Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p49900 Brassica napus HOM05D004526 ORTHO05D005548 3.0e-246 854.7 435 100.0
BcaC02g08842 Brassica carinata HOM05D004526 ORTHO05D005548 1.1e-245 852.8 435 99.5
A04p15620 Brassica napus HOM05D004526 ORTHO05D005548 2.9e-233 811.6 435 94.7
BraA04t17197Z Brassica rapa HOM05D004526 ORTHO05D005548 3.9e-230 801.2 451 91.4
BolC4t26581H Brassica oleracea HOM05D004526 ORTHO05D005548 1.1e-213 746.5 408 93.6
BcaB06g27742 Brassica carinata HOM05D004526 ORTHO05D005548 7.7e-202 707.2 433 84.3
AL7G50210 Arabidopsis lyrata HOM05D004526 ORTHO05D005548 1.3e-164 583.6 423 70.7
AT5G39930 Arabidopsis thaliana HOM05D004526 ORTHO05D005548 9.2e-163 577.4 424 70.5
Thhalv10028283m.g Eutrema salsugineum HOM05D004526 ORTHO05D005548 1.1e-152 543.9 428 67.1
Sp7g01800 Schrenkiella parvula HOM05D004526 ORTHO05D005548 1.3e-140 503.8 434 65.7
Thecc.04G074400 Theobroma cacao HOM05D004526 ORTHO05D005548 2.3e-137 493.0 445 57.5
THA.LOC104811064 Tarenaya hassleriana HOM05D004526 ORTHO05D005548 1.3e-135 487.3 445 57.5
CARHR262250 Cardamine hirsuta HOM05D004526 ORTHO05D005548 1.6e-135 486.9 434 62.4
COL.COLO4_25181 Corchorus olitorius HOM05D004526 ORTHO05D005548 4.8e-135 485.3 445 56.2
Duzib147G0459 Durio zibethinus HOM05D004526 ORTHO05D005548 6.2e-135 485.0 445 56.6
Gohir.A05G364100 Gossypium hirsutum HOM05D004526 ORTHO05D005548 2.6e-133 479.6 446 55.8
Gohir.D04G050600 Gossypium hirsutum HOM05D004526 ORTHO05D005548 3.4e-133 479.2 446 55.8
Gorai.012G056100 Gossypium raimondii HOM05D004526 ORTHO05D005548 3.4e-133 479.2 446 55.8
Cfa007509 Carpinus fangiana HOM05D004526 ORTHO05D005548 1.7e-132 476.9 445 55.7
CiPaw.04G020200 Carya illinoinensis HOM05D004526 ORTHO05D005548 8.4e-132 474.6 445 55.5
Dinv07025 Davidia involucrata HOM05D004526 ORTHO05D005548 7.1e-131 471.5 444 54.7
BcaB04g19307 Brassica carinata HOM05D004526 ORTHO05D005548 9.3e-131 471.1 443 55.1
Potri.017G077200 Populus trichocarpa HOM05D004526 ORTHO05D005548 1.2e-130 470.7 433 56.6
Aa31LG5G15080 Aethionema arabicum HOM05D004526 ORTHO05D005548 1.6e-130 470.3 446 55.8
CiPaw.03G030200 Carya illinoinensis HOM05D004526 ORTHO05D005548 1.6e-130 470.3 445 55.3
CsaV3_5G037880 Cucumis sativus L. HOM05D004526 ORTHO05D005548 1.6e-130 470.3 440 54.8
BcaC01g04355 Brassica carinata HOM05D004526 ORTHO05D005548 2.1e-130 469.9 444 55.0
BolC3t16397H Brassica oleracea HOM05D004526 ORTHO05D005548 2.1e-130 469.9 444 55.0
Glyma.20G242900 Glycine max HOM05D004526 ORTHO05D005548 2.1e-130 469.9 445 55.3
ClCG09G018400 Citrullus lanatus HOM05D004526 ORTHO05D005548 3.5e-130 469.2 441 54.4
Glyma.10G292700 Glycine max HOM05D004526 ORTHO05D005548 3.5e-130 469.2 423 56.5
