Gene: AT3G04680
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G04680
- Transcript Identifier AT3G04680.1
- Gene Type Coding gene
- Location Chr3 : 1270053-1272415 : negative
Gene Family Information
- ID HOM05D004526
- #Genes/#Species 159/95
- Phylogenetic origin
- ID ORTHO05D005548
- #Genes/#Species 156/94
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT3G04680.1
- symbol CLPS3
- uniprot Q9SR06
Descriptions
- Description CLP-similar protein 3
- Computational description CLP-similar protein 3 (CLPS3); CONTAINS InterPro DOMAIN/s: Pre-mRNA cleavage complex II Clp1 (InterPro:IPR010655); BEST Arabidopsis thaliana protein match is: CLP1-similar protein 5 (TAIR:AT5G39930.1); Has 879 Blast hits to 856 proteins in 281 species: Archae - 107; Bacteria - 16; Metazoa - 235; Fungi - 297; Plants - 73; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006378 | IBA | Gene Ontology | mRNA polyadenylation | 1 |
| GO:0006396 | IEA | GOA Database | RNA processing | |
| GO:0006396 | IBA | Gene Ontology | RNA processing | 1 |
| GO:0006396 | IEA | InterPro | RNA processing | |
| GO:0031124 | IEA | GOA Database | mRNA 3'-end processing | |
| GO:0031124 | IEA | InterPro | mRNA 3'-end processing | |
| GO:0006397 | IEA | GOA Database | mRNA processing | |
| GO:0006397 | IMP | Gene Ontology | mRNA processing | 2 |
| GO:0016310 | IEA | GOA Database | phosphorylation | |
| GO:0006388 | IBA | Gene Ontology | tRNA splicing, via endonucleolytic cleavage and ligation | 1 |
| GO:0048827 | IMP | Gene Ontology | phyllome development | 2 |
| GO:0010228 | IMP | Gene Ontology | vegetative to reproductive phase transition of meristem | 2 |
| GO:0009908 | IMP | Gene Ontology | flower development | 2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0051731 | IEA | GOA Database | polynucleotide 5'-hydroxyl-kinase activity | |
| GO:0051731 | IBA | Gene Ontology | polynucleotide 5'-hydroxyl-kinase activity | 1 |
| GO:0051731 | IEA | InterPro | polynucleotide 5'-hydroxyl-kinase activity | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005515 | IPI | Gene Ontology | protein binding | 3 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005849 | IEA | GOA Database | mRNA cleavage factor complex | |
| GO:0005849 | IPI | Gene Ontology | mRNA cleavage factor complex | 2 |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM, IBA | Gene Ontology | nucleus | 1 2 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR038238 | Clp1, C-terminal domain superfamily |
| IPR010655 | Pre-mRNA cleavage complex subunit Clp1, C-terminal |
| IPR038239 | Clp1, N-terminal beta-sandwich domain superfamily |
| IPR032324 | Clp1, N-terminal beta-sandwich domain |
| IPR045116 | Polyribonucleotide 5-hydroxyl-kinase Clp1/Grc3 |
| IPR032319 | Polyribonucleotide 5'-hydroxyl-kinase Clp1, P-loop domain |
| Mapman id | Description |
|---|---|
| 16.3.1.5.1 | RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage Factor II (CF-IIm) complex.component Clp1 |