Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p07830 Brassica napus HOM05D005498 ORTHO05D006719 6.1e-161 570.9 306 100.0
A06p06430 Brassica napus HOM05D005498 ORTHO05D006719 2.9e-155 552.0 307 97.4
BolC5t29534H Brassica oleracea HOM05D005498 ORTHO05D006719 1.2e-135 486.9 264 100.0
BraA06t23854Z Brassica rapa HOM05D005498 ORTHO05D006719 7.5e-135 484.2 264 99.2
Thhalv10008494m.g Eutrema salsugineum HOM05D005498 ORTHO05D006719 1.0e-120 437.2 254 89.4
A09p65320 Brassica napus HOM05D005498 ORTHO05D006719 2.0e-116 422.9 261 89.3
Sp1g08350 Schrenkiella parvula HOM05D005498 ORTHO05D006719 3.5e-116 422.2 253 88.1
C08p49270 Brassica napus HOM05D005498 ORTHO05D006719 6.0e-116 421.4 264 88.6
C08p13170 Brassica napus HOM05D005498 ORTHO05D006719 1.0e-115 420.6 262 85.5
BolC8t48946H Brassica oleracea HOM05D005498 ORTHO05D006719 1.0e-115 420.6 262 85.5
BraA09t41876Z Brassica rapa HOM05D005498 ORTHO05D006719 1.5e-114 416.8 238 95.0
BraA08t35348Z Brassica rapa HOM05D005498 ORTHO05D006719 1.9e-114 416.4 259 85.7
A08p34360 Brassica napus HOM05D005498 ORTHO05D006719 5.6e-114 414.8 259 85.7
BolC8t52462H Brassica oleracea HOM05D005498 ORTHO05D006719 2.8e-113 412.5 238 94.1
BcaC07g41860 Brassica carinata HOM05D005498 ORTHO05D006719 3.1e-112 409.1 238 93.7
AL1G20310 Arabidopsis lyrata HOM05D005498 ORTHO05D006719 6.8e-112 407.9 251 85.7
CARHR009720 Cardamine hirsuta HOM05D005498 ORTHO05D006719 4.4e-111 405.2 238 88.2
Carub.0001s0910 Capsella rubella HOM05D005498 ORTHO05D006719 1.7e-107 393.3 255 81.6
AT1G09760 Arabidopsis thaliana HOM05D005498 ORTHO05D006719 6.6e-107 391.3 251 82.9
Aa31LG1G5230 Aethionema arabicum HOM05D005498 ORTHO05D006719 3.3e-106 389.0 262 80.9
THA.LOC104820204 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 8.1e-105 384.4 261 78.9
THA.LOC104823693 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 2.5e-98 362.8 261 75.1
Prupe.1G210100 Prunus persica HOM05D005498 ORTHO05D006719 9.5e-98 360.9 243 82.3
Thecc.01G236700 Theobroma cacao HOM05D005498 ORTHO05D006719 1.6e-97 360.1 259 76.1
Eucgr.J01697 Eucalyptus grandis HOM05D005498 ORTHO05D006719 1.1e-96 357.5 245 79.6
PGR119G1930 Punica granatum HOM05D005498 ORTHO05D006719 1.1e-96 357.5 269 73.2
Manes.08G098200 Manihot esculenta HOM05D005498 ORTHO05D006719 2.4e-96 356.3 267 75.3
TWI75G0967 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 2.4e-96 356.3 242 77.7
TWI36G1055 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 6.8e-96 354.8 242 77.3
Duzib264G0012 Durio zibethinus HOM05D005498 ORTHO05D006719 1.5e-95 353.6 242 76.9
TWI75G1441 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 2.0e-95 353.2 242 76.9
CiPaw.05G096800 Carya illinoinensis HOM05D005498 ORTHO05D006719 4.4e-95 352.1 265 72.8
Ciclev10028992m.g Citrus clementina HOM05D005498 ORTHO05D006719 5.8e-95 351.7 243 78.6
Gorai.011G122500 Gossypium raimondii HOM05D005498 ORTHO05D006719 7.6e-95 351.3 242 76.9
Gohir.A10G154800 Gossypium hirsutum HOM05D005498 ORTHO05D006719 9.9e-95 350.9 242 76.9
