Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1888.2 985 100.0
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1858.2 989 98.8
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 0.0e+00 1854.7 989 98.7
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 0.0e+00 1833.9 985 97.6
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 0.0e+00 1772.3 985 93.7
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 0.0e+00 1754.2 987 91.9
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 0.0e+00 1738.4 994 91.6
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 0.0e+00 1734.5 987 91.8
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 0.0e+00 1719.9 997 90.7
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 0.0e+00 1698.3 985 88.6
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 0.0e+00 1635.2 986 86.2
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 0.0e+00 1619.8 986 87.0
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 0.0e+00 1501.9 982 78.9
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 0.0e+00 1498.4 980 79.1
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 0.0e+00 1488.8 980 78.5
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1487.6 989 76.9
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1486.9 982 77.7
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1482.6 980 77.6
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 0.0e+00 1482.2 982 78.5
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 0.0e+00 1481.8 982 78.2
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 0.0e+00 1478.4 934 79.1
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1478.0 984 76.6
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 0.0e+00 1477.2 983 77.7
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1477.2 983 76.6
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 0.0e+00 1471.1 987 77.0
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1470.7 980 77.6
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 0.0e+00 1470.7 980 76.8
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1469.9 981 77.3
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 0.0e+00 1468.8 983 77.0
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1467.6 982 76.6
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 0.0e+00 1465.7 985 75.8
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1465.7 987 75.6
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1465.3 985 76.9
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1464.9 985 75.7
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1464.9 979 77.1
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1462.6 982 75.8
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1461.0 988 76.7
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1461.0 980 77.3
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1460.7 982 77.4
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1460.3 980 75.2
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1459.9 981 76.0
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 0.0e+00 1459.9 980 77.3
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 0.0e+00 1459.9 933 77.4
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 0.0e+00 1459.5 1012 75.7
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1459.1 980 76.2
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1457.2 978 75.2
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 0.0e+00 1456.0 982 76.4
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1455.3 980 76.1
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1454.5 980 76.1
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 0.0e+00 1453.7 982 76.3
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1451.8 980 75.9
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1451.4 979 77.6
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 0.0e+00 1451.0 979 75.3
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 0.0e+00 1449.5 933 77.2
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1447.2 980 75.7
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1445.6 983 75.8
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1444.9 981 75.8
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1441.4 979 77.4
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1441.0 980 75.4
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 0.0e+00 1440.6 980 74.6
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 0.0e+00 1439.5 980 76.4
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 0.0e+00 1438.7 985 74.4
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 0.0e+00 1436.0 984 76.0
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1435.6 981 76.1
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1435.6 980 76.2
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 0.0e+00 1434.9 937 76.8
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 0.0e+00 1433.7 983 74.4
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1432.5 979 75.1
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1431.0 980 75.9
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1431.0 980 75.5
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1430.2 978 76.1
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1427.9 975 74.6
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1427.5 997 74.1
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1427.2 983 74.9
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 0.0e+00 1424.8 981 74.7
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 0.0e+00 1424.1 979 75.0
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1421.8 975 74.1
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 0.0e+00 1417.9 980 74.3
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1416.7 981 75.8
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1412.9 984 75.6
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1412.5 981 74.6
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1408.3 1009 71.6
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 0.0e+00 1404.0 985 73.3
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1404.0 990 73.5
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1401.7 941 73.4
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1397.9 938 74.0
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1391.3 1003 71.3
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1390.9 990 73.0
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 0.0e+00 1389.8 988 73.4
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1384.8 941 72.1
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1382.5 938 74.2
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 0.0e+00 1371.7 979 72.7
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1365.5 929 75.5
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 0.0e+00 1364.7 983 72.2
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 0.0e+00 1364.0 1202 62.8
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 0.0e+00 1351.3 982 70.1
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 0.0e+00 1346.3 983 68.4
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 0.0e+00 1345.9 841 77.9
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 0.0e+00 1344.7 933 73.2
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 0.0e+00 1327.4 985 66.9
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1327.0 973 70.3
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1325.8 980 69.4
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 0.0e+00 1316.2 984 69.8
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1308.9 843 75.7
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1308.5 990 69.8
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1278.1 933 68.0
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 0.0e+00 1273.1 948 69.0
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1271.5 799 80.1
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1263.8 942 68.3
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 0.0e+00 1257.3 979 66.4
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 0.0e+00 1248.8 799 77.7
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1187.2 734 78.3
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 0.0e+00 1181.0 952 61.8
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1177.9 800 71.8
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1116.3 973 59.7
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 0.0e+00 1097.4 1000 58.2
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 0.0e+00 1080.5 1003 55.6
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 2.7e-311 1072.0 979 60.3
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 1.9e-309 1065.8 701 75.3
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 7.1e-304 1047.3 996 55.3
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 2.1e-300 1035.8 735 74.3
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 4.3e-285 984.9 676 74.3
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 6.3e-276 954.5 799 59.2
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 8.0e-263 911.0 606 76.6
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 1.4e-262 910.2 688 70.1
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 3.7e-236 822.4 565 74.0
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 5.6e-224 781.9 531 74.2
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 5.6e-216 755.4 606 65.8
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.7e-204 717.2 510 69.8
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 3.4e-197 693.0 456 80.0
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 3.4e-181 639.8 386 79.5
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.2e-172 610.5 418 77.0
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 2.7e-170 603.6 1064 37.2
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 2.2e-143 514.2 420 61.4
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 5.0e-140 503.1 429 58.7
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 3.6e-138 496.9 838 37.4
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 5.2e-121 439.9 480 51.9
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 3.7e-111 407.1 253 77.9
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 7.8e-109 399.4 224 85.7
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 3.6e-106 390.6 279 69.9
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 3.4e-104 384.0 810 33.0
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 1.3e-103 382.1 1066 26.7
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 2.4e-94 351.3 253 68.4
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 2.4e-94 351.3 253 68.4
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 4.9e-87 327.0 365 44.7
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 2.1e-85 321.6 256 64.8
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 9.6e-83 312.8 300 56.7
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 2.5e-54 218.4 146 69.9
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.3e-50 206.1 169 52.7
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 6.3e-50 203.8 149 63.8
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 6.3e-50 203.8 149 63.8
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 1.1e-46 193.0 139 64.7
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 7.4e-43 180.3 258 45.7
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.4e-41 176.0 118 68.6
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 2.0e-40 172.2 99 83.8
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 7.2e-38 163.7 104 78.8
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 6.1e-37 160.6 141 61.0
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 5.7e-35 154.1 674 23.6
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 5.7e-35 154.1 155 46.5
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 6.3e-34 150.6 166 49.4
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 7.0e-33 147.1 76 85.5
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.2e-32 146.4 76 85.5
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.6e-32 146.0 79 83.5
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.0e-32 145.6 76 84.2
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 5.0e-31 141.0 115 64.3
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 1.5e-30 139.4 88 77.3
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.9e-30 139.0 80 77.5
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.5e-30 138.7 85 76.5
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 2.1e-29 135.6 94 72.3
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.2e-26 125.6 65 89.2
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 1.7e-23 115.9 136 45.6
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 1.1e-22 113.2 79 74.7
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 2.5e-22 112.1 143 49.7
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 3.4e-19 101.7 111 47.7
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 4.5e-16 91.3 125 43.2
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 7.7e-16 90.5 82 56.1
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 1.0e-15 90.1 134 40.3
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 2.0e-11 75.9 56 64.3
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 3.5e-08 65.1 46 56.5
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 8.6e-07 60.5 42 61.9


User provided reference genes

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