Gene: PGR142G4111
General Information
Structural Information
- Species Punica granatum
- Gene Identifier PGR142G4111
- Transcript Identifier PGR142G4111.01
- Gene Type Coding gene
- Location NC_045128.1 : 34340934-34343767 : positive
Gene Family Information
- ID HOM05D004526
- #Genes/#Species 159/95
- Phylogenetic origin
- ID ORTHO05D005548
- #Genes/#Species 156/94
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- pid XP_031383872.1
- name LOC116197772
- name XM_031528012.1
- id gene-LOC116197772
- uniprot A0A218WCF4
Descriptions
- product protein CLP1 homolog
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0031124 | IEA | GOA Database | mRNA 3'-end processing | |
| GO:0031124 | IEA | InterPro | mRNA 3'-end processing | |
| GO:0006396 | IEA | GOA Database | RNA processing | |
| GO:0006396 | IEA | InterPro | RNA processing | |
| GO:0016310 | IEA | GOA Database | phosphorylation | |
| GO:0006397 | IEA | GOA Database | mRNA processing | |
| GO:0009908 | ISO | PLAZA Integrative Orthology | flower development | AT3G04680 |
| GO:0010228 | ISO | PLAZA Integrative Orthology | vegetative to reproductive phase transition of meristem | AT3G04680 |
| GO:0048827 | ISO | PLAZA Integrative Orthology | phyllome development | AT3G04680 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0051731 | IEA | GOA Database | polynucleotide 5'-hydroxyl-kinase activity | |
| GO:0051731 | IEA | InterPro | polynucleotide 5'-hydroxyl-kinase activity | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G04680 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005849 | IEA | GOA Database | mRNA cleavage factor complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR038238 | Clp1, C-terminal domain superfamily |
| IPR038239 | Clp1, N-terminal beta-sandwich domain superfamily |
| IPR032324 | Clp1, N-terminal beta-sandwich domain |
| IPR010655 | Pre-mRNA cleavage complex subunit Clp1, C-terminal |
| IPR032319 | Polyribonucleotide 5'-hydroxyl-kinase Clp1, P-loop domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR045116 | Polyribonucleotide 5-hydroxyl-kinase Clp1/Grc3 |
| Mapman id | Description |
|---|---|
| 16.3.1.5.1 | RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage Factor II (CF-IIm) complex.component Clp1 |