Gohir.D10G111100 Gossypium hirsutum HOM05D005498 ORTHO05D006719 9.9e-95 350.9 242 76.9
MD13G1135200 Malus domestica HOM05D005498 ORTHO05D006719 3.8e-94 349.0 271 73.1
Lalb_Chr21g0307771 Lupinus albus HOM05D005498 ORTHO05D006719 4.9e-94 348.6 256 75.0
MD16G1130900 Malus domestica HOM05D005498 ORTHO05D006719 8.4e-94 347.8 271 72.7
FAN07G2790 Fragaria x ananassa HOM05D005498 ORTHO05D006719 1.1e-93 347.4 252 77.8
EL10Ac2g02403 Beta vulgaris HOM05D005498 ORTHO05D006719 1.4e-93 347.1 267 70.8
Cc04_g05550 Coffea canephora HOM05D005498 ORTHO05D006719 1.4e-93 347.1 244 76.6
FvH4_4g21991 Fragaria vesca HOM05D005498 ORTHO05D006719 1.9e-93 346.7 240 80.4
Glyma.10G123200 Glycine max HOM05D005498 ORTHO05D006719 1.9e-93 346.7 266 70.3
RcHm_v2.0_Chr4g0428191 Rosa chinensis HOM05D005498 ORTHO05D006719 1.9e-93 346.7 240 80.4
Ca_04134_v3 Cicer arietinum L. HOM05D005498 ORTHO05D006719 3.2e-93 345.9 239 80.3
Sed0026884 Sechium edule HOM05D005498 ORTHO05D006719 3.2e-93 345.9 254 76.8
arahy.Tifrunner.gnm1.ann1.JCC7XL Arachis hypogaea HOM05D005498 ORTHO05D006719 4.2e-93 345.5 237 78.9
arahy.Tifrunner.gnm1.ann1.LXGX9H Arachis hypogaea HOM05D005498 ORTHO05D006719 4.2e-93 345.5 237 79.3
CsaV3_6G007610 Cucumis sativus L. HOM05D005498 ORTHO05D006719 4.2e-93 345.5 268 72.0
FAN17G1337 Fragaria x ananassa HOM05D005498 ORTHO05D006719 5.4e-93 345.1 252 77.4
Glyma.20G075100 Glycine max HOM05D005498 ORTHO05D006719 4.6e-92 342.0 277 68.2
PGSC0003DMG400014166 Solanum tuberosum HOM05D005498 ORTHO05D006719 4.6e-92 342.0 252 72.6
HPP92_001926 Vanilla planifolia HOM05D005498 ORTHO05D006356 6.0e-92 341.7 236 79.7
Phvul.003G001500 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 1.0e-91 340.9 254 75.2
Haze_12543 Corylus avellana HOM05D005498 ORTHO05D006719 2.3e-91 339.7 239 76.2
Solyc03g117940.3 Solanum lycopersicum HOM05D005498 ORTHO05D006719 2.3e-91 339.7 252 72.2
Sopen03g036840 Solanum pennellii HOM05D005498 ORTHO05D006719 2.3e-91 339.7 252 72.2
TAR622G0889 Trochodendron aralioides HOM05D005498 ORTHO05D006719 2.3e-91 339.7 265 72.5
CAN.G1008.34 Capsicum annuum HOM05D005498 ORTHO05D006719 3.0e-91 339.3 262 70.6
Potri.003G158800 Populus trichocarpa HOM05D005498 ORTHO05D006719 3.9e-91 339.0 266 71.8
VMungo0251G3521 Vigna mungo HOM05D005498 ORTHO05D006719 1.1e-90 337.4 254 76.0
Dinv13692 Davidia involucrata HOM05D005498 ORTHO05D006719 1.9e-90 336.7 243 75.3
Rhsim12G0182600 Rhododendron simsii HOM05D005498 ORTHO05D006719 2.5e-90 336.3 257 73.2
LjContig00470g0019612 Lotus japonicus HOM05D005498 ORTHO05D006719 7.3e-90 334.7 236 78.0
ECA246G1673 Erigeron canadensis HOM05D005498 ORTHO05D006719 1.2e-89 334.0 234 75.2
Medtr6g004180 Medicago truncatula HOM05D005498 ORTHO05D006719 1.2e-89 334.0 258 70.5
Nn3g16174 Nelumbo nucifera HOM05D005498 ORTHO05D006719 1.2e-89 334.0 257 74.3
Sabra03G0115200 Salix brachista HOM05D005498 ORTHO05D006719 1.2e-89 334.0 261 71.6
Nitab4.5_0000976g0330 Nicotiana tabacum HOM05D005498 ORTHO05D006719 1.6e-89 333.6 259 69.5
Lj3g0014785 Lotus japonicus HOM05D005498 ORTHO05D006719 2.1e-89 333.2 236 75.4