Sp3g03530 Schrenkiella parvula HOM05D004526 ORTHO05D005548 4.6e-130 468.8 442 55.2
A03p33780 Brassica napus HOM05D004526 ORTHO05D005548 6.0e-130 468.4 443 55.1
C03p41080 Brassica napus HOM05D004526 ORTHO05D005548 6.0e-130 468.4 444 54.7
AT3G04680 Arabidopsis thaliana HOM05D004526 ORTHO05D005548 7.9e-130 468.0 442 54.8
BraA03t12552Z Brassica rapa HOM05D004526 ORTHO05D005548 1.8e-129 466.8 443 54.9
CARHR078910 Cardamine hirsuta HOM05D004526 ORTHO05D005548 1.8e-129 466.8 441 55.1
Carub.0003s0384 Capsella rubella HOM05D004526 ORTHO05D005548 3.0e-129 466.1 442 54.8
QL02p080561 Quercus lobata HOM05D004526 ORTHO05D005548 3.0e-129 466.1 446 54.9
Haze_14584 Corylus avellana HOM05D004526 ORTHO05D005548 3.9e-129 465.7 471 53.1
Thhalv10020725m.g Eutrema salsugineum HOM05D004526 ORTHO05D005548 3.9e-129 465.7 442 55.2
Manes.17G021000 Manihot esculenta HOM05D004526 ORTHO05D005548 3.9e-129 465.7 445 54.4
GSVIVG01032607001 Vitis vinifera HOM05D004526 ORTHO05D005548 5.1e-129 465.3 422 54.7
Phvul.007G007300 Phaseolus vulgaris HOM05D004526 ORTHO05D005548 6.7e-129 464.9 445 54.2
Sed0004091 Sechium edule HOM05D004526 ORTHO05D005548 6.7e-129 464.9 440 54.3
Ca_11340_v3 Cicer arietinum L. HOM05D004526 ORTHO05D005548 8.7e-129 464.5 434 54.4
PGR142G4111 Punica granatum HOM05D004526 ORTHO05D005548 8.7e-129 464.5 431 54.5
Psat6g239400 Pisum sativum HOM05D004526 ORTHO05D005548 1.1e-128 464.2 429 54.5
PGR142G2860 Punica granatum HOM05D004526 ORTHO05D005548 2.5e-128 463.0 431 54.3
arahy.Tifrunner.gnm1.ann1.S1RF4U Arachis hypogaea HOM05D004526 ORTHO05D005548 3.3e-128 462.6 422 56.9
PGSC0003DMG400030284 Solanum tuberosum HOM05D004526 ORTHO05D005548 3.3e-128 462.6 440 53.9
Prupe.3G272100 Prunus persica HOM05D004526 ORTHO05D005548 4.3e-128 462.2 424 56.1
Nitab4.5_0000157g0090 Nicotiana tabacum HOM05D004526 ORTHO05D005548 7.4e-128 461.5 440 53.6
arahy.Tifrunner.gnm1.ann1.31SG4H Arachis hypogaea HOM05D004526 ORTHO05D005548 1.3e-127 460.7 422 56.9
Medtr1g116060 Medicago truncatula HOM05D004526 ORTHO05D005548 1.3e-127 460.7 430 54.9
Sopen01g004780 Solanum pennellii HOM05D004526 ORTHO05D005548 1.6e-127 460.3 440 53.4
AL3G14740 Arabidopsis lyrata HOM05D004526 ORTHO05D005548 2.1e-127 459.9 442 54.5
Solyc01g009290.4 Solanum lycopersicum HOM05D004526 ORTHO05D005548 2.1e-127 459.9 440 53.6
CSS0019571 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 2.8e-127 459.5 422 55.0
PSO478G0915 Papaver somniferum HOM05D004526 ORTHO05D005548 3.7e-127 459.1 445 53.7
Lalb_Chr21g0307111 Lupinus albus HOM05D004526 ORTHO05D005548 4.8e-127 458.8 449 54.1
Nn3g17130 Nelumbo nucifera HOM05D004526 ORTHO05D005548 4.8e-127 458.8 422 55.9
