Gene: Sopen01g004780

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g004780
  • Transcript Identifier Sopen01g004780.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 3686353-3696458 : negative

Gene Family Information

  • ID HOM05D004526
  • #Genes/#Species 159/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g004780.1

Descriptions

  • Description Encodes a nuclear protein that functions in mRNA processing. Mutations in this gene cause embryo lethality and reduced transmission through the female gametophyte. Over-expression of a CLPS3:TAP protein changes the relative levels of two alternatively processed FCA transcripts. It also causes abnormal phyllotaxy and flower development, early flowering under long and short days, and increased levels of CUC1 and WUS expression. | CLP-similar protein 3 (CLPS3) | CONTAINS InterPro DOMAIN/s: Pre-mRNA cleavage complex II Clp1 | BEST Arabidopsis thaliana protein match is: CLP1-similar protein 5
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
InterProRNA processing
GO:0031124
IEA
InterPromRNA 3'-end processing
GO:0009908
ISO
PLAZA Integrative Orthologyflower development AT3G04680
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT3G04680
GO:0006397
ISO
PLAZA Integrative OrthologymRNA processing AT3G04680
GO:0048827
ISO
PLAZA Integrative Orthologyphyllome development AT3G04680

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0051731
IEA
InterPropolynucleotide 5'-hydroxyl-kinase activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G04680

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G04680
GO:0005849
ISO
PLAZA Integrative OrthologymRNA cleavage factor complex AT3G04680

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR032319 Polyribonucleotide 5'-hydroxyl-kinase Clp1, P-loop domain
IPR045116 Polyribonucleotide 5-hydroxyl-kinase Clp1/Grc3
IPR038238 Clp1, C-terminal domain superfamily
IPR032324 Clp1, N-terminal beta-sandwich domain
IPR038239 Clp1, N-terminal beta-sandwich domain superfamily
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR010655 Pre-mRNA cleavage complex subunit Clp1, C-terminal
Mapman id Description
16.3.1.5.1 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage Factor II (CF-IIm) complex.component Clp1