MBI07_g11055_MAGBIO Magnolia biondii HOM05D005498 ORTHO05D006719 6.2e-89 331.6 243 77.0
Potri.001G072100 Populus trichocarpa HOM05D005498 ORTHO05D006719 8.1e-89 331.3 266 71.1
Aqoxy3G01715 Aquilegia oxysepala HOM05D005498 ORTHO05D006719 1.1e-88 330.9 243 75.3
Migut.I00649 Erythranthe guttata HOM05D005498 ORTHO05D006719 1.1e-88 330.9 271 68.3
PSO017G5587 Papaver somniferum HOM05D005498 ORTHO05D006719 1.1e-88 330.9 264 71.2
TPR.G25230 Trifolium pratense HOM05D005498 ORTHO05D006719 1.4e-88 330.5 254 72.4
Actinidia36852 Actinidia chinensis HOM05D005498 ORTHO05D006719 2.4e-88 329.7 243 74.5
PSO478G3668 Papaver somniferum HOM05D005498 ORTHO05D006719 2.4e-88 329.7 243 77.0
SGA_v2.0_scaffold37G14665 Striga asiatica HOM05D005498 ORTHO05D006719 9.0e-88 327.8 243 74.5
Psat1g052840 Pisum sativum HOM05D005498 ORTHO05D006719 1.2e-87 327.4 254 72.8
CSS0015612 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 2.0e-87 326.6 262 70.6
MELO3C022370.2 Cucumis melo HOM05D005498 ORTHO05D006719 2.0e-87 326.6 261 69.7
AUR62037729 Chenopodium quinoa HOM05D005498 ORTHO05D006719 3.4e-87 325.9 255 72.9
HanXRQChr05g0154501 Helianthus annuus HOM05D005498 ORTHO05D006719 4.4e-87 325.5 268 67.2
Lj9A489T67 Lonicera japonica HOM05D005498 ORTHO05D006719 1.7e-86 323.6 287 66.2
SGA_v2.0_scaffold5G02818 Striga asiatica HOM05D005498 ORTHO05D006719 1.7e-86 323.6 263 68.1
ATR0582G093 Amborella trichopoda HOM05D005498 ORTHO05D006719 2.9e-86 322.8 265 68.3
HanXRQChr06g0174511 Helianthus annuus HOM05D005498 ORTHO05D006719 3.8e-86 322.4 255 70.2
Os02g0234800 Oryza sativa ssp. japonica HOM05D005498 ORTHO05D006719 3.8e-86 322.4 242 72.7
Hund15325 Selenicereus undatus HOM05D005498 ORTHO05D006719 4.9e-86 322.0 258 68.2
Lsat_1_v5_gn_5_9301 Lactuca sativa HOM05D005498 ORTHO05D006719 1.4e-85 320.5 266 65.4
Sabra01G0050700 Salix brachista HOM05D005498 ORTHO05D006719 1.9e-85 320.1 290 65.9
GSVIVG01001138001 Vitis vinifera HOM05D005498 ORTHO05D006719 1.9e-85 320.1 263 68.8
Lalb_Chr02g0144691 Lupinus albus HOM05D005498 ORTHO05D006719 2.4e-85 319.7 256 69.5
Atru.chr12.1486 Acer truncatum HOM05D005498 ORTHO05D006719 4.2e-85 318.9 262 69.8
MSTRG.22826 Avicennia marina HOM05D005498 ORTHO05D006719 1.6e-84 317.0 264 68.6
Zm00001eb064600 Zea mays HOM05D005498 ORTHO05D006719 3.5e-84 315.8 241 73.4
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 4.6e-84 315.5 260 68.5
CDE11G0700 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 7.8e-84 314.7 239 72.8
COL.COLO4_24568 Corchorus olitorius HOM05D005498 ORTHO05D006719 1.0e-83 314.3 264 71.2
Nitab4.5_0007669g0040 Nicotiana tabacum HOM05D005498 ORTHO05D006719 1.7e-83 313.5 250 70.4
SalBow7G1334 Salvia bowleyana HOM05D005498 ORTHO05D006719 4.8e-81 305.4 235 73.2
Sc04g0000070 Simmondsia chinensis HOM05D005498 ORTHO05D006719 1.5e-74 283.9 230 71.7
AUR62020276 Chenopodium quinoa HOM05D005498 ORTHO05D006719 2.4e-72 276.6 210 76.2
Hund15317 Selenicereus undatus HOM05D005498 ORTHO05D006719 4.5e-71 272.3 238 64.7
CSS0017542 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 3.8e-70 269.2 258 62.0