arahy.Tifrunner.gnm1.ann1.PC3EEW Arachis hypogaea HOM05D004526 ORTHO05D005548 6.2e-127 458.4 422 56.4
Dinv06512 Davidia involucrata HOM05D004526 ORTHO05D005548 8.2e-127 458.0 425 54.8
Lj7A401T78 Lonicera japonica HOM05D004526 ORTHO05D005548 1.4e-126 457.2 444 52.9
Peaxi162Scf00345g00811 Petunia axillaris HOM05D004526 ORTHO05D005548 1.4e-126 457.2 440 52.7
MSTRG.1703 Avicennia marina HOM05D004526 ORTHO05D005548 1.8e-126 456.8 442 52.5
CAN.G226.26 Capsicum annuum HOM05D004526 ORTHO05D005548 1.8e-126 456.8 440 52.7
Hund13244 Selenicereus undatus HOM05D004526 ORTHO05D005548 2.4e-126 456.4 441 53.7
unitig_578.g15969 Utricularia gibba HOM05D004526 ORTHO05D005548 5.3e-126 455.3 442 53.2
Aqoxy3G03268 Aquilegia oxysepala HOM05D004526 ORTHO05D005548 6.9e-126 454.9 446 53.8
FAN02G4162 Fragaria x ananassa HOM05D004526 ORTHO05D005548 6.9e-126 454.9 425 54.6
MD17G1047000 Malus domestica HOM05D004526 ORTHO05D005548 6.9e-126 454.9 428 55.1
Migut.E01591 Erythranthe guttata HOM05D004526 ORTHO05D005548 1.2e-125 454.1 442 52.0
Eucgr.I01917 Eucalyptus grandis HOM05D004526 ORTHO05D005548 1.2e-125 454.1 421 53.2
HanXRQChr09g0265571 Helianthus annuus HOM05D004526 ORTHO05D005548 1.5e-125 453.8 425 53.9
PSO017G3834 Papaver somniferum HOM05D004526 ORTHO05D005548 1.5e-125 453.8 445 53.0
FvH4_6g49260 Fragaria vesca HOM05D004526 ORTHO05D005548 2.6e-125 453.0 425 54.6
Cc08_g10980 Coffea canephora HOM05D004526 ORTHO05D005548 1.3e-124 450.7 444 52.5
RcHm_v2.0_Chr2g0169161 Rosa chinensis HOM05D004526 ORTHO05D005548 1.3e-124 450.7 425 53.6
Atru.chr8.1914 Acer truncatum HOM05D004526 ORTHO05D005548 1.7e-124 450.3 447 53.0
VMungo0720G0008 Vigna mungo HOM05D004526 ORTHO05D005548 1.7e-124 450.3 432 53.9
Lsat_1_v5_gn_4_176840 Lactuca sativa HOM05D004526 ORTHO05D005548 2.9e-124 449.5 444 52.0
TAR481G0009 Trochodendron aralioides HOM05D004526 ORTHO05D005548 3.8e-124 449.1 445 52.1
Carub.0007s3580 Capsella rubella HOM05D004526 ORTHO05D005548 4.9e-124 448.7 420 59.5
SalBow1G4721 Salvia bowleyana HOM05D004526 ORTHO05D005548 6.5e-124 448.4 440 53.0
PSO591G0197 Papaver somniferum HOM05D004526 ORTHO05D005548 1.4e-123 447.2 422 55.0
Sc11g0006930 Simmondsia chinensis HOM05D004526 ORTHO05D005548 1.4e-123 447.2 420 54.0
TWI60G0005 Tripterygium wilfordii HOM05D004526 ORTHO05D005548 1.4e-123 447.2 422 54.0
DCAR_021672 Daucus carota HOM05D004526 ORTHO05D005548 1.9e-123 446.8 423 53.9
FAN05G4948 Fragaria x ananassa HOM05D004526 ORTHO05D005548 3.2e-123 446.0 442 52.0
Oeu018626.2 Olea europaea HOM05D004526 ORTHO05D005548 5.5e-123 445.3 480 49.4
PSO832G1140 Papaver somniferum HOM05D004526 ORTHO05D005548 5.5e-123 445.3 422 54.7
