Gene: AT5G11010

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G11010
  • Transcript Identifier AT5G11010.3
  • Gene Type Coding gene
  • Location Chr5 : 3484176-3486067 : positive

Gene Family Information

  • ID HOM05D005494
  • #Genes/#Species 139/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G11010.3
  • uniprot Q8VYP6

Descriptions

  • Description Pre-mRNA cleavage complex II protein family
  • Computational description Pre-mRNA cleavage complex II protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pre-mRNA cleavage complex II Clp1 (InterPro:IPR010655); BEST Arabidopsis thaliana protein match is: CLP-similar protein 3 (TAIR:AT3G04680.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Computational description Pre-mRNA cleavage complex II protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pre-mRNA cleavage complex II Clp1 (InterPro:IPR010655); BEST Arabidopsis thaliana protein match is: CLP-similar protein 3 (TAIR:AT3G04680.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IBA
Gene OntologyRNA processing1
GO:0006396
IEA
InterProRNA processing
GO:0016310
IEA
GOA Databasephosphorylation
GO:0006364
IEA
GOA DatabaserRNA processing
GO:0006364
ISS
Gene OntologyrRNA processing
GO:0000448
IBA
Gene Ontologycleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0051731
IEA
GOA Databasepolynucleotide 5'-hydroxyl-kinase activity
GO:0051731
ISS, IBA
Gene Ontologypolynucleotide 5'-hydroxyl-kinase activity1
GO:0051731
IEA
InterPropolynucleotide 5'-hydroxyl-kinase activity
GO:0016301
IEA
GOA Databasekinase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0005515
IPI
Gene Ontologyprotein binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus1
GO:0005730
IEA
GOA Databasenucleolus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR032319 Polyribonucleotide 5'-hydroxyl-kinase Clp1, P-loop domain
IPR045116 Polyribonucleotide 5-hydroxyl-kinase Clp1/Grc3
Mapman id Description
17.1.1.9.2 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.ITS2 rRNA removal.polynucleotide kinase (GRC3)