Mapoly0014s0064 Marchantia polymorpha HOM05D005498 ORTHO05D006719 2.1e-68 263.5 240 62.1
Cpa.g.sc2660.1 Carica papaya HOM05D005498 ORTHO05D006719 7.9e-68 261.5 153 90.2
Sc04g0000010 Simmondsia chinensis HOM05D005498 ORTHO05D006719 3.9e-67 259.2 216 70.4
Ah.10g024870 Amaranthus hybridus HOM05D005498 ORTHO05D006719 1.8e-64 250.4 153 85.6
Pp3c20_1630 Physcomitrium patens HOM05D005498 ORTHO05D006719 5.8e-63 245.4 267 54.7
Pp3c23_20060 Physcomitrium patens HOM05D005498 ORTHO05D006719 1.0e-62 244.6 259 58.3
CSS0028024 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 2.9e-62 243.0 281 53.7
Pp3c8_21390 Physcomitrium patens HOM05D005498 ORTHO05D006719 4.2e-61 239.2 262 56.5
unitig_8.g3047 Utricularia gibba HOM05D005498 ORTHO05D006719 1.5e-55 220.7 258 53.1
Gorai.007G212800 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.8e-51 207.2 154 71.4
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 1.5e-50 204.1 281 44.5
Peaxi162Scf00314g00830 Petunia axillaris HOM05D005498 ORTHO05D006719 2.0e-50 203.8 200 60.5
DCAR_021388 Daucus carota HOM05D005498 ORTHO05D006719 2.8e-49 199.9 125 82.4
AagrBONN_evm.TU.Sc2ySwM_362.2343 Anthoceros agrestis HOM05D005498 ORTHO05D006719 1.1e-48 198.0 192 55.7
SMO203G0044 Selaginella moellendorffii HOM05D005498 ORTHO05D006719 5.0e-46 189.1 153 67.3
Gorai.006G052400 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.4e-45 187.6 153 68.0
Gohir.D11G198700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 4.8e-41 172.6 154 64.3
Phvul.009G235000 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 2.0e-39 167.2 155 63.9
Gohir.D13G071700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.0e-38 164.9 154 61.7
Gohir.D13G083750 Gossypium hirsutum HOM05D005498 ORTHO05D006719 3.8e-38 162.9 154 61.0
Actinidia08921 Actinidia chinensis HOM05D005498 ORTHO05D006719 6.5e-38 162.2 173 56.6
PRCOL_00001779 Prasinoderma coloniale HOM05D005498 ORTHO05D006719 5.2e-35 152.5 234 40.2
Gorai.010G065400 Gossypium raimondii HOM05D005498 ORTHO05D006719 2.0e-31 140.6 105 69.5
FAN12G0959 Fragaria x ananassa HOM05D005498 ORTHO05D006719 8.0e-28 128.6 67 91.0
Oeu027824.1 Olea europaea HOM05D005498 ORTHO05D006719 1.2e-20 104.8 254 33.9
arahy.Tifrunner.gnm1.ann1.UV1K7Q Arachis hypogaea HOM05D005498 ORTHO05D006719 6.8e-19 99.0 73 65.8
Cpa.g.sc38.27 Carica papaya HOM05D005498 ORTHO05D006719 6.3e-17 92.4 90 58.9
Ah.10g024860 Amaranthus hybridus HOM05D005498 ORTHO05D006719 2.3e-14 84.0 119 47.1
MELO3C026686.2 Cucumis melo HOM05D005498 ORTHO05D006719 2.3e-14 84.0 137 43.8
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 5.2e-11 72.8 42 76.2
RcHm_v2.0_Chr4g0427471 Rosa chinensis HOM05D000753 ORTHO05D006719 2.2e-09 67.4 115 45.2
BcaC07g41861 Brassica carinata HOM05D005498 ORTHO05D006719 1.1e-08 65.1 60 61.7
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 7.8e-07 58.9 173 31.2
PSO591G0416 Papaver somniferum HOM05D005498 ORTHO05D006719 1.7e-06 57.8 99 41.4


User provided reference genes

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