Ciclev10011737m.g Citrus clementina HOM05D004526 ORTHO05D005548 1.6e-122 443.7 423 55.1
Actinidia06070 Actinidia chinensis HOM05D004526 ORTHO05D005548 2.7e-122 443.0 431 52.9
EL10Ac2g02933 Beta vulgaris HOM05D004526 ORTHO05D005548 3.5e-122 442.6 423 53.0
FAN09G4881 Fragaria x ananassa HOM05D004526 ORTHO05D005548 1.3e-121 440.7 458 50.9
Sabra17G0069000 Salix brachista HOM05D004526 ORTHO05D005548 6.7e-121 438.3 431 53.4
RhsimUnG0055200 Rhododendron simsii HOM05D004526 ORTHO05D005548 1.1e-120 437.6 444 50.7
Nn4g23045 Nelumbo nucifera HOM05D004526 ORTHO05D005548 2.2e-119 433.3 452 51.8
Sp1g35350 Schrenkiella parvula HOM05D004526 ORTHO05D005548 6.3e-119 431.8 432 53.5
FAN14G2223 Fragaria x ananassa HOM05D004526 ORTHO05D005548 9.0e-118 427.9 458 50.0
arahy.Tifrunner.gnm1.ann1.C6A6VI Arachis hypogaea HOM05D004526 ORTHO05D005548 1.2e-117 427.6 422 52.8
TAR622G0275 Trochodendron aralioides HOM05D004526 ORTHO05D005548 2.6e-117 426.4 414 54.1
HanXRQChr12g0357441 Helianthus annuus HOM05D004526 ORTHO05D005548 1.3e-116 424.1 424 51.7
MD09G1046200 Malus domestica HOM05D004526 ORTHO05D005548 8.5e-116 421.4 421 53.0
Lj5g0010112 Lotus japonicus HOM05D004526 ORTHO05D004861 2.7e-114 416.4 401 54.6
CDE04G0248 Ceratophyllum demersum HOM05D004526 ORTHO05D005548 1.0e-113 414.5 432 50.7
ATR0051G026 Amborella trichopoda HOM05D004526 ORTHO05D005548 1.4e-113 414.1 429 50.3
Mapoly0016s0080 Marchantia polymorpha HOM05D004526 ORTHO05D005548 3.3e-112 409.5 431 48.5
Zm00001eb205260 Zea mays HOM05D004526 ORTHO05D005548 2.2e-111 406.8 441 47.8
ECA232G3358 Erigeron canadensis HOM05D004526 ORTHO05D005548 3.7e-111 406.0 444 47.7
MELO3C021974.2 Cucumis melo HOM05D004526 ORTHO05D005548 4.8e-111 405.6 395 53.2
SEGI_10762 Sequoiadendron giganteum HOM05D004526 ORTHO05D005548 2.6e-109 399.8 422 48.8
HPP92_012836 Vanilla planifolia HOM05D004526 ORTHO05D005548 3.2e-107 392.9 419 49.4
AagrBONN_evm.TU.Sc2ySwM_344.3939 Anthoceros agrestis HOM05D004526 ORTHO05D005548 5.5e-107 392.1 453 45.5
Nitab4.5_0001504g0050 Nicotiana tabacum HOM05D004526 ORTHO05D005548 1.0e-105 387.9 614 38.3
MD09G1046500 Malus domestica HOM05D004526 ORTHO05D005548 1.8e-105 387.1 421 50.4
SMO165G0052 Selaginella moellendorffii HOM05D004526 ORTHO05D005548 5.1e-105 385.6 428 47.4
Os02g0217500 Oryza sativa ssp. japonica HOM05D004526 ORTHO05D005548 4.4e-104 382.5 423 46.1
CSS0037061 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 2.6e-101 373.2 358 53.6
HPP92_009728 Vanilla planifolia HOM05D004526 ORTHO05D005548 2.5e-99 366.7 408 46.8
CBR_g42172 Chara braunii HOM05D004526 ORTHO05D005548 7.2e-91 338.6 444 40.8
