05D003409 ORTHO05D004015 9.5e-44 181.0 154 64.9
FAN17G1343 Fragaria x ananassa HOM05D003409 ORTHO05D004015 9.5e-44 181.0 154 64.9
Aqoxy1G01862 Aquilegia oxysepala HOM05D003409 ORTHO05D004015 2.8e-43 179.5 154 64.9
FAN04G1394 Fragaria x ananassa HOM05D003409 ORTHO05D004015 2.8e-43 179.5 182 57.1
PSO478G4279 Papaver somniferum HOM05D003409 ORTHO05D004015 2.8e-43 179.5 165 63.6
HPP92_010888 Vanilla planifolia HOM05D003409 ORTHO05D004015 2.8e-43 179.5 189 54.0
HPP92_010890 Vanilla planifolia HOM05D003409 ORTHO05D004015 2.8e-43 179.5 189 54.0
Lalb_Chr15g0082251 Lupinus albus HOM05D003409 ORTHO05D004015 3.6e-43 179.1 165 60.0
Phvul.006G059200 Phaseolus vulgaris HOM05D003409 ORTHO05D004015 6.1e-43 178.3 152 63.8
unitig_578.g16234 Utricularia gibba HOM05D003409 ORTHO05D004015 8.0e-43 177.9 185 57.3
vmacro11609 Vaccinium macrocarpon HOM05D003409 ORTHO05D004015 1.0e-42 177.6 153 64.7
Ca_12445_v3 Cicer arietinum L. HOM05D003409 ORTHO05D004015 1.4e-42 177.2 173 57.8
Lalb_Chr20g0114091 Lupinus albus HOM05D003409 ORTHO05D004015 1.8e-42 176.8 152 62.5
Sabra16G0242500 Salix brachista HOM05D003409 ORTHO05D004015 1.8e-42 176.8 172 59.3
vmacro15782 Vaccinium macrocarpon HOM05D003409 ORTHO05D004015 1.8e-42 176.8 192 56.2
Migut.H01746 Erythranthe guttata HOM05D003409 ORTHO05D004015 3.0e-42 176.0 165 60.6
Potri.001G369600 Populus trichocarpa HOM05D003409 ORTHO05D004015 4.0e-42 175.6 172 58.7
Pp3c1_15210 Physcomitrium patens HOM05D003409 ORTHO05D004015 6.8e-42 174.9 189 50.3
TWI39G0812 Tripterygium wilfordii HOM05D003409 ORTHO05D004015 1.5e-41 173.7 165 59.4
Eucgr.F02036 Eucalyptus grandis HOM05D003409 ORTHO05D004015 2.0e-41 173.3 189 55.0
TWI38G2383 Tripterygium wilfordii HOM05D003409 ORTHO05D004015 2.6e-41 172.9 165 59.4
COL.COLO4_07725 Corchorus olitorius HOM05D003409 ORTHO05D004015 3.4e-41 172.6 189 54.0
AagrBONN_evm.TU.Sc2ySwM_117.3404 Anthoceros agrestis HOM05D003409 ORTHO05D004015 4.4e-41 172.2 201 52.2
Duzib213G0349 Durio zibethinus HOM05D003409 ORTHO05D004015 7.5e-41 171.4 165 60.0
EL10Ac4g07529 Beta vulgaris HOM05D003409 ORTHO05D004015 1.7e-40 170.2 197 53.3
Thecc.07G009800 Theobroma cacao HOM05D003409 ORTHO05D004015 2.9e-40 169.5 165 59.4
Gohir.D13G135000 Gossypium hirsutum HOM05D003409 ORTHO05D004015 1.1e-39 167.5 189 52.9
Gohir.A01G093200 Gossypium hirsutum HOM05D003409 ORTHO05D004015 1.8e-39 166.8 165 58.2
Gohir.A13G131500 Gossypium hirsutum HOM05D003409 ORTHO05D004015 2.4e-39 166.4 165 58.2
Gorai.002G102200 Gossypium raimondii HOM05D003409 ORTHO05D004015 5.4e-39 165.2 165 57.6
Actinidia37139 Actinidia chinensis HOM05D003409 ORTHO05D004015 7.0e-39 164.9 130 67.7
