Gene: Sopen01g004780
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen01g004780
- Transcript Identifier Sopen01g004780.1
- Gene Type Coding gene
- Location Spenn-ch01 : 3686353-3696458 : negative
Gene Family Information
- ID HOM05D004526
- #Genes/#Species 159/95
- Phylogenetic origin
- ID ORTHO05D005548
- #Genes/#Species 156/94
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen01g004780.1
Descriptions
- Description Encodes a nuclear protein that functions in mRNA processing. Mutations in this gene cause embryo lethality and reduced transmission through the female gametophyte. Over-expression of a CLPS3:TAP protein changes the relative levels of two alternatively processed FCA transcripts. It also causes abnormal phyllotaxy and flower development, early flowering under long and short days, and increased levels of CUC1 and WUS expression. | CLP-similar protein 3 (CLPS3) | CONTAINS InterPro DOMAIN/s: Pre-mRNA cleavage complex II Clp1 | BEST Arabidopsis thaliana protein match is: CLP1-similar protein 5
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0006396 | IEA | InterPro | RNA processing | |
GO:0031124 | IEA | InterPro | mRNA 3'-end processing | |
GO:0009908 | ISO | PLAZA Integrative Orthology | flower development | AT3G04680 |
GO:0010228 | ISO | PLAZA Integrative Orthology | vegetative to reproductive phase transition of meristem | AT3G04680 |
GO:0006397 | ISO | PLAZA Integrative Orthology | mRNA processing | AT3G04680 |
GO:0048827 | ISO | PLAZA Integrative Orthology | phyllome development | AT3G04680 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0051731 | IEA | InterPro | polynucleotide 5'-hydroxyl-kinase activity | |
GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G04680 |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT3G04680 |
GO:0005849 | ISO | PLAZA Integrative Orthology | mRNA cleavage factor complex | AT3G04680 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
InterPro | Description |
---|---|
IPR032319 | Polyribonucleotide 5'-hydroxyl-kinase Clp1, P-loop domain |
IPR045116 | Polyribonucleotide 5-hydroxyl-kinase Clp1/Grc3 |
IPR038238 | Clp1, C-terminal domain superfamily |
IPR032324 | Clp1, N-terminal beta-sandwich domain |
IPR038239 | Clp1, N-terminal beta-sandwich domain superfamily |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
IPR010655 | Pre-mRNA cleavage complex subunit Clp1, C-terminal |
Mapman id | Description |
---|---|
16.3.1.5.1 | RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage Factor II (CF-IIm) complex.component Clp1 |