AUR62031643 Chenopodium quinoa HOM05D004526 ORTHO05D005548 1.7e-87 327.4 331 51.4
C06p02960 Brassica napus HOM05D004526 ORTHO05D005548 3.1e-86 323.2 452 44.2
BolC6t35419H Brassica oleracea HOM05D004526 ORTHO05D005548 3.1e-86 323.2 452 44.2
SpUn0485_0020 Schrenkiella parvula HOM05D004526 ORTHO05D005548 1.6e-85 320.9 258 69.0
AUR62038875 Chenopodium quinoa HOM05D004526 ORTHO05D005548 2.7e-85 320.1 326 51.5
Pp3c21_6910 Physcomitrium patens HOM05D004526 ORTHO05D005548 5.5e-83 312.4 345 46.1
vmacro05738 Vaccinium macrocarpon HOM05D004526 ORTHO05D005548 5.5e-83 312.4 261 58.6
BcaC08g43036 Brassica carinata HOM05D004526 ORTHO05D005548 8.0e-82 308.5 446 42.6
TAR305G0002 Trochodendron aralioides HOM05D004526 ORTHO05D005548 3.0e-81 306.6 295 53.9
Cfa007708 Carpinus fangiana HOM05D004526 ORTHO05D005548 6.3e-79 298.9 414 43.5
PRCOL_00003252 Prasinoderma coloniale HOM05D004526 ORTHO05D005548 5.9e-77 292.4 425 38.1
MCO09G184 Micromonas commoda HOM05D004526 ORTHO05D005548 2.3e-76 290.4 447 37.1
SHI08813 Sapria himalayana HOM05D004526 ORTHO05D005548 5.4e-70 269.2 419 38.9
Cre03.g194800 Chlamydomonas reinhardtii HOM05D004526 ORTHO05D005548 1.7e-63 247.7 418 35.4
arahy.Tifrunner.gnm1.ann1.QUI3Q9 Arachis hypogaea HOM05D004526 ORTHO05D005548 2.0e-61 240.7 254 52.4
arahy.Tifrunner.gnm1.ann1.9G88ZW Arachis hypogaea HOM05D004526 ORTHO05D005548 2.7e-61 240.4 191 63.9
CSS0008092 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 3.6e-58 229.9 394 37.8
CSS0012548 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 6.2e-58 229.2 394 39.1
BcaB07g33761 Brassica carinata HOM05D004526 ORTHO05D005548 6.4e-55 219.2 343 36.7
TPR.G10385 Trifolium pratense HOM05D004526 ORTHO05D005548 7.8e-53 212.2 230 49.6
Actinidia23573 Actinidia chinensis HOM05D004526 ORTHO05D005548 3.4e-40 170.2 254 41.7
Sp7g07820 Schrenkiella parvula HOM05D004526 ORTHO05D005548 6.4e-39 166.0 118 72.9
Actinidia27487 Actinidia chinensis HOM05D004526 ORTHO05D005548 1.7e-36 157.9 239 41.4
AUR62010753 Chenopodium quinoa HOM05D004526 ORTHO05D005548 1.7e-36 157.9 198 45.5
arahy.Tifrunner.gnm1.ann1.HJC8LN Arachis hypogaea HOM05D004526 ORTHO05D005548 1.5e-32 144.8 236 41.1
Sp5g20800 Schrenkiella parvula HOM05D004526 ORTHO05D005548 1.1e-30 138.7 103 72.8
arahy.Tifrunner.gnm1.ann1.NNND2U Arachis hypogaea HOM05D004526 ORTHO05D005548 2.7e-29 134.0 212 42.9
Cpa.g.sc14.41 Carica papaya HOM05D004526 ORTHO05D005548 4.6e-29 133.3 133 53.4
Cpa.g.c42185 Carica papaya HOM05D004526 ORTHO05D005548 2.3e-20 104.4 61 80.3
TAR629G3114 Trochodendron aralioides HOM05D004526 ORTHO05D002794 3.4e-16 90.5 65 64.6
arahy.Tifrunner.gnm1.ann1.TUDV7U Arachis hypogaea HOM05D004526 ORTHO05D005548 4.2e-14 83.6 92 48.9