Gorai.013G151300 Gossypium raimondii HOM05D003409 ORTHO05D004015 7.0e-39 164.9 165 57.6
SMO367G0604 Selaginella moellendorffii HOM05D003409 ORTHO05D004015 9.2e-39 164.5 190 49.5
SEGI_08867 Sequoiadendron giganteum HOM05D003409 ORTHO05D004015 2.0e-38 163.3 152 58.6
Gohir.D01G077700 Gossypium hirsutum HOM05D003409 ORTHO05D004015 2.7e-38 162.9 165 57.0
Zm00001eb253180 Zea mays HOM05D003409 ORTHO05D004015 4.6e-38 162.2 189 50.8
Nitab4.5_0000160g0180 Nicotiana tabacum HOM05D003409 ORTHO05D004015 7.8e-38 161.4 202 51.5
Lsat_1_v5_gn_1_7960 Lactuca sativa HOM05D003409 ORTHO05D004015 2.3e-37 159.8 172 56.4
Mapoly0034s0108 Marchantia polymorpha HOM05D003409 ORTHO05D004015 8.6e-37 157.9 188 47.9
Os09g0551300 Oryza sativa ssp. japonica HOM05D003409 ORTHO05D004015 8.6e-37 157.9 189 49.7
Zm00001eb189070 Zea mays HOM05D003409 ORTHO05D004015 1.1e-36 157.5 189 49.7
Os02g0724600 Oryza sativa ssp. japonica HOM05D003409 ORTHO05D004015 3.3e-36 156.0 189 49.2
Dinv40878 Davidia involucrata HOM05D003409 ORTHO05D004015 4.3e-36 155.6 177 53.1
C02p15590 Brassica napus HOM05D003409 ORTHO05D004015 1.0e-34 151.0 172 53.5
CDE07G1104 Ceratophyllum demersum HOM05D003409 ORTHO05D004015 2.3e-34 149.8 165 57.0
CBR_g8798 Chara braunii HOM05D003409 ORTHO05D004015 7.5e-33 144.8 184 46.7
MBI14_g18948_MAGBIO Magnolia biondii HOM05D003409 ORTHO05D004015 5.4e-31 138.7 152 54.6
PRCOL_00002474 Prasinoderma coloniale HOM05D003409 ORTHO05D004015 7.0e-31 138.3 152 46.1
MCO14G316 Micromonas commoda HOM05D003409 ORTHO05D004015 2.0e-30 136.7 142 52.1
Cre06.g273413 Chlamydomonas reinhardtii HOM05D003409 ORTHO05D004015 1.5e-25 120.6 191 39.8
CiPaw.12G139700 Carya illinoinensis HOM05D003409 ORTHO05D004015 6.4e-24 115.2 76 72.4
Cfa025549 Carpinus fangiana HOM05D003409 ORTHO05D004015 6.0e-22 108.6 193 39.9
TAR383G0304 Trochodendron aralioides HOM05D003409 ORTHO05D004015 2.8e-19 99.8 188 40.4
CAN.G1245.14 Capsicum annuum HOM05D003487 ORTHO05D000140 3.5e-14 82.8 51 78.4
CSS0004269 Camellia sinensis var. sinensis HOM05D003409 ORTHO05D004015 4.6e-14 82.4 71 63.4
CAN.G618.4 Capsicum annuum HOM05D003409 ORTHO05D004015 1.4e-10 70.9 49 71.4
Ah.01g014980 Amaranthus hybridus HOM05D003409 ORTHO05D004015 5.2e-10 68.9 106 44.3
SEGI_06120 Sequoiadendron giganteum HOM05D003409 ORTHO05D004015 5.2e-10 68.9 71 52.1
C03p75670 Brassica napus HOM05D003409 ORTHO05D023923 2.9e-08 63.2 87 44.8
MD00G1066100 Malus domestica HOM05D003409 ORTHO05D004015 3.8e-08 62.8 119 37.0
C09p31870 Brassica napus HOM05D000263 ORTHO05D040446 4.6e-06 55.8 48 58.3


User provided reference genes

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