MD09G1046100 Malus domestica HOM05D004526 ORTHO05D005548 8.7e-12 75.9 74 52.7
AT5G39920 Arabidopsis thaliana HOM05D055290 ORTHO05D038628 2.1e-10 71.2 45 73.3
A10p26670 Brassica napus HOM05D005494 ORTHO05D006689 1.8e-09 68.2 170 25.3
C09p65840 Brassica napus HOM05D005494 ORTHO05D006689 6.9e-09 66.2 163 26.4
TPR.G73 Trifolium pratense HOM05D004526 ORTHO05D005548 1.2e-08 65.5 75 45.3
AagrBONN_evm.TU.Sc2ySwM_344.720 Anthoceros agrestis HOM05D005494 ORTHO05D006689 2.0e-08 64.7 145 29.0
Aa31LG10G14040 Aethionema arabicum HOM05D005494 ORTHO05D006689 3.4e-08 63.9 150 28.7
Aa31LG3G16120 Aethionema arabicum HOM05D005494 ORTHO05D006689 7.6e-08 62.8 160 28.1
BcaC04g19267 Brassica carinata HOM05D005494 ORTHO05D006689 7.6e-08 62.8 160 26.2
CAN.G742.26 Capsicum annuum HOM05D004526 ORTHO05D005548 7.6e-08 62.8 120 26.7
CANSAT80G2452 Cannabis sativa HOM05D005494 ORTHO05D006689 1.0e-07 62.4 161 26.1
Gohir.A12G174400 Gossypium hirsutum HOM05D005494 ORTHO05D006689 1.3e-07 62.0 147 26.5
Gohir.D12G177100 Gossypium hirsutum HOM05D005494 ORTHO05D006689 1.3e-07 62.0 147 26.5
Gorai.008G189500 Gossypium raimondii HOM05D005494 ORTHO05D006689 1.3e-07 62.0 147 26.5
Thhalv10000203m.g Eutrema salsugineum HOM05D005494 ORTHO05D006689 1.7e-07 61.6 155 27.1
Lj5C118G23 Lonicera japonica HOM05D005494 ORTHO05D006689 5.0e-07 60.1 149 24.8
THA.LOC104814121 Tarenaya hassleriana HOM05D005494 ORTHO05D006689 8.4e-07 59.3 157 24.8
TWI09G1329 Tripterygium wilfordii HOM05D005494 ORTHO05D006689 8.4e-07 59.3 161 25.5
Oeu038310.1 Olea europaea HOM05D005494 ORTHO05D006689 1.1e-06 58.9 198 24.2
Dinv13115 Davidia involucrata HOM05D005494 ORTHO05D006689 1.4e-06 58.5 147 26.5
FAN13G0712 Fragaria x ananassa HOM05D005494 ORTHO05D006689 1.4e-06 58.5 150 26.7
SHI08814 Sapria himalayana HOM05D004526 ORTHO05D005548 1.4e-06 58.5 61 45.9
Migut.D01889 Erythranthe guttata HOM05D005494 ORTHO05D006689 1.9e-06 58.2 170 24.1
Cpa.g.sc30.67 Carica papaya HOM05D005494 ORTHO05D006689 2.5e-06 57.8 158 24.7
Mapoly0002s0051 Marchantia polymorpha HOM05D005494 ORTHO05D006689 2.5e-06 57.8 162 25.3
Peaxi162Scf00017g02118 Petunia axillaris HOM05D005494 ORTHO05D006689 3.2e-06 57.4 154 23.4
Thecc.10G120900 Theobroma cacao HOM05D005494 ORTHO05D006689 3.2e-06 57.4 158 25.9
Psat7g079600 Pisum sativum HOM05D005494 ORTHO05D006689 4.2e-06 57.0 159 26.4
Sp6g32480 Schrenkiella parvula HOM05D005494 ORTHO05D006689 5.5e-06 56.6 150 28.0
AL6G21610 Arabidopsis lyrata HOM05D005494 ORTHO05D006689 9.3e-06 55.8 142 25.4
AT5G11010 Arabidopsis thaliana HOM05D005494 ORTHO05D006689 9.3e-06 55.8 142 25.4


User provided